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2 genomes BUD4248 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC2872

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HQ3381A

Pairwise sequence scores
Consensus score2329 rrnAC2872 HQ3381A
1762rrnAC2872 2093 1351
1918HQ3381A 1351 2333 

311 symbols
consensus       MSTTDIGDDDSDSNANSAGSETTSPVSTRHSDQTSQWYDRNRDELIAGGPLALAIALGVF
#oth            111111111111111.11.11111111111111111111.1.11.1.11.11..11...1
rrnAC2872       -----------M:V::TP:--------------------:L::W:V::S::L::L:::::
HQ3381A         ::::::::::::T:N:::::::::::::::::::::::::::S::::S::T::::I:::V

consensus       PLILLFIESIGPGLGGANYAEALEPLYRQALIYSIGIGVGVTATCITIAYPITYWIAQRC
#oth            ..11..1.....1.111...1111....11.1..1.1..1...1.111...1...111..
rrnAC2872       ::LT::V:::::::::E::::V:S::::G::L::::V::::::V:LVV:::::::::H::
HQ3381A         ::::::::::::S:TI::::T:M::::::T::::L::::V:::::::::::V:::LT:::

consensus       PRRYRLIALLSVTLPLWLNYVVLNYAWVWILARGGLLNRILTGTGIIDSPLDLLYNNISM
#oth            .1....11.1...............1.........11.11.1.1.11111111..111..
rrnAC2872       :D:::::::V:::::::::::::::::::::::::VV::::V:::LL::S::::::::::
HQ3381A         ::::::LG:::::::::::::::::T::::::::::::TV:::V:::ST:TEM::TEV::

consensus       GIGFVYIYLPYVILTLFVSMERLDYRLIEAARDLGASNIRVLLDIVIPRTLPGAAAAALI
#oth            11..........1..11....11..1...1......111..11.1.1.1.11..1.11..
rrnAC2872       ::::::::::::V::MY::::::::Q:::::::::::DV::F::::L::::::::::T::
HQ3381A         FL:::::::::::::::::::QF::::::V::::::T:::::W:V:::Q:YS::L:G:::

consensus       VYARIAGAFATPEILGGPGNVMIARLIVDAFRQYFNYGFAAALSFIFLLIVLAGIGLGAL
#oth            ........1.......1..1....1.1.1..11.11.........1..11.11111..11
rrnAC2872       ::::::::::::::::S:::::::::V:Q:::::T::::::::::V:::L::GTL:::::
HQ3381A         ::::::::Y::::::::::D::::T::::::QT::E::::::::::::T::V:::L::VS

consensus       IPRIRRELRQW
#oth            1.11.1.....
rrnAC2872       S::V:::::::
HQ3381A         ::Q::T:::::