2 genomes BUD4246 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1491 - - - - - - HQ1929A HQ2324A

Pairwise sequence scores
Consensus score	1597	rrnAC1491	HQ1929A	HQ2324A
943	rrnAC1491	1720	630	632
1134	HQ1929A	630	1599	793
1072	HQ2324A	632	793	1601

225 symbols
consensus       -----MELTPDDIQEYDAAAPNHAATETATFGLGCFWGPDARFGALAGVVRTRVGYAGGT
#oth            11111112.1221211.22.12222.1....11......1.1..122..1.........1
rrnAC1491       MTPSAY:P:HPTALAA::E::PPS::A:::::M::::::::::::TP:::::::::::::
HQ1929A         ::::::T:::TL:E:::R::L::DK::::::::::::::E:Q:::::::::::::::::R
HQ2324A         :::::::V:::::::::ES::TS:E::::::A::::::::::::SFD::I::::::::::

consensus       EADPTYHNLGDHTEVVQIEYNPAEISYRALLDRALENHAPRRQPSKRQYQNIILAATDQQ
#oth            22..1.121.1...11.2..1.2221.22..222211.2.22111.1..1212.22122.
rrnAC1491       :P::S:YS:::::::::V::::DTV::E::::VFWA::::FSA:L::::RGVV::HD:::
HQ1929A         KS:::::::::::::F:::::::VL:::E::S:VF:::R:NY:A::T:::::::L::PE:
HQ2324A         T::::::DI:N:::A::L::D:S::T:TT::MI:::S:D:::::::::::H:-:FP:SS:

consensus       RETAKTFLDD-RGFAANSVATRIERLDQ-FYHAEDYHQKYNLRSDPTAADAFDDAGYDDE
#oth            2.121121121211222112.1.121221..2.......12..1212221211.21.111
rrnAC1491       C:A::RTR::LESRTGK::E:A::T::::::L::::::::E:::T:VV::ELE:T-:G:-
HQ1929A         :::LN:::SE::::::DAIG::::::LG:::P:::::::H:::T:::LS:V:::S:::::
HQ2324A         K::V::V::S:N::DI:::::::TSPPSP:::::::::::H:::KRW:IE::::::::E:

consensus       ALRESPAAARLNGFAAGH-----------EIDIDDAAADALRRRL
#oth            1211.12..2..1211..111111111111221222222222122
rrnAC1491       :FVD:TV:::::::V:::GEDDEREALFA:L::SP::LSEV::::
HQ1929A         TV:::::::K:::Y:S:::::::::::::D:PK::HLQT::S:TV
HQ2324A         ::::::T::I::AT::::::::::::::::TH:TEPI::TPNQ--