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2 genomes BUD4278 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC2505

 - - - - - -

HQ2390A

Pairwise sequence scores
Consensus score3571 rrnAC2505 HQ2390A
2951rrnAC2505 3547 2232
2852HQ2390A 2232 3608 

497 symbols
consensus       MVEQRDGDEINLLDSSIRTTGGALFSTTLFALSGIVYAAVTSPAAAGTYFFIAIGIALVL
#oth            ..11...1..1.........1...1...111.......1..1.111.......1111...
rrnAC2505       ::::::::::D:::::::::S:::V:::::V:::::::F::::::T:::::::LSVS:::
HQ2390A         ::SH:::S::::::::::::::::::::VY:::::::::::T:SV:::::::::::::::

consensus       RPIRGISQALQKIGSERGELVGPYLGLAALFALGYLLIILGGFIIAALARVIIRNTAFAP
#oth            ...1....1.1.1...1..1.11.1..111.11...1.111.11111.11.1111.111.
rrnAC2505       ::::::::::K:V:::::::::::::::::::::::::V--:V:V::::G::V:::VVS:
HQ2390A         :::K::::T:::::::Q::S:SS:F::TIV:TV:::T::::::M:PP:R::L:ES:::::

consensus       GLLAPIGLLAISTALLMITQSLVAAIGYPSAETWITATQGAIQLIILLALAGILATAADL
#oth            1.11.11.1.1.1..1..11...1......11..1.1.1111......1111111.11..
rrnAC2505       ::::::::F:V:V::S::VS:::G::::::V:::L:S::S:::::::::::PT::::V::
HQ2390A         S:VI:VI::::::::::::::::::::::::G::::::K:TL::::::LFD::FT:P:::

consensus       IIVVAGTRLAVLGIVAIAIRTAPTLPDRRALARAWDFARWSIPDQILDRLSYNMPVYVLG
#oth            11..1.1.11.1.1.11.1111..1.111111...1..1......11..1..........
rrnAC2505       LL::::V::::::P::V:LGVV::::::H:VE::::::K:::::::F:::::::::::::
HQ2390A         ::::V:::MF:T:::I::::::::V:TH:E:::::G:::::::::V:::F::::::::::

consensus       VVATPAAVGIYEAADRFADFGATISWRLASPLLTKVSGDASAGDSALAYLDGAVTGGTGV
#oth            ............1.............1.1..........1.1.1111.............
rrnAC2505       ::::::::::::::::::::::::::H:S::::::::::S:V::TH::::::::::::::
HQ2390A         ::::::::::::T::::::::::::::::::::::::::::::E::F:::::::::::::

consensus       TFLVLGYLLAAHDMIAAIAFAGSATGSFSATALIVGGINILRGFWTLSSHAIEGLGKPSV
#oth            ..1.1.....1..11.1...1.11111..1.1.1...1..1......1...1..1.1...
rrnAC2505       ::V:F::::::::VV:R::::::E:-V::::V:L:::V:::::::::T::::::V:::::
HQ2390A         ::::::::::G:::::::::G:T:V::::T::::::::::F::::::::::M::::Y:::

consensus       SFRTKAYGLIFSVPIPAIFGAQMGAVAGAAGYAIMNLVIFAYVIYYARPVLGRIPIDAKL
#oth            .....1...1....11.1...11......1...1......1..1..1.1.1.11.11111
rrnAC2505       :::::L:::V::::V::::::EF::::::::::V::::::G::L::S:S:F:::::EP:V
HQ2390A         :::::::::::::::T:F:::::::::::I::::::::::::::::::::::GV:L::S:

consensus       AAALTVGLGISFLLTTAAIAGLSRAGLSPIVTASIAAVTCLIGFGGFLMAVSIGARRAAQ
#oth            .11....111.111..11111...1.11.1.1.11....1111.1...11..111.1111
rrnAC2505       :T:::::::V::V:::G:V::::::::::::V::V::::::V::::::V:::TS::LV:V
HQ2390A         ::K::::TI::T:V:::T:EL:::L:ST:S:::V:::::TT:I:T::::T::::T:::V:

consensus       RAADIWRGRARSLAGGQ
#oth            ..1111111...11111
rrnAC2505       :::TL::S:::::F:--
HQ2390A         ::Y::YI:D:::F:S::