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2 genomes BUD4274 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC1783

 - - - - - -

HQ2552A

Pairwise sequence scores
Consensus score2908 rrnAC1783 HQ2552A
1508rrnAC1783 2080 680
2080HQ2552A 680 2723 

376 symbols
consensus       MPINERLRDHGIDRCERAGLDTARHDDAAGPPAIAHTANDDAAALSDASSNHDERPVIDA
#oth            1111111111.111.1...1111111.111.111.1.11.1111.1.11111.1...111
rrnAC1783       :::YPSV::::VSL:::::Y:V:V:::SG::S:L:-:P::::VG:V::T---:P:::---
HQ2552A         --M::::LTV:::::H::::V:S:SS:::K::V:::::G:ET:::::E::::::::::::

consensus       RASEPLTEETLLSSGWSIAIETIANVDPDGLIPRFWNAQRENRACLFVTPSQQAMGTTLT
#oth            1.1..1.111111111111111111.1.11111.11.11111.11...1.111.11111.
rrnAC1783       -:V:::::---------------:::G::::::::V::V::G:D::::V::TE:::::::
HQ2552A         :::::P:P:::::::::::::::SE:::TVVLS:V::N:SH:::T:::::T:::-----:

consensus       AKIANILGAPPCLAADGNDGRQFYNGPDRIPLADGGYAAARAPAPDLQWRESRTAQGQPG
#oth            111111.11.11111111......1....1..11.1..11111.11.1.1.1.111.111
rrnAC1783       QMV:TV::E::::::::P:::::::::::V::S::T::C:::::S::::::V:VD::---
HQ2552A         :::T:::T::VGVVDST:::::::P::::::::E:::::VPTS::-:S:N:::::S::::

consensus       LVATISDDAPAITSEEDGRKTTEQDDVEIDQRKTAESGSTDEKTSRKPTTEQEDKENITT
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC1783       ------------------------------------------------------------
HQ2552A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       DVNPSMEPSRSNDTTPDMNSSVNIGINRPRLELRAGDEVLARLNNVDALADAGREAFQHA
#oth            111111111111111111111111111..1...11.1..111.11..1..111.11.11.
rrnAC1783       ---------------------------::::::GV:T::V:V:EH::S::::::H:::::
HQ2552A         :::::::::::::::::::::::::::::W::::::::::V:::::::::CPP::R:PY:

consensus       YRRADNGQIRVLAFAGRPIERFGGITAMRRNGFQPVPAPLVPEHLFNEDADHGRWAVCQP
#oth            .1.1.11.11.1111.111..11.1.1..11.11...1......1.11111111.11111
rrnAC1783       ::::::::FE:T:-G:DV::::P:P:::::G:YP:::M::::::::P:::::S:::::::
HQ2552A         :H:D:DK:::::D:::::V::Y::::D::H::::::::::::::M::KSIT-:W:G----

consensus       DGGTDVLTADQLSAWG
#oth            11111....1111111
rrnAC1783       ::::::::::G:::::
HQ2552A         -----::::Q:-----