1 genomes BUD4466 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - pNG1020 rrnB0046 rrnB0179 - - - - - - -

Pairwise sequence scores
Consensus score	2640	rrnB0179	pNG1020	rrnB0046
1048	rrnB0179	1504	1038	1026
2601	pNG1020	1038	2639	2520
2559	rrnB0046	1026	2520	2633

355 symbols
consensus       MDRLPPAYDATPGDDALEAAIEERLVDIDSGRYRTNVASVLRKFAAWARDQHGISSPEDI
#oth            111111111111122111211121111111111111111111111212111111111111
rrnB0179        ------------------------------------------------------------
pNG1020         ::::::::::::::G::::::::::::::::::::::::::::::T::::::::::::::
rrnB0046        :::::::::::::G::::T:::K::::::::::::::::::::::::S::::::::::::

consensus       DDDLCRQYARDLARADDRDDISPETARRYFAYVRSFLTWAVYEGLIPTNPAKTNHAEGPL
#oth            111111111111111111111111111111111111111111111211111111111111
rrnB0179        ------------------------------------------------------------
pNG1020         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0046        :::::::::::::::::::::::::::::::::::::::::::::V::::::::::::::

consensus       PTDETETDQQYWTTRDRDAICATATARVDEAGESDDIDRTAAYRDQALVFLLAYSGARSA
#oth            1111111111111111121111111111121111111111......1.............
rrnB0179        ---------------------------------------M::::::T:::::::::::::
pNG1020         :::::::::::::::::::::::::::::K::::::::::::::::::::::::::::::
rrnB0046        :::::::::::::::::E::::::::::::::::::::::::::::::::::::::::::

consensus       ELVAVSDDEERNGLRWRHVNLEAGTMQVFGKNRTRESAPILDDALRPLRRWKQLREPDEN
#oth            ...................1.1.......1..............................
rrnB0179        :::::::::::::::::::::::::::::V::::::::::::::::::::::::::::::
pNG1020         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0046        :::::::::::::::::::D:D::::::::::::::::::::::::::::::::::::::

consensus       EAVFPRLDNAAKALDPTPSITTQSARNILADLCEWSEYEFEDPLKPHGARRGLG------
#oth            ................1.....................1..1............111111
rrnB0179        ::::::::::::::::S:::::::::::::::::::::::::::::::::::::EKSIAR
pNG1020         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0046        ::::::::::::::::::::::::::::::::::::::D::E::::::::::::::::::

consensus       -REIYR----ENP--QLAQDVLRHKSIETTHEGYAQEAAKRTRD-EANNIISDKE
#oth            1.121.11111..11.11111..11111111111111111.11.11112.11212
rrnB0179        T:SWH:TCSGT::SR:PTKAT::RLRNGLVTRRTTSSLVR:LT:ADYAG:HQF:K
pNG1020         ::::::::::::::::::::::::::::::::::::::::::::::::E::::T:
rrnB0046        :::L::::::::::::::::::::::::::::::::::::::::::::::::G:-