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2 genomes BUD4404 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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NP3034A

HQ2916A

Pairwise sequence scores
Consensus score1286 NP3034A HQ2916A
738NP3034A 833 633
1181HQ2916A 633 1286 

165 symbols
consensus       MRETIENRGINGCRATLVFDTGGPVGSDHVMIVKPTDTESEWLINRWFYFNEQVEAYMWN
#oth            111111111111111111111111111111111111111111111111111111111...
NP3034A         ---------------------------------------------------------:::
HQ2916A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       FAEKICTDAEYRQRSLEETADWKRVANLYEPLARRLYQELSRSERSEFPIMNDRSRADSE
#oth            1...1...11...1.11..11....................1...........1..1...
NP3034A         V:::V:::E::::::V:::::::::::::::::::::::::::::::::::::N::::::
HQ2916A         :::::::::K:::Q::G::EE::::::::::::::::::::Y::::::::::::::D:::

consensus       KLESLCEELFEEIKAIVRQGADQHPEAIYDQKRAELQQWLGNESE
#oth            1.1..1......1.....1.1.1...1..11.1.......111.1
NP3034A         T:::::::::::T:::::H:K:::::T::EE:::::::::::K:T
HQ2916A         ::K::S::::::::::::::::H:::::::::K:::::::TD:::