1 genomes BUD4475 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3370 rrnB0156 - - - - - - -

Pairwise sequence scores
Consensus score	7169	rrnAC3370	rrnB0156
1999	rrnAC3370	2948	1152
6322	rrnB0156	1152	7111

968 symbols
consensus       MKLRTQISILLIVFAVLLSGIVFAGFQLNKESVTGRQLDETTQHSERIAAGLDTRLKGLK
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC3370       ------------------------------------------------------------
rrnB0156        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       RTVRLQATNPAIAAHGTPQQHYALKTMVNETMFNGVSVIHRNGTMTGIAAGLDPETRSEL
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC3370       ------------------------------------------------------------
rrnB0156        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       IGSNFSDRHYFQRARNGETYISAPVVADSGNYIVTISTPIYRDGAVVGTLNAALHLQDSS
#oth            1..111111111111111111111111111111111111111111111111111111111
rrnAC3370       M:::--------------------------------------------------------
rrnB0156        :::D::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       IFRMASKTANRDSSVFIRTQSGNQIYNRSAHLSSDPVTANATVNETGWIVQVQTSRNVLA
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC3370       ------------------------------------------------------------
rrnB0156        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       GDLRTVTIYQLGGIGLVLALISGFGSILYTQILRYHRQLVRGFEALQRQEYGQQVAEEAT
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC3370       ------------------------------------------------------------
rrnB0156        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       GDWGQIFTAFNELSQTLAEYEEERVKHRNELQQERDRFRRLFQSIPEPAVVVEYTGNKTL
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC3370       ------------------------------------------------------------
rrnB0156        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       IHNVNEAFEDSLGYQASNAVGGDINDFIVPDGSLEEAESIDQLSSSGKQVTHEVRREAAD
#oth            1111111111111.1..1.11111111111111111111111111111111111111111
rrnAC3370       --------S:::P::::S:-----------------------------------------
rrnB0156        :::::::::ETF::E:::::::::::::::::::::::::::::::::::::::::::::

consensus       GKRDFLLRSTPAVDGEDEVYFGVYIDITDRKQQERELTETNSVLSSVLDNMPVGILIEDA
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC3370       ------------------------------------------------------------
rrnB0156        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       DRTITTANKKLLDILDVSLTPSGLIGCEYAEIAETLKTQFADPDQFNDQINEIHSARDAV
#oth            11111111111111111111111111111111111111111111111111111.111111
rrnAC3370       -----------------------------------------------:::G:L:V:----
rrnB0156        :::::::::::::::::::::::::::::::::::::::::::::::ETV:K:::T::::

consensus       FDEELLMADGRILARSYVSYSLPDGTGNIWLYRDITKNRQRERKLRETLEKMRRLIAAED
#oth            111111111111111111111111111111111111111111111111111111.11..1
rrnAC3370       ---------------------------------------------------::::M::::
rrnB0156        :::::::::::::::::::::::::::::::::::::::::::::::::::TQK::Q::S

consensus       QDEAAAIAVEIANAILDFPLSSVHLEAKDGELEAAAISDALREGVGDAPADQRKADRHEH
#oth            11.1.11...1.111.1..1.1.11.11.1..1111.11111.1.111.11111111111
rrnAC3370       :S:V::V:::T:T::::::F:-:FW::T:S::K:VT::EP:::H:-E::::PG:VM::::
rrnB0156        I::::T:::::::QT:S:::::::::R::::::P:::T::FE:::::T:VY::T::NSSI

consensus       DKLLWDQYESDETQRVLTDEGAEIEEAASDAPLHGGIIQPLANHGLLTAGGDERARFDER
#oth            1111.11.1.1..1...11111111111.11.11...11.1111.1.1111.111111.1
rrnAC3370       GSW::K:::::::::::VS:----:K:::::::::::TV:::EY::::::T::::EPT::
rrnB0156        :::V::V:T:G::-:::::T::::P:TI:GM:SS::::::MT:::V:VTL::SPN::::F

consensus       DQQLADILGANLASTLDRINRERQIERQRDNLDLLNQIVRHDIRNDLQIILGRADLLADR
#oth            111.111..11111..1..11111111...............11.1..111..11..111
rrnAC3370       ET:::::::K:VL:::E::E:::ELK::::::::::::::::LT:H::T:T:::E::R:Q
rrnB0156        ::Y:VEL:::I::T::::::QKQ:::S::::::::::::::::::::::L:::L::::E:

consensus       ANDAALEHVNAAQRCAQNAAELLQSARNLAEVLRQNDTDSEPIALNRVLRQQIEDIRAAN
#oth            111111...111111111.1..111.11.11.11.111111.11.11.11111.1.1111
rrnAC3370       CSGD:::::DGI:ESS:S:::::ET:G:::T:M::T:WET::V::GP::SSVT:::T:TY
rrnB0156        ::::QS::::::L:::E::V::T::::E:S:::L::G:::K::S::::V:::::E::S::

consensus       TDAQITINDEIPDVRIRANELLDSVIRNLLKNAIQHNDKADPEITIDAIDDGDYVNLRIA
#oth            ...11.11111.1.111.1.111..1..1.1.......111.11111.1.1111.1111.
rrnAC3370       ::::V:VP::F:S::VQ:D:::S::F::V:T:::::::S:T:SVVV::T::::V::VIV:
rrnB0156        :::E::::GS::::M:::::MF:::::::::::::::::Q::::::S:::QKE::Q::::

consensus       DNGPGIRDAQKRSIFERGEKRLDSEGTGIGLYLVRTLIDAYGGDVWVEDNNPRGAVFGIE
#oth            .....11.1..111.11...111.1...1.....1..111..........1.....1111
rrnAC3370       ::::::P:E:::TV:::::::P::::::V::::::::V::::::::::::E:::::V:LT
rrnB0156        :::::V:::::E:::GK:::E:E:S:::::::::S:::ES:::::::::::::::::V::

consensus       LPKAADDA
#oth            .1.111.1
rrnAC3370       ::::::::
rrnB0156        :V:---:S