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2 genomes BUD4275 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC1041

 - - - - - -

HQ2685A

Pairwise sequence scores
Consensus score2631 rrnAC1041 HQ2685A
2040rrnAC1041 2608 949
1540HQ2685A 949 2138 

330 symbols
consensus       MTKLQRYIPDIWRSNQLMASRYQYTNDGIFDGIVNKYFDTVSPSGFDLMAEDWDNCFLLD
#oth            111111111111111111111111111111111111111111111111.1.1...11...
rrnAC1041       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::Y:::
HQ2685A         ------------------------------------------------:D:E:::L::::

consensus       ACRYDLFADLNPLQGRLERRQSQASSSPGFIEAHFHAGRFHDTVYVTANPMHAFDEWCTI
#oth            1....1.1111111.1.11.1.1...11..1111.1.1111.........1.11111111
rrnAC1041       :::::M::::H:FE:::K::L:::::T:::L::::S:::YY:::::::::::SV:::::V
HQ2685A         G::::::EQT:T:::T::S:::P::::S:::KNS:::KT:::::::::::-:::Q----:

consensus       ELDTVFHATINLLDDEWNEDIGTVPPQDMAAALRAARDTYPNKRILAHFIQPHHPFIGEQ
#oth            .11.1..11..1111..1..11..1.11.11.111.11...1...11..1...1..1.11
rrnAC1041       :::::::SV::VWET::D::::::::E::V::VK:::K::::::::::::::::::L:PT
HQ2685A         :PE:-:::::::::::::::LL::T::T::D:::E:H::::E:::FG::M:::Y::::::

consensus       GRQIDDGGMARRDKAGNADERANANDEQKIWARLQFRQNDLSEQAVWEAYRENLELLLDH
#oth            .111111.111.1.11111111111.111..11.11111111111.........1.1111
rrnAC1041       ::EMV:S::QG:E::KG::VSTS:::::::::::--::G:V:::R:::::::::K::FP:
HQ2685A         :Q:::Q::V:::::Q::VV::::IG:---::VK:::QL:S:TPE::::::::::::V::I

consensus       IRDLAAELDGQTVLTSDHGNLVADWIGPIPCREFGHPGNLRVDELIRVPWLDMDGDERIP
#oth            111.11111.1..1........1..11.1.1.11...11.1.11.11...1111111.11
rrnAC1041       L:E:LDTV::K::V:::::::::::LW:F:V::Y::::E:::P:::E::::VF:T:::::
HQ2685A         :P::::::S:::::::::::::G:::::::::G::::P::Y::T:T::::F::G:TS:T-

consensus       IQSDRPLEHESERNKTAIRDRLSDLGYAQD
#oth            .1..1.111111111.11.1..1....111
rrnAC1041       ::::::::SGV::GS:E::::::::::HS-
HQ2685A         :T::P:VV:::LE::::-:K::V:::::::