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1 genomes BUD4487 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnB0180

rrnB0295

 - - - - - - -

Pairwise sequence scores
Consensus score17548 rrnB0180 rrnB0295
16303rrnB0180 17505 2425
3670rrnB0295 2425 5002 

2316 symbols
consensus       MNNNARGGLRPDIDDNEGLIVSASDGEIVDTTELLPRVTGYSKAELLAMELAALFCAADG
#oth            .11111.111..1111...1..1...1..11.1111.......1...1.111...11111
rrnB0180        ::GS:::::C::P::D::::::D:::M:::V::P:::::::::S:::G::T::::WLR::
rrnB0295        :S::EC:SP::::GT::::V:::::::::E::G:VS:::::::::::::P:S::::::GT

consensus       DNHDGQTRAALSETDGRSHGLLECADGSRITVEQRSYTVRIEAQTHVCTTLRLPAAEEAA
#oth            .1111111111...1...111......1.1....1.....1111.1....111.111111
rrnB0180        :::S:H:::PV:::E:::::::::::::::::::::::::P::E::::::VLF:GDG:::
rrnB0295        :DS:K:VGT:::::::::YVV::::::T:T::::H::::::GP::Y:::::::::::PGS

consensus       ASAPGRDEPPMSTVDALRRLQRAAMDDDSVADTAQRLLALGCDYLGADAGALARIDDATY
#oth            11111111111111..11..111..111..1..11...1...1....1...1..1..1..
rrnB0180        :::TS::::::::::::S::::T:::::::E::VE:::::::E::::S:::V::V::D::
rrnB0295        LTL::K--------::F:::HK:::ESE::::::::::T:::::::::::::::::::::

consensus       TVEHTSGESDVYEQGRAMPLEETIADEHVTGAASDRAAFTVAEGQRESLDADVRGATACA
#oth            1..1.11.11...1.111.11...11.1...1111111.1.11..11.1.1111..1111
rrnB0180        V::::T::T::::::::V:F::::I::::::G::E:R:::::K:::::P:S::::::M:V
rrnB0295        :::Y::S::T:::P:QS:::G::::S:V::::VT:P:T:V:G:::HS::::--H::Y:G:

consensus       PVIVGDDNYGVIEFTGLATRERAFGQREREFVDLLAQWLGNEIERRRRSERLERCEMALE
#oth            ..1..1.1...1....1....11...1.....111.....111111.1111...1.111.
rrnB0180        :::::::::::V::::P:::::P:::::::::E:::::::::LG::::V:D:::Y:SIV:
rrnB0295        ::T::E:T:::::::::::::G::::S::::::FT:::::SK::QE:Q:K::::::::::

consensus       AVDDPAHALDTDGCFTFVNDAAKREFGYGEEIIGEHVSIGMEAADIERIQGQIKKLLGTD
#oth            1..1.111.1..111111111111111111111111111111111111111111111111
rrnB0180        :::::MY:::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        T::E:::T:E::------------------------------------------------

consensus       ERSATAEFELQVEDGERRIVENRLALIGDDEFRGTAGVLRDVTARQERKRELEQYETVAQ
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       TASDVIITIDTDSVVQNVNPAVSAVFGYEPEELIGQPMTALIPERLRAGHAAGISRYLST
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       GERALDWEYIEIPGCRADGTEVPLGVSFSEYEFQGEQYFTGIIRDISERKESERELESFQ
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       RAIEEAADGVAILADGEYEYVDQTHVDMYGFDEKDQLLGESWRKLYDDEETARLEAEAFP
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       ALEADGHWQGMVTGTRPDESTFPAELSLTIIDDGRLVCTVRDETERKARERELALKNRAM
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       DEATVGIQITDPTQADNPLVYVNDGFERMTGYTAEDALGRNPRFLQGADTDPEQVARLRE
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       AIDADEPVSVELKNYRKDGTPYWARLSITPVTGENGTVTNYVGIQQDVTERRERKRQADA
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       RVDFLERMYEVTTDPETGFEEKISGLLEAGCEHLDLSYGYLSRIDMDDDPTPGIHVISTV
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       GSHERIQPGESGLLSESYCHRTIDHEGALALTDAAESELISDVAYETFGLDTYIGGNVVA
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       GDELYGTLCFASNESRDALFGQFERSLVSLLGRWVGYEIEQRDAREKLRQQQERLELTLS
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       GTNTGITEWNLETDALNSDDTFIDLVGQDVDTAEEYFECVIHPDDREHVRETLEANLAAR
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       APTKIEYRVQTDDDDTRWLQSRAVPTYDDDGSQESVLAIVTDISTRKAKECERQRNERRF
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       KSLFADPGMLVGLLDTDGTLLEINETALKYVEQTAAELAGQPFPETPWWSHSEALQQDLR
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       EWIRRAADGEYVEYSAIHPGPDGDRSHIEGVIRPVTDTDGTVTSLLISGRDVTERERQRS
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       ELRDRQRKLDLVLSNTDTTFAEFDFAAGSVQWDEAMGSSEFGSPETLDEFFETIHPDDRE
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       RIRSEIETAGDSGEPNSVEFRFVEPDGTVVWVVGQAVPVTDDEGNLTERVVGIATDITDL
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       KQREQALEDSRQRYQTLLQAAPDPIFVADAETGEIVEANAAAEELRGQPRDDIIGRHQTE
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       LHPEEAGGLYEDVFEQAFDDASTITELPDGTQPELATPDGETVPIEISAAAVSLPDGPVL
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       FGVFRDVSDREERKRELELKERAMDEANVGITISDPDREGNPLVYVNDGFVDQTGYSREE
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       ALGRNCRFLQRDDRDQSALDELRKAIASEEPSIVELRNYRKDGEQFWNRLSVTPIYDDVG
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       TLANYIGIQQDVSDEKTREQRIRALHGTTRELLEADDKDEAVAKALDTLSEELDFQLAGV
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       YLREGDELVHAGTVGATPDATPNRIERGRTPLWDAIESGESMMIEDYGSLWGDIERGDVS
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       KGLYIPVGEQGVFVVGAADSTRLDESEQRLVEVLAGNFASVLDTLVRQDELFEERERFQL
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       LTESIEEYAFLVVDDDGTIQTWNSGAETLFGYDADTAVGMSMGQLHRESDRESGVPDRLL
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       QQARIGSESSHEGWRVRADGSEFYADVRYAKLETDDGESRGYAKIVRDMTDERRQRRRTE
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       RFVEESEDVVTVVDPDGTVTYASGSAKGVFGYEPDSLAGENIFDYLHPDGREHATETFFS
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0180        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0295        ------------------------------------------------------------

consensus       CVENSESTTAECRLRAPDGGWFNVEGRCRNMLDDDAIDDILSHLRNTTAQRQRARRFDGI
#oth            11111111111111111111111111111111111.1.11.111.11.1111...1.111
rrnB0180        ::::::::::::::::::::::::::::::::::::::G::VY:::V:E::E:::::E::
rrnB0295        -----------------------------------:V::L:::T:G:::SK::::L::SV

consensus       FNQTYQFTALLNPDGTVIEANDAALDFGGLNRADIVGKHFADAPWWSHSDTERDRVRDAL
#oth            ........1..1.......1...1.1...11.111...1..11......1.1..1.1...
rrnB0180        ::::::::G:::::::::::::::::::::D:DE::::::::I:::::::::::N:::::
rrnB0295        :::::::::::E:::::::T:::T:E:::F::::M:::P::E:::::::E:V::::W:::

consensus       ERAADGEFARYETEVRDRDELGTIDFSVKPVTNQDENVNLLVVEGRDITARQRRRDHLQV
#oth            1...1..11.......11111.....1.....11.11.11.........11111.1....
rrnB0180        ::::S:::V:::::::GV:G::::::::::::D:::::T:::::::::::::Q::Q::::
rrnB0295        K::::::S::::::::::Q:V:::::T::::::E:GC::M:::::::::KQS:H::::::

consensus       MQRVMRHNIRNDLTKLRGRTEALADEPDPDARARMFARIEAILDKWERMTERMRQIRQVL
#oth            ....1..11.....1...1.1..1111.11111111111.11....11..1111.111..
rrnB0180        ::::F:::::::::V:::::::::::S:::K::Q:V:TV:KT::::::::T::K:V:E::
rrnB0295        :::::::HM:::::::::F:G::YTL::SE:QS:Y:E:::::::::TD:::KT:::G:::

consensus       DERRHHQAATAVDELVARAIARADAMYADAAIRNALDDGDSPHAPAVLREAVSELLGNAA
#oth            1111.1111.1.11..11.111111111111.111.11111111.1.11...1...1..1
rrnB0180        :S:Q::ET::E:PV::E:::TETT:::P::::ET:::GV::VT:::::S:::T:::K::V
rrnB0295        E:Q::S::T::::::::H:T::::EFV:ETR:::D:P::VT::L:T:M::::::::::::

consensus       DASADENGQIGCTLSRPADDWLEITIADNGFGLPDAEADVIRTGEETPLNHGQGIGLCMV
#oth            111111111111.111111..111.11.1.1.1.11.11.11.......1....1..1..
rrnB0180        EV::P:SVEL:::--::NE::::L::T:C:P:M:ET:I:::E:::::::T::::L::W::
rrnB0295        ::TP:S::::TV:::QT::::VG::V::::::::::::S:L:::::::::::::::::::

consensus       RMIIKQVGGDVSADVTDNGTEVRLRIPASESLRKRG
#oth            ..11.....1..1...11..1.1.11.111111111
rrnB0180        ::V::::::E::::::::::T::::::L--------
rrnB0295        :::V::::::::V:::QG::::T:HV::::::::::