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2 genomes BUD4261 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC2870

 - - - - - -

HQ3382A

Pairwise sequence scores
Consensus score3265 rrnAC2870 HQ3382A
1883rrnAC2870 2350 1365
2747HQ3382A 1365 3255 

440 symbols
consensus       MAAFKATGLMKSFGSTRAVDKIDLTVESGEFFALIGPSGCGKTTTLRLLAGLLAPDAGQV
#oth            111111111111111111111111111111111111111111111111....11..1.1.
rrnAC2870       -----------------------------------------------M:::::T::S:::
HQ3382A         ::::::::::::::::::::::::::::::::::::::::::::::::::::T:::::T:

consensus       HLNDQDITNRPARERATNMVFQDLVLFPHMSVAENVGYALARKGIDNPERQQRVEDALAL
#oth            1.11111.11...1.1.............11.......1...1.111...11..11..1.
rrnAC2870       L::G::V:D:::::::::::::::::::::::::::::G:::S:VTE:::G:::::::::
HQ3382A         ::D:TV:::Q:::T:D:::::::::::::FT::::::::::::::::::::S::TK::E:

consensus       VNLAGFGDRDPADLSGGQRQRVALARALVNDPAILLLDEPLASLDRALREDLQAEFRRIQ
#oth            ...1.......11.....1..........................11...11.1...1..
rrnAC2870       :::::::::::S:::::::::::::::::::::::::::::::::::::::M::::::::
HQ3382A         :::G::::::::S:::::Q::::::::::::::::::::::::::KS:::S::S:::Q::

consensus       RDSDTTFLYVTHNQESAISMADRIAVMRDGAIVNVGPPRRLYTRPATRFVASFLGDATIL
#oth            .1.1........1.1..1..1..1......1..1..1..1...1.1.....1......1.
rrnAC2870       ::::::::::::D::::M::S::V::::::R::::::::Q:::D:Q::::::::::::L:
HQ3382A         :E:E::::::::::T::::::::::::::::::D::S::::::::::::::T::::::::

consensus       RGDVIRRDGADSTVTVDTGAGMIRAAANAANPAVGDTVTIALRPDAFTIADEDINGTVID
#oth            1.1..11111111.1.1.11.111111111111..1...1.1..1.1.1111111...11
rrnAC2870       D::::::E:P:--:V:Q::::PL::D:D::SY:::::::V:V::E:V:LGGG:LT:::T:
HQ3382A         ::T::QC:M:E:::::::PI:::TP:M:TI::D::E::::::::::::::::G::::::T

consensus       SAYKGFYEEATVDLADGAELTIRRDAHIEPHDTQTNTIDSIKSNAQIPKPPSEIKATVRN
#oth            1...........111111.111.1111111111111111111111111111111111111
rrnAC2870       V::::::::::::-CS::::VV::E---------------------------------::
HQ3382A         ::::::::::::E:::SI:V:::T::::::::::::::::::::::::::::::::::TS

consensus       SAARDTAAEADAGTDEETPLNLNAGLRVGDSVELQIDRAVLVRDNRRNRESTDGDGDNGV
#oth            1.111..11111...111111111111..11.1.11111...111111111111111111
rrnAC2870       T::P::::S::G:::--------LPF:::ET:::GVS:::::::E::-------------
HQ3382A         ::S:T::G:PS:::::::::::::::Q:::::T::::GG:::VE:NY:::::::::::::

consensus       LDRNKNTNPIAGDQEPDLNS
#oth            11111111111111111111
rrnAC2870       --------------------
HQ3382A         ::::::::::::::::::::