2 genomes BUD4294 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3055 - - - - - - HQ2289A

Pairwise sequence scores
Consensus score	3315	rrnAC3055	HQ2289A
2995	rrnAC3055	3304	1263
1583	HQ2289A	1263	1871

443 symbols
consensus       MTADTNGASTGSRQSDWGASRRSMLQAIGAIAGIGLFSGTGQAQTGAGLSGTGAVYVVTT
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC3055       :::::::::::::::::::::::V:SS:::V:::::::::::::::::::::::::::::
HQ2289A         -----------------------:M::VSK:I----------------------------

consensus       GAGQSNGNGNGKEYLVLDGSGSVAFSTGGTADEAFQYAFDNVPDSGGAVIASADTFRFGE
#oth            1111111111111..111111111111111111111111111111111111111111111
rrnAC3055       :::::::::::T::::::::::::::::::::::::::::::::::::::::::::::::
HQ2289A         -----------:K::---------------------------------------------

consensus       PAQLGDNTTLTGQQGTRFVASQTGTGKDPAPSESQSNPLPAGHDLVRVRGDNVAVTDIEL
#oth            .11111111111111111111111111111111111111111111111111111111111
rrnAC3055       ::TM::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ2289A         :G::T-------------------------------------------------------

consensus       DANGTQLNNQAIQADQCDGVYIARNHTVNGLQMALSFTRCENVLIEGNEVLNPNWYGITS
#oth            1111111111111111111111111111111.1...1..111.1111...1........1
rrnAC3055       ::::::::::::::::::::::::::::::F:::::::::TG:TV:H:::V:::::::::
HQ2289A         ------------------------------::F:::V::S:::::I:::::::::::::T

consensus       RAAPPGSDRDLRQSSDVTIARNRVSGMKFNNIAPYNVANFAVIENITFDGGHSLIACSPA
#oth            .1..1...1........1..1...1.1..........1..1.11.111............
rrnAC3055       ::::T::::::::::::V::G:::V:V::::::::::::::::G:V:V::::::::::::
HQ2289A         :G::::::I::::::::::::::::::::::::::::S::L:S:::V:::::::::::::

consensus       QRGAIVGNVCRDLDEFAPDPGGEAGIEIEYKETHLRDEMAGTKRARSSDITISGNQVDSC
#oth            .1.1......11.11.....................1111..11...1...11.......
rrnAC3055       :::T::::::Q::T::::::::::::::::::::::::V:::PK::::::::::::::::
HQ2289A         :Q:::::::::G::T:::::::::::::::::::::EV:K:::::::Y:::VT:::::::

consensus       PVGILARTVPADADNQDAREADRCYSFTITGNAISNASAAGIRIRSGAAGVVATNTVRNA
#oth            .............1111..111.1......1.11.1.11....1...11.........1.
rrnAC3055       :::::::::::::::T:::S:E:P::::::::TV:::::::::L:::N::::::::::::
HQ2289A         :::::::::::::ES:Q:::T:::::::::S::::D:TD:::::::::D:::::::::G:

consensus       DTAIDIAEEFTAAIQQNLNATRE
#oth            1..1..1....11.1.1..1..1
rrnAC3055       G::V::D:::::D:E:G::V::-
HQ2289A         :::::::::::T:::::::::::