2 genomes BUD4279 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0271 - - - - - - HQ2208A

Pairwise sequence scores
Consensus score	2987	rrnB0271	HQ2208A
2443	rrnB0271	2924	1862
2406	HQ2208A	1862	3005

420 symbols
consensus       MYGMVTPMTDIIDELLLRLLIAFGIAALIGLEREQAESGGMFAGSRTFPLFALAGALIQA
#oth            111111111111111.1...111.11.........1....1............1..111.
rrnB0271        -------:VE:::S::::::V::::G::::::::::::::::::::::::::::::TV::
HQ2208A         :::::::V::PLT:V:F::::GV:L::::::::::S::::T::::::::::::Y::::S:

consensus       FFPAILPLAVLAIAILLTVAYAGKVLTEQDIGLTTLMAALLTTILGALAMHSERGAIIAI
#oth            ...111111.1.1111.........11.1......11.....11...1111..1.111..
rrnB0271        ::::LF:VT:::::::::::::::::::G::::::VT:::::VL:::::VS::::TVF::
HQ2208A         :::R::S:::S:LVVP:::::::::WY::::::::::::::::::::MT::::T::::::

consensus       ILGGLVTILLSAKDPIHRFANQIDERERRASAKFILVVLVVLPALPDRELDSLYGLNPRF
#oth            .1..1..1...1.11..1.111.1.1..1..1......1....1....1..1........
rrnB0271        :::::::::::::PT::::VDK:::::::::L::::::V::::I:::::::V::::::::
HQ2208A         :V::T::V:::V:::::E:::::E:T::L:::::::::::::::::::P:::::::::::

consensus       IWLMVGFVTGLGFGAYILARALGAERGIALTGIIGGFVSSTATTVSMAERISENEDLYRI
#oth            ..1..1.....1.1..1.111111111..1..11............1..111.111..11
rrnB0271        ::V::::::::S:V::::S::V::K::::::::F::::::::::::V::::::TP:::::
HQ2208A         :::::V::::::::::V::QF:KP:QS::V::V::::::::::::::::KTV:::T::HV

consensus       CAFAVVTASIVMFPRALIEVAVVNRALLPQVAIPLGVMSGVGICAAGILYWQSTSDEAIE
#oth            11.1..1..........1......11...1..1.....11..111..11..11.11111.
rrnB0271        GS:S::V::::::::::L::::::::::::::V:::::T:::V:I:::V:::::TES:V:
HQ2208A         ::::::::::::::::::::::::PT:::S:::::::::V:::V:::V:::LT::::T::

consensus       SGDLKNPFRLRPALLFGAVFAIVLLVSQHANELLGDSGIYAMAFLSGLADVDAITITLSA
#oth            111.1.....1...1..1...1.....11.1111.1..1.11..1........1.1...1
rrnB0271        T-::T:::::::::F:::::::::::::S::TWF::::::VT:::::::::::::L::::
HQ2208A         ::E:::::::Q::::::V:::V:::::E::H::::T::V:::::F::::::::M:::::R

consensus       LAADGEISARVATTGIVIAAIANTLTKAALAWLLGTQRLGRRVSIALGAVAAAGIALLIL
#oth            .1.1.1..11........1......1..1.......11...1.111..1.111.111111
rrnB0271        :E::::::::::::::::G:::::::::G:::::::VE:::::TV::::::::::VVVV:
HQ2208A         :::E:T::TQ:::::::::::::::V:::::::::::::::L:::V::V:IVS:L::::V