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1 genomes BUD4478 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1035

rrnAC1036

 - - - - - - -

Pairwise sequence scores
Consensus score4200 rrnAC1035 rrnAC1036
3502rrnAC1035 4199 1701
2399rrnAC1036 1701 3189 

567 symbols
consensus       MYKIPRGKHIAICAIAVALILAAPLSVMSSAAATPVADGQSTAVTENVDVWERSLLPLRT
#oth            .1.1.11.111.1111.1.1..1.1..11111....111.111...........1.1...
rrnAC1035       :::T:::::TV::::T:L:V:::::::-T:::::::D:::T:::::::::::::::::::
rrnAC1036       :V:::IV:P:::FVM:::::::G:V::::TVG:::::ES::VS:::::::::::P:T:::

consensus       SSEGPTAIAAPRTFINIESAATGDLPLNRREATIHERNESINLSFEPRIGAGTRALAGDE
#oth            1.1...1.1..1.1..1...1...1...1111....11..1111..111....11.....
rrnAC1035       ::T::::::::E:Y::::::Q:::V::::D:Y::::TG::VD:T::STT::::TG:::::
rrnAC1036       T:::::T:V:::::::V:::::::::::K:T:::::::::::M:::::::::::::::::

consensus       AQLLAVRLDEAPESAGANEGDIRGDLADILANNSNANSSELLDDAEGVDAIDDNGELNAS
#oth            ......1.1.1.111.111111111.11111.1..11.1.........11.1.1.1.11.
rrnAC1035       ::::::::S:G:::::FS::SV:T:::S:FT:D:::::V::::::::::S:::::V:ET:
rrnAC1036       ::::::K:::::TTE:::TS::P:S:G:V::::::IT:::::::::::G::S:E::::::

consensus       YTPDSGGAYAFALVTVDDGQEGLSVSDNNVSTNGNVTVVGVEQAIVQDNASTVEPTANDV
#oth            ...1...1.1.1.....1.11......1...11..........11..111....1.111.
rrnAC1035       :::::::::G:I::::::::-:::::::::::D::::::::::T:::ESP::::T::D::
rrnAC1036       :::E:::V:::::::::S:E:::::::G:::V::::::::::::V:::::::::::Q:P:

consensus       AAGNNVSLDIATEIEDDAVTHAVLLFDQDELQQRSSTVRVSGDINENFSQDQITVENSFD
#oth            11.1..1..11..1..11.....1.1111....11...1.1.111.1..1..1.......
rrnAC1035       :::D::::::E::L:::::::::::::E::::::T:::::T:::D::::E::V:::::::
rrnAC1036       NP::::T::V::::::EN:::::V:VK:G::::Q::::T:::EL::S:::::::::::::

consensus       NVNGVASMDDNASIAGGNLSTNQAIPAAGLQGLFGFVLSEAEPDADGDDMIQASATTVSA
#oth            1.1..111..1111111111.1111.11.11....1.1...11.11.11111....1..1
rrnAC1035       G::::S::::D:TFSS:DST:VG:M:S:::I::::::::::S::ST::::M::::::::D
rrnAC1036       ::S:::TV:::I::::V::::::S:::I:V:::::T:V::::S::::E-V:H::::V:::

consensus       AADANVDVETLDSWLNGAYQYVHVAVGEDSNEINSDTGTVAISDSDDGGDPNNGNDDGND
#oth            11.11.1.......1..1.1.......11.11.1.1....11.1111.11111.111111
rrnAC1035       :::TT:::::::::S::T:T:::::::::::::S:T::::TL::::::S:S:D::::SD:
rrnAC1036       DS::::T::::::::::::::::::::TE:GT:::::::::::---P::G:D::GSP::G

consensus       NNDNNNADGDNNNANDDNDDNNNDGSDNSDDNNNNENDNSDDNNDNDNDDSDNGDSDEDS
#oth            11111.11111.111..1.11111111111111111111111111111111111111111
rrnAC1035       ::::::D:S:D::D::::::::::::::::::::::::::::::::::::::::::::::
rrnAC1036       GGPPD::G:P::T:D::E:EEE--------------------------------------

consensus       GDDDSDNESTEEDTADETTTDTDTEAGGGADPTEAATTAGGGAQQPDNTDTTGTEGTVET
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC1035       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC1036       ------------------------------------------------------------

consensus       TSSSGPGFTVLVAVLALLGAGFLARRD
#oth            111111111111111111111111111
rrnAC1035       :::::::::::::::::::::::::::
rrnAC1036       ---------------------------