2 genomes BUD4407 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - - - - - - - NP3564A HQ1852A

Pairwise sequence scores
Consensus score	4131	NP3564A	HQ1852A
3169	NP3564A	4007	1776
2738	HQ1852A	1776	3969

534 symbols
consensus       MGSAGSGSAPMMRLPDADAAPATILSIPGAVIRRFDPRDVVADAIAAIGPDIIIAADPNA
#oth            111111111.111..11.1111.1.11..1.1111111...1..11.11..1.11.1.11
NP3564A         :::::::T::::P::P::GT:::::::::::VE:YTV::::::::D:::::L:V::P::Q
HQ1852A         ---MTVS:I:ST::::S:::SG:L:TV::S:::E:::V:::S::V::VK:::::P:::D:

consensus       AYVAGPALTGLADVPIYDPGRGMLPQRYETANAGIAIVASPSIDELPDDPGDIQRDGIGS
#oth            11.11.11..11...111.1.11.111111111111..11..111..11.1111111111
NP3564A         ::::::SV:::::::VV::T:--:TS::FVPD:::::::T::PE:::PT:::::::::::
HQ1852A         GV:I-:::::SI:::::Q::::::::TV::::GSVT::V:::::S:::::MSLIE-----

consensus       DSGSGAEHGCLLTNQLALTIDPHARQTRLDGIDAYIDALDDAWITDHSLEAEAGADISHL
#oth            1111111.1111.11.1.1....1.1.1...111.1111111.111111111..1111..
NP3564A         ::::::::V::::::::::::::R:M:::::::::L:::P:G:--------H:::PVT::
HQ1852A         -----TS::YVV:DT:S:Y::::::::Q:::LEE::TTV:S:::::::::::::V:::::

consensus       STRLRAEYNRDTHERDGHAIPVAGAGPPAARLGAAIDDSERPLIELSLFANGAVDANTHD
#oth            ..1..11.1.111111.1111.1.1.111111.111.1.11.1111.111....111.11
NP3564A         ::G:::::-:T::::G:S:Y::Y::::::STV::G::E::::F:::::Y:::::::T:::
HQ1852A         :::::SS::::VTVP:::Q:S:::I:TSR::::V:V:::TQ::TVT:V:P::::TT::IS

consensus       PDRFGIRGIDDIGRKRANHLREAGFDSRSAIADAGPHALAALRGIGERTARQIHASARAI
#oth            .11..1..1111111..11..11..11.1.1.1.1..1.111111.11..111....1.1
NP3564A         :SN:::::L::::::::GL:::H:::::T:::::::::::D:::V::::::TV::::T::
HQ1852A         :::::L:::TGVSET::::::T:::ET:::V:T:S::E:T:VPS::TN::Q::::::::V

consensus       AAEEIVPRDDGSLPRGDPVFIDIETDGLAADTAWLIGVLDGGAEDGRYLAFRQRDHNAPA
#oth            11111.1111.1..1.....1.......111.1........1111.1..1...1.1...1
NP3564A         T:G:V::::G:V::::::::V:::::::NG::V:::::::::S::::::P::::::::::
HQ1852A         :D:I::STG:::::T:::::::::::::::S::::::::::S:SS:N::::::P:L:::S

consensus       AHIEAFISWLAGPARRRPVVAWNGRRFDFDIIARQLQQHAPEWLDDWQRRYQFDPLYWAR
#oth            1.1.1.11..1.1.11........11...11.11..11.1.111.1.11..1.....111
NP3564A         E:::S:::::::::QG:::::::::::::P::::::E::::::T:E:::::::::::Y:S
HQ1852A         ::L:::MT::T:S:::::::::::YG::::V:HD:::T:C:SY::::EN::T::::::G:

consensus       SQNNAALPARSNRLEHVATALGWEPTTQGINGAAVAAAYNAWRRRANSADNPQTVSQPDW
#oth            111..11.1.1.1..1...........1..1.11..11.11..111111.111111..1.
NP3564A         :K:::::::::::::P:::::::::::T::D:::::::::::::T:D:Q:G----Y::::
HQ1852A         T:G::EF:G:T:K:::::::::::::::::::RR::EL:VD::E:M:T::::::::::P:

consensus       NRLEAYCEDDVRALARIYEALQDAHQTQSRNAPDKGGEDPQSRTSQGSLSDFGL
#oth            1..............11....1..1111111..1111111111.1.......11
NP3564A         E::::::::::::::TV:::::::----::Y:::T:::P:::::T:::::::S-
HQ1852A         :::::::::::::::::::::T::::::TK:::L:SKS:SSTS:::::::::::