2 genomes BUD4282 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1075 - - - - - - HQ1083A

Pairwise sequence scores
Consensus score	2962	rrnAC1075	HQ1083A
1750	rrnAC1075	2765	563
1775	HQ1083A	563	2970

411 symbols
consensus       MILSGAIMIIGLTLGALAAQLKDLRLGGVIVLPILAIYTLRDFFSLPILIIGTAAAWICL
#oth            11111111.1..1..11.1..111..1..1.1.11.1...11111111111111..111.
rrnAC1075       :::::::V:T::V::VT:T::W::::S::::V:LF:L:::Y:VS:::V:VVSV:::YW::
HQ1083A         -------:::::::::::::::SY:::::M:::::::::::E::TPV:F::::V::::S:

consensus       TVLQERTLNYGRRLLLSAILFGAIAPCIAGAVLAQVFGNQLSFEEAEAIGSILPGIAAFN
#oth            1.11.1..1.....111.111.111111111..111.1111.11111..1..1..11.1.
rrnAC1075       ::VS::::L::::::YT::::::VI::::V::::S-::YYT:SI:VY::::::::V::Y:
HQ1083A         W::::Y::::::::F:::VST:V::TILT:F::S:::P::::::T::::T::F:::T:::

consensus       LHRLEFERRRADLLAIGAAYIALIALGSALLLELFLALLGQDAPLLFLQASDIAAFRNLA
#oth            .1.111111111.111.11.11.111.11.111111111111111.1111..11111111
rrnAC1075       ::::::::LVD::V:T:::::G:LI:::::VS:TT:::::T::T:::SP:::V:Q:::V:
HQ1083A         :M:VSPGN:::E::I::CG:L::::V:-V:::W::PTFVT:TP:F:T::I:::T:WIE:R

consensus       PAGGNHGRMHGGAIGLIILFIGILISEGFRQRWNHRLYGIIAIPLLALFTVAKPSVFILY
#oth            11.111111111111.11.1111111111111111..1..111.1.1..1.111..111.
rrnAC1075       V::::F:M:::P:V::SV::L:L:V:LFVETV::V:::::::L::::::V:::::::L::
HQ1083A         :Q:SP:S:VIP:W:V::::P:S:F:Y::::::YD:::V::VI::T:G::::QSS::V:F:

consensus       AAGALAIYAIIQFIQRRTLFYGRVLLSMAILLGAITALILGVFAEQLTAIPGNSLLFTAI
#oth            1111111.11.11.111..1.....1111111111111111.1111.111..11.1..11
rrnAC1075       ::FL::T:::::::H::::V:::::V:::----:V::VL:S:P::M:::L:::Y:::::L
HQ1083A         TL::TI::YF:TY::YM:::::::::TVS::::T:YS::F:::FS::VL:::V::F::G:

consensus       IGGIGAYNLNRLSRKERRAHIRIDAAIFAISFTLLFFAIDAPPPGLLHDNLGFIALVGIM
#oth            11......11.1.11111111.11.11.11111..111111.11111111111111.111
rrnAC1075       ::::::::VH:::VT:L:QST:LS:::::V-:V::VS:LT::::--VPGGM:W::::TVV
HQ1083A         FV:::::::::V:::T:L:::::::GL:V::Y:::::L::I:VT:::::::V:YIF::::

consensus       ALALAGIEAARLEQQIPDATAFASESAFARSSVDGIRRLDKRLRADRRDDK
#oth            1111111111....1111111111111111111111111111111111111
rrnAC1075       ::VPG:LT:::::::---------------------::::::W:PV:::SV
HQ1083A         IV:::V::MY::::S:::::::::::::::::::::GSYESS:T::NQE::