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1 genomes BUD4494 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1011

rrnAC1573

 - - - - - - -

Pairwise sequence scores
Consensus score2587 rrnAC1011 rrnAC1573
2363rrnAC1011 2584 1919
2143rrnAC1573 1919 2492 

333 symbols
consensus       MMRDGGRAMADYWDGQSVMITGGAGFLGSHLIDELEARSDDVNIFVPRSNEYDLRNRQDI
#oth            11111111111..1.11..1...........11...1..11.11.....1.....1.11.
rrnAC1011       :V:T::L::SS::E::T::V:::::::::::VE:::::::T:DV:::::::::::E:T::
rrnAC1573       -:T:WH:KT::::::K::::::::::::::::::::R::E:::::::::D::::::::E:

consensus       RRALTDSNADVVIHLAATVGGIGANRENPGRYFYDNAIMGIELIEQARQFDVDKFTILGT
#oth            1..111.11...1.............1...1...1........1.1....1.1.......
rrnAC1011       :::F:Q:G::::V::::::::::::::::::::::::::::::L:M::::::::::::::
rrnAC1573       K:::V:::P:::::::::::::::::K:::K:::E:::::::::::::::G:E:::::::

consensus       ICSYPNHTEVPFSERDLFDGYPEETNAPYGIAKKALLTQSRAYRKQYDFNSIYLMPVNLY
#oth            .....1..1.....1...1.........................................
rrnAC1011       ::::::::::::::D:::::::::::::::::::::::::::::::::::::::::::::
rrnAC1573       :::::K::P:::::::::E:::::::::::::::::::::::::::::::::::::::::

consensus       GPRDDFDLESAHVIPAIIRKCIEARRRGDNAITAWGTGEPTREFLYVKDAARGILDATER
#oth            ........111..........1..11..111....................1...1....
rrnAC1011       ::::::::H::::::::::::::::E:::DS:::::::::::::::::::::::::::::
rrnAC1573       :::::::::TS::::::::::V::N:::E::::::::::::::::::::::D:::T::::

consensus       YDRSNPINLGSGAEISIRALIERIADLTDFEGDIEWDTSKPDGQPRRRLDTSRAKERFDW
#oth            ..1.1.1.....1.1..11.1.1...1.1...1.1............1....1...1...
rrnAC1011       ::::::V:::::::::::::::::::M:::::::K:::::::::::::::::::::Y:::
rrnAC1573       ::E:D:::::::I:T::QD:V:K:::::G:::E::::::::::::::K::::Q:::::::

consensus       EAQTDFEDGLRRTIDWFEASREDYPAGGPRADA
#oth            1.1.1.....1...1.1.111111111111111
rrnAC1011       T:::::::::::::::Y::V:T:::::::::::
rrnAC1573       ::T:S:::::E:::E:::K:F:K----------