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2 genomes BUD4300 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC2391

 - - - - - -

HQ4003A

Pairwise sequence scores
Consensus score2067 rrnAC2391 HQ4003A
1179rrnAC2391 1788 365
1253HQ4003A 365 1983 

262 symbols
consensus       MWIEYIPCAHTEMQCIRQENLLQACNNSLFADEAGALERTDINGEDRAFADCDEGEALYQ
#oth            1111111111111111111111111111111.11111..111111111.111.1.11.11
rrnAC2391       --------------M::::SM--TMD::::::F::S:::VK::::E:S:::::-:VI:--
HQ4003A         :::::::::::::::MKSL:::::::TYMYG::IP:P::::VSVG:Y::VMY::::::::

consensus       YERPKDSDDPEFILLQSFDQNRLPPLNFEQARLSREGNGPTEAISLRTLIDQFAARCCSG
#oth            11..1.111..111111111.1111111111..11111.1.1111111111111111111
rrnAC2391       --::::::E:::FW:SVT:::::--------:::YP:P::::T::::::::L:M::::TV
HQ4003A         ::::V:WQ:::W::K:::EH:EV::::::::::Y::H::S:L:V-----VT:Y:TDIS::

consensus       GVVDSRGQIRSDDRNPADRQSRNGRYEIRISGPCNPELGAYGRDDDNMVLRAATNHLIRQ
#oth            .11.11111111111.1111.1.11.111.1.1111.111.1111111.11111.11.11
rrnAC2391       ::::TN::::TP:::::T:S:H:H::::::T::L:T::-V:::::QSS:::D:::Y:::E
HQ4003A         :--:::SSSD::EDG:S:G:::::-:WTE:::T:I::T:::HQQK::::--:VV::F:E:

consensus       HNLIRAIEPLPWTPTWARNNASINDTAEHPDGREQMRQAEELDGGDYLDTAMNKKDKHRR
#oth            .1.111111..11.111.1111..11111...1.1.111...11.1..1.11111..11.
rrnAC2391       :D::::VS::::V:--G::K:V::::PTY:::N:::::F::::::Y::::HYKMS::K::
HQ4003A         :::LDH::-::Y::::::T:C:::EV::::::::-:NG::::VS::::F:::::::::D:

consensus       IRNLANAVRSDLEMSLAGDWQE
#oth            111111111111.1111.1.11
rrnAC2391       L:QMCD::S:E::V:F::::--
HQ4003A         :K::::--:T:V::T:R:K:::