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1 genomes BUD4491 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1077

rrnAC1078

 - - - - - - -

Pairwise sequence scores
Consensus score3150 rrnAC1077 rrnAC1078
2258rrnAC1077 3095 623
1515rrnAC1078 623 2357 

416 symbols
consensus       MTDETTNNDGAQSTNTPATTGDDSSQSATEAETTAEDTAADVSAKMDRIRRRAVIAGALG
#oth            111111111111111111111111111111111111111111111111.1..1.11111.
rrnAC1077       :::::::::::::::::::::::::::::::::::::::::::::TSG:::::::::T::
rrnAC1078       ---------------------------------------------::::T::T:LSS:-:

consensus       SPALFGAGFAAVDSFGIPSMPSIIGLGAASPLEQARSGNAGAGQMDRANTTVDERAAQNI
#oth            .1111111111111111111111111..111111.1..1111.1111111..11111111
rrnAC1077       ::::::::::::::::::::::L::V::::::::::::T:T:::::S:TV::::Q::::L
rrnAC1078       :--------------------T:LT:::T-----:V:::P:R:S-G:N::::QM:ETED:

consensus       GPANRCRQLHIAQPMRNALDRDADDQVRLTRDNDAAVFTIAETISGDASTVRTSAEGKCR
#oth            1111.1.11111111111.111111...111111...1.111111111111111111111
rrnAC1077       -:T::Y::::::E:V::M::::RG::::V::G:::::Y::S:::::::::::::::::::
rrnAC1078       :S:E:::---LP:S:MD::GVQ::Q::::VY:GE:::::V:-------------------

consensus       VSFLEDDSFGDERRWGNNRGRDRCRAAGEAFRVAIDARVIAANLDEEQAKARGELIERTL
#oth            11111.11.1111111111.1111111111.1.11111.1111.1111..11.11..1.1
rrnAC1077       :::Y::G::S::::::SL::D:N:SL:::::D:E::P::P::D:SPSE::E::::::-::
rrnAC1078       ---:S::T::----YI::N::E:L::KSGS::::VS:D::DS:::::::::E:GF::::T

consensus       NMEQSELAVLAPHGGQIQPGTDGQAERLRAQLSDADATKWCLQGWGPDGGAFRRWHIPSA
#oth            1111..1........1.111.11.11.1111111111.1.111.1111111.1..111.1
rrnAC1077       ::GG::Y::::::::::::F:G::VT:::SEF:::SV:S:K:::Y:S:T-S:Y::YV:::
rrnAC1078       ES:::::::::::::Y:EW:::T::::MT:::---::::::SS::S:G:::::::::T:T

consensus       AIHPDCFPALADISDREFDHAVAFNGINEKHIGIGGAAPEDIRRDVADAIDEALDCDGSP
#oth            1111111.1.111.1111.1..1.1.11.11111.....111.11.1.1.111111.111
rrnAC1077       ELSTI:Y:R::EL:EQTY:Y::S:::::::T:YV:::::::::QS:::S::S::PH::::
rrnAC1078       :::::S::::Q:::::::::::::H:WS:S:V:::::::TWL::::R:::S:VV:::---

consensus       VRLATDGHRAADSPQNIINRITANQSNGIQIEQPIADRRERRNLIAAAVADALEDG
#oth            .1.111111.1...1111.11.111.1.11.1..1.1.1111111.1..1111111
rrnAC1077       :K:G-ES:Y::::::TLV::V:E::::::W:G:::::::KYSD::::::GS::F::
rrnAC1078       :::::::S::G:::E::::W:::SG:D:V:::::W:V:D::::TV:D::::VF:VL