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2 genomes BUD4264 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC1071

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HQ1430A

Pairwise sequence scores
Consensus score1018 rrnAC1071 HQ1430A
689rrnAC1071 950 384
713HQ1430A 384 1007 

139 symbols
consensus       MSEARVADCMTEPMLTLEAEELALDAAAAMRDASIKSVVIVDDACQPAGILTSTDALRMI
#oth            .1111.1.1..1.1..11.1111111.1..1111.....1.111...1..1....11111
rrnAC1071       ::G:T::::::::V::VT:G:P:::V::::D:Q:::::::::E::::E:::::::YV::T
HQ1430A         :T:L::K:V::T::::::::T:VSE::D:::K:T:::::V:S:G::::::F::::::SV:

consensus       ADGVDPDEATVGEHMTTDIETTSPDTALAAAAEQMHDNNISHLPVADADNRGTGILSATD
#oth            ....111.1..1.1...111.1..11..1.1.11.11111..1..1.111111...11..
rrnAC1071       ::::::T::::::::::::V::::E:::S:V:ST:W::::::V::V:DE::V::::::::
HQ1430A         ::::PT::T::K:Y:::GV::V:::V::::::::::EGGY:::::::::GD:V:::TK::

consensus       IAEYIADDVIDDAISTVNE
#oth            111111.111111111111
rrnAC1071       LTV:L:::-----------
HQ1430A         :::V:S:P:::::::::::