2 genomes BUD4276 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1869 - - - - - - HQ1786A

Pairwise sequence scores
Consensus score	4849	rrnAC1869	HQ1786A
4156	rrnAC1869	4777	3470
4163	HQ1786A	3470	4733

652 symbols
consensus       MPDQNTDNGGFEDIRQNVDGHPMTNLLGYARPYWLRLLLGILAAICTRGARLVPPIIIAA
#oth            .1.111.1...111.11......11.11..1......11.1...11..1........1.1
rrnAC1869       :::---:Q::::GV:E:::::::V::VS::T::::::FV:::::F:::F::::::::V::
HQ1786A         :T:::::::::S::::H:::::::S:::::::::::::::V::::G:::::::::::::T

consensus       AIDRVVLNSDDPGLLSDAGLLPAGQITGEAARIAFLQRLVVIAAIAYLIRSAARFASRYL
#oth            1......1.11....1.1..111.1...1.....1.11......1......11..1....
rrnAC1869       :::::::::GE::::T::::::P:::::::::::::::::::::::::::::::::::::
HQ1786A         T::::::G:::::::::L::FT::E:::T:::::V:EQ::::::L::::::IT::G::::

consensus       LQSSAQKIQRDLRNDTYDHLQHLSLDFFANHQTGGMLSILNSDINRLEQFLNTEFRQLIR
#oth            ..............1.........11...1......1...........1........1..
rrnAC1869       ::::::::::::::E::::::::::S::::::::::M:::::::::::S::::::::M::
HQ1786A         ::::::::::::::::::::::::M::::S::::::::::::::::::::::::::::::

consensus       VVATVGGIAVILWTYAPKLALIALAPVPIIGIASAGFLQWIEPRYRSIRQTVSRLNTRLE
#oth            .....1....1.11.1.1..........1..1..11..1......1...1..........
rrnAC1869       ::::::::::::Y::S:::::::::::::::V::GF::T:::::::::::::::::::::
HQ1786A         :::::S::::V::Y:::T::::::::::L::::::::::::::::K:::E::::::::::

consensus       NNLGGAAVIKAFNRYAFERDRVADQSREYHDEQVAALRIRRAFFAGLRLLTGIVFVLILL
#oth            ...1.11.1.1.1..1...1..11..11....1........................1.1
rrnAC1869       :::S::P:::::D::D:::K::T:::Q:::::K::::::::::::::::::::::::::Y
HQ1786A         :::::V::V:V::::::::::::E:::S:::::::::::::::::::::::::::::V::

consensus       IAGRDIITAPQGEQAVISAGAFAAFFLYIRRLYSPMRRIGRSANKYQLAKSSAERVFGLL
#oth            11.111..1111.1.11.1...1.....1.........1.1...................
rrnAC1869       V::M:F::N::::T:-L:::::T:::::::::::::::V:K:::::::::::::::::::
HQ1786A         :G::S::::STS::::::T:::::::::L:::::::::::::::::::::::::::::::

consensus       GQEPEVTDPANPYEPDNIDGQVEFDNVHFGYGDREPVLRDISIDVPDGATVGLAGATGAG
#oth            ..1.1..1.11111..1...1.1.11.1.1.1.111.11.1.1...1.1...........
rrnAC1869       :::::::::EDT::::S:::L::::D:T:::::EP::V::V:L:::::::::::::::::
HQ1786A         ::T:T::E::::VI::::::::T:E::::S:T:::S::T:::::::P:T:::::::::::

consensus       KSTLLKLVPRLHDVDSGAIRIDGRDIREYDLQALRDEIAIVEQNPYLFSGTVAENIAYGD
#oth            ....1...1.1......11.1..1.1...1..1..1...1...1................
rrnAC1869       ::::::::::F:::::::V:V::V:V:::G::S::S:::::::Q::::::::::::::::
HQ1786A         ::::V:::S::::::::T:::::::::::::::::::::V::::::::::::::::::::

consensus       RDVLDAERSDDEARGSSWESARDAVRDAAEAAAADEFIEALPDGYDTQIGERGIKLSGGQ
#oth            11..11.1111111...1111..1.11..1..1.1..111..1.................
rrnAC1869       :E:::::Q:::::::::::T:::R::::::::Q:H::::D::::::::::::::::::::
HQ1786A         S:::ES::-----Q:::--:H::::VE::K:::::::VS:::S:::::::::::::::::

consensus       RQRVAIARALLNDPEIIIFDEATSDVDTETEDRIQQSIDRLIADRTAFVIAHRLSTIRDA
#oth            ..............1..1.............11.11..11.1...............1..
rrnAC1869       :::::::::::::::::::::::::::::::::::E::EQ:V:::::::::::::::Q::
HQ1786A         ::::::::::::::S::V:::::::::::::EQ:K:::::::::::::::::::::::::

consensus       DRIIVLDDGEIIERGSHEDLIAADGAYAALWDAQVEANTADDRSRPVTSADD
#oth            ..11.1...1.1.1.1.11.1111.1..1..1..11111....111111111
rrnAC1869       :::V:M:::K:V:::::T::L::::D::D::H::-----::::T---V::::
HQ1786A         ::V::::::::::S:T::T::EEF::::::::::::::::::::::::TESE