|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 8004 | VNG1644 | Hut1992 | NP3346A | Hmu2098 | rrnAC1622 | hla0900 | HQ2859A | HVO_2452 | Hbo2341 |
6558 | VNG1644 | 8086 | 6014 | 6162 | 6130 | 6117 | 6046 | 6038 | 6009 | 6120 |
6863 | Hut1992 | 6014 | 8012 | 6494 | 6616 | 6564 | 6227 | 6208 | 6207 | 6315 |
7025 | NP3346A | 6162 | 6494 | 7972 | 6722 | 6672 | 6431 | 6363 | 6304 | 6500 |
6925 | Hmu2098 | 6130 | 6616 | 6722 | 8093 | 6766 | 6272 | 6164 | 6110 | 6430 |
6983 | rrnAC1622 | 6117 | 6564 | 6672 | 6766 | 7912 | 6384 | 6251 | 6221 | 6373 |
6883 | hla0900 | 6046 | 6227 | 6431 | 6272 | 6384 | 8130 | 6306 | 6365 | 6518 |
6816 | HQ2859A | 6038 | 6208 | 6363 | 6164 | 6251 | 6306 | 14553 | 6368 | 6667 |
6845 | HVO_2452 | 6009 | 6207 | 6304 | 6110 | 6221 | 6365 | 6368 | 7912 | 6741 |
7108 | Hbo2341 | 6120 | 6315 | 6500 | 6430 | 6373 | 6518 | 6667 | 6741 | 8026 |
1928 symbols consensus -----MSDADLSADELTLPIKRTEGDTLEDRLTGNAYHNILPARYLRKDADGELIEQQED #oth 1111211553232.123..1..22.11113.1.2...1..........112.123.51.2 VNG1644 :::::::SE:::::D::::V::VT::S::::::A:::::::::::::::T:::HV:S::: Hut1992 VGGRTV:::E:AV::V::::::I:::::A::::D::::::::::::::::::::V::::: NP3346A ::::M::GQE:::::::::::::::::::E::::::::::::::::::::::::::E::: Hmu2098 :::::::::GAG:::VQ::::::T:::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::NS::::::I:::::::D:::I:E::::::::::::::::::::N:D:::GP:: hla0900 :::::::SD:VAT::VE::::::T:E:::::::A::::::::::::::N::::P::NP:G HQ2859A ::::::DTH:VD::::E::::::T:E:I:Q:::D::::::::::::::::K:D:A:S::E HVO_2452 :::::::::N::T:::V::V:::::E:::A:M:::::N::::::::::::::D:V:T::: Hbo2341 :::::::R::::::::V::::::::E:::::::A::::::::::::::N:::D:T:T::E consensus LFERVAKNIALAEAVFEAEKQDVEVTVTPDQLKPDHPRRDELAAEVFGKGTTADDD-AET #oth 1.3..12.11...1.1.13322322111.111...........31...312234122111 VNG1644 :::::::::::::V:::SDDP---::A::S::::::::::::::::::SDVDP:SET:TV Hut1992 :::::G:::::::::Y::RN::::I::::::::::::::::::E:::::::SIG:::::: NP3346A ::::::::V::::::::::::G::::::::::::::::::::::::::A:V::::::::: Hmu2098 ::D::G::V:::::::::D:RG:D:::::::::::::::::::G::::::::VG:::::: rrnAC1622 ::D:::::::::::::::N::::D:H:S:::::::::::::::D:::::::SV::::V:: hla0900 ::D:::R:V::::::::::::G::::::::::::::::::::::D:::T::::T:::V:: HQ2859A I:::::Q:V:::::::::D:::T:I::::::::::::::::::E::::A:AD:A:T:VT: HVO_2452 ::P:::::::::::::::::R:I:L:::::LI::::::::::::::::::V:::::E::: Hbo2341 ::A::::::S:::::Y:::R::::I:::::::::::::::::::::::::V::E:::::: consensus TLSVYNVNKFAYDTVVPELPD-EVREHVEATADEFQDLMESLSFMPNSPTLMNAGDELQQ #oth 2.122.1.....2.2..1.12122132.252143.214.23................... VNG1644 E:TDS:I::::::::::::D:P:::::::GV:A::::::A:::::::::::::::::::: Hut1992 ::::::::::::E:::::::A:D::::::E::T:::::::N::::::::::::::::::: NP3346A A:::::::::::::I::A:::::::D:::::::A::EQ:::::::::::::::::::::: Hmu2098 E::::::::::::::::::::::L:D:::NV:G::::A::N::::::::::::::::::: rrnAC1622 E:::::::::::E:::::::E:G::D::KS:::A::EQ::Q::::::::::::::::::: hla0900 ::TAH:::::::S:::::::E:G::::::::::R:R:G:::::::::::::::::::::: HQ2859A ::::::::::::E:I:::::::::QH::KSV::::E:::SR::::::::::::::::::: HVO_2452 ::::::::::::::L:::::E:::::V:VEKRET:EE:::Q::::::::::::::::::: Hbo2341 ::::::::::::::I:::::E::I:TT:KDKRET:::M:::::::::::::::::::::: consensus LSACFVDSPADDIDDIHQTAKEAAEVFQ-------------------------------- #oth .........4...2..........1...11111111111111111111111111111111 VNG1644 :::::::::D:::T:::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::E::::::::::::::Q::::::::::::::::::::::::::::::::::: NP3346A :::::::::E::::::::::::::Q::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::D::::::::::::::Q::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::G::::::::::::::Q::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::T:::::::::::::::::::::::::::::::::::::::::::::: HQ2859A :::::::::S:::S::::::::::::::CLTADSTVMLKEKGMVSVSEVETGDQIAQRSD HVO_2452 :::::::::::::T:::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::G:::T:::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A TGFQYKPVEETHAYENAETLTVTLTNGCSIRGTPNHRLMVDDEWTRIDEIQPDQEVHYTL HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A GWLRETNQSPPKLHSQSHTTVNQTADSISPDSSEPIELSESENADTGNRHNSAVAVKQSR HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A TQTQLISDEVVSRPEHTRRPDQLSEELAELLGLWIDTGLWHQSGVQFNVERENIAEYIDQ HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A LSQQLFDTPAAISDTDGTYTVDITDHKLKEWWKANFGGKPDGTQSSYVPQMIKEAPTNVI HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A EAFLRGCFTAEGGLRKDMRPRLCTSSEDSIDDIAVLMMGLGYPVEKSVIRNADGEPYYSV HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A MPATDDGLSAFLHDVGFIDERREIGLSNIESSDSRALNNTHKIEVESIVESPPATVYDIT HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ----------------SGGGMGYAFWKLRPYGDAVGSTGGIASGPITFMRTYDQMCETIA #oth 1111111111111111..........2......4...........1...1.1........ VNG1644 ::::::::::::::::::::::::::Q::::::T:::::::::::L:::E:F:::::::: Hut1992 ::::::::::::::::::::::::::R::::::::::::::::::::::::F:::::::: NP3346A ::::::::::::::::::::::::::R::::::::::::::::::::::::::::::::: Hmu2098 ::::::::::::::::::::::::::Q::::::Q:::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::P:::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::F:::::::: HQ2859A VADNHEYVTDGIISHN:::::::::::::::::S:::::::::::::::::::::::::: HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::F:::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus QGGARRGAQMGVMRVSHPDVIQFIHAKNKDVSLAHTLRLNDPDDFTHNSFADALEEAREL #oth ..........1...1.....11.1.1........31.1......1.112.31..1...1. VNG1644 ::::::::::A:::::::::VE::::::::::::Q::K::::::Y:YTE:SE::::::D: Hut1992 ::::::::::::::::::::::::::::::::::R::::::::::::T::S::::::::: NP3346A ::::::::::::::I:::::::::::::::::::E:::::::::::::::QE:::::::: Hmu2098 ::::::::::::::::::::::::::::::::::E::::::::::::::::E:::::::: rrnAC1622 ::::::::::::::::::::::::::::::::::E::::::::::::::::E:::::::: hla0900 :::::::::::::::::::::::::S:::::::::S:::::::::::::::::::::::: HQ2859A ::::::::::::::I::::::::::::::::::::S:::::::::::T:::::::::::: HVO_2452 :::::::::::::::::::::::L:::::::::::::::::::::::TK:V:::D::::: Hbo2341 :::::::::::::::::::::::::::::::::::S:::::::::::::::::::::::: consensus IDEDGRVPKHLRNAVEGHLSNFNISVGVTDDFMEALENGEEFTFTNPRTEEPHIATPETK #oth ..11.2..1..................1..2..2..411..11......311.11.21.1 VNG1644 ::::::::E:::::::::::::::::::::G::::::A:::Y:::::::G:A::::E::: Hut1992 ::D:::::E::::::::::::::::::I::E::D::Q:D::::::::::GD:::V:A::: NP3346A :::::K::::::::::::::::::::::::G:::::K::::::::::::D:::::::::: Hmu2098 :::::K:::::::::::::::::::::I:::::D:::A:::::::::::N:::V::E::Q rrnAC1622 ::D::Q::::::::::::::::::::::::::::::KA:::::::::::GDA::V:E::: hla0900 :::::K::E:::::::::::::::::::::::::::Y:D::::::::::::::::::::: HQ2859A :::E::::E:::::::::::::::::::::E:::::FAD:::::::::::D::::::::: HVO_2452 :::::::::::::::::::::::::::I::G::K::Y:D:::V::::::::::V:::Q:: Hbo2341 ::DE:::::::::::::::::::::::I::::::::::::::V::::::::::::::::: consensus ELYDMFGLGEHVEVGEELSIPAEELWDDIVEGAHENGEPGVIYLERVNKEHSFDVEEHPD #oth .2.2221..21.12..1.12..41..23113..2.......1....1.11....111111 VNG1644 :M:SRY:::HY:TP::::TL::::::SR::::::::::::::::::::D::::::::::: Hut1992 ::::::::::Y:::::::::::S:::::::::::::::::::::::A::::::::::NS: NP3346A :::::::::D::::::::::::TK::EHMI:::::::::::::::::::::::::::::: Hmu2098 :::E::D:::Y::A::V::::::K::ER:IG::::::::::::::::::Q:::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::Q:::::::::: hla0900 :I::::::::::::::V:::::D:::::MI::::::::::::::::::::::::TK:::: HQ2859A :::ELHD::::::::::::V:::::::H::S:::::::::::::::::::::::::K:SE HVO_2452 :I::::::::Y:::::V::V::K::::Q:I:::W:::::::V::::A:::::::::K::: Hbo2341 :I:E::::::::::::V::V:::K:::QM:D::Y:::::::::::::::Q::::::K::E consensus HRILATNPCGEQPLEEYEACNLGHINLSTLAAQDAPDWRVWSDAHADDYDSLEAAVDAFL #oth .2............................11411......2341312124321142111 VNG1644 ::::::::::::::::::::::::::::::::::::::::::QT:--:F:T:::G:SR:: Hut1992 ::::::::::::::::::::::::::::::::EG::::::::ER::::::DF::::E:Y: NP3346A :Q:::::::::::::::::::::::::::::DL::::::::Y:E:G:::ET:AD:::::: Hmu2098 :::::::::::::::::::::::::::::::D:::::::::::::::E::A::D:::::: rrnAC1622 :E::::::::::::::::::::::::::::::T:::::::::E::::E:::ID::I:::: hla0900 :::::::::::::::::::::::::::::::::::::::::::E:::E::TE:::MS::: HQ2859A :E:::::::::::::::::::::::::::::DK::::::::Y:NNG:A:NN:DD:AE::I HVO_2452 :Q::::::::::::::::::::::::::::V:E:S::::::Y:::S:E:::::::TE::: Hbo2341 :::::::::::::::::::::::::::::::DL::::::::QAENG:::::I:D:::::: consensus EEAIDWEEFDRRIELGTRFLENVVTMSDFPVEKIEQKVREMRKIGLGIMGLAQLYIQLGV #oth 21.3.521134..141...............21..21.121......1......1..1.1 VNG1644 D::M:TDA:Q::::M::::::::::::::::PE:::::S::::::::V:::::::::::: Hut1992 D::::V::LEY:::MA:::::::::::::::::::E:::D::::::::::::::F::::: NP3346A :::::F:AL:G::::::::::::::::::::D:::::::::::::::V:::::::::::I Hmu2098 DD:L:N:::Q:::::::::::::::::::::::::E:::::::::::::::::::::::: rrnAC1622 ::::::D::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::F::::E::DY::::::::::::::::::::::::D:::::::V:::::::::::I HQ2859A Y::::MNA:N::::S::::::::::::::::DE::AT::D:::::::::::::::::I:: HVO_2452 :D:V:::::NH:::S::::::::::::::::::::E::::L::::::::::::::::::: Hbo2341 ::::::::::H::DN::::::::::::::::::::E:::A:::::::V:::::::::::I consensus KYGSEEGNEIARQLMTHINHGSKWASHELAEERGTFNDWDNSKYANPTEYREWFEHHTGL #oth 3..1221111.412.23...4..41.....31..3.32.23..1.2.12.21...221.1 VNG1644 :::::::::::S:::QT:::D::T::::::L:::S:DE:::::F:A::::AD:::::::E Hut1992 ::::D::DA::GH::QK:::D:::::::::::::V::::ED::::D::::::::::YV:E NP3346A :::::::::V:::::R::::::::T:::::::::V:DE::K::::::A:::::::KQ::: Hmu2098 :::::::D:::::I:RQ::::::::::::::D::::DE:::::::D::A::::::SQ::: rrnAC1622 A::T::A::::::T:R:::::::A::::::::::V:TE:E::::::::D:SD:::KQ::E hla0900 Q::T:P:::V::::::::::A::QT:::::T::::::::EE::::::::::D::::Y::: HQ2859A R:::Q:A:A::E::::::::E:::::::::K::::::::TE::::::::::::::::::: HVO_2452 R:::D::::::Q:::::::::::R::::::::::P:EA:ED::::::::::::::::::E Hbo2341 R:::DS:::V::::::::::Q:::::::::::::::E:::D::F:D:::::::::::::: consensus DADEWEDGFPIRNHNTTTIAPTG------------------------------------- #oth ..21.11.12.............1111111111111111111111111111111111111 VNG1644 ::AD:A::Y::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::D:AE::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::A:::A:::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::AE::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 ::AD::::Y::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A ::S::::::L:::::::::::::CVEENSLVSTDEGLRPIKDLDNTTAEFEQWDEIDVGV HVO_2452 :::D::::Y::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A TTDGGTKTATAVYDNGFANVRQIQTESGFNIAATPNHRFRTLSSDGTYTWKEAGKFESGD HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A RVILQRNTFDAGSRVSLEANERADDAQDTTEGPELPGRMTSELAEFLGYFMGSGYISDET HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A HASVDLVVDSDATELNSYLSNLGEQLFRITPAVESQEMSQVLSFRDCHLSRYFEDNGWKK HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A TDTGHNGDASAAFVPEQILEGDEQVVNGFLRGVFEAIGTVSEKIEILTTSTTLADQLQSL HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A LLSLGHVFTRDSTKLVETNNYHDDQLRQRLCGATRREDERFMNEIGSLIEPDELNLSTRA HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2859A DKNDTYPSSVIDHVQTLDGYDSVSESLKSRINQSQVDGTVSRKLIKDIEAETAETVSIAD HVO_2452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus -----------------------------------------TTSMVGNTTGGCEPIYNVA #oth 11111111111111111111111111111111111111111....11........1.... VNG1644 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1992 :::::::::::::::::::::::::::::::::::::::::::::::::::::::V:::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1622 :::::::::::::::::::::::::::::::::::::::::::::I:::::::::::::: hla0900 :::::::::::::::::::::::::::::::::::::::::::::I:::::::::::::: HQ2859A HELTGFYAATVESVTEDTAYTKDISVPSNNTYIADGFVTHN::::I:::::::::::::: HVO_2452 ::::::::::::::::::::::::::::::::::::::::::::::S::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus YYKNVSDDVQGDEMLVEFDDYFLRVLEENDIDVEAVKEEAQEQMANNEFDGVDGLSTVPD #oth ........................2..3.12..21..1...1...3.3...221.3...2 VNG1644 ::::::::::::::::::::::::T::D:::::Q:::::::T:::::D:::::::T:::: Hut1992 :::::::::::::::::::::::::::::G::::T::::::::::T::::::E::::::: NP3346A :::::::::::::::::::::::::::::GL::::::::::::::T:::::I:::::::: Hmu2098 :::::::::::::::::::::::::::::G:::D:::::::::::D:A:::::::T:::: rrnAC1622 ::::::::::::::::::::::::A::D:::::::::Q:::::::::::::::::T:::: hla0900 ::::::::::::::::::::::::T:::::V::D:::Q:::::::T:::::::::E:::: HQ2859A :::::::::::::::::::::::::::Q:::::::::Q:::::::::D:::::::D:::K HVO_2452 :::::::::::::::::::::::::::A:::::::::Q:::::::S:Q:::LSS:::::: Hbo2341 :::::::::::::::::::::::::::A:::::D::::::::::::::::::E::E:::N consensus AIGELFVVTGDLSGKQHAGVQCACQEGVDSAISKTCNFPNDATKEDMDEVYRYIYDHGGK #oth ..1....1.11.2212..21.211.5.1.......1.1.11115.1141.11...31... VNG1644 :::::::::S:::::D::A::T:::N::::::::::::::::SV::::::::::::N::: Hut1992 :::::::T:::::P::::SI::TL:D:::::::::V:A:::S:I::AKD:FE:::E:::: NP3346A :::::::T::A::A:::::::V:::::::::::::V:A:::S:V::AKD:FE:::::::: Hmu2098 :::::::T::::TP:E:::I:::::Q:::::::::V:A:::S:L::AR::FE:::E:::: rrnAC1622 :::::::T:::::A:::::I:V:::::::::::::V:A:::S:T::AA::FE:::::::: hla0900 ::::::::::::::::::S::::::::::::::::::::::::A:E:E:::::::::::: HQ2859A :::::::::S:::::D:::::::::::I:::::::::::SS::::::::::::::QN::: HVO_2452 ::S::::::S::A:IE:::::::L:S::::::::::::::S:S::::::::::::::::: Hbo2341 :::::::::S:::::D::A::::::K::::::::::::::S:S::::::::::::NN::: consensus GVTVYRDGTRSKQVLTTRAQNTEFADMDEEEAAEAIVEQIEEVFGGIEGFLENEDVQAAI #oth ...1...............3.11.122.34.11223132.322.12112..131313523 VNG1644 :::::::::::::::::::D::::SGL::::::A:M:DT:Q:T::::::::::D:I:D:F Hut1992 :::Y:::::::::::::::E::D:::::T::----VIA:::A::::::A::DD:::R::L NP3346A :::Y:::::::::::::::::::::::::A::::::::N:::I::::D::::SDE:AS:V Hmu2098 :::Y:::::::::::::::::A:::::::G:----::A::::::D:::::::H:A::E:L rrnAC1622 :::Y::::::::::::::::::::S:::AD:----::A::::::::::::::D:A::::: hla0900 :::::::::::::::::::K:A:::--::S::::::::::G:::::V:A::D:::::Q:: HQ2859A :::::::::::::::::::::::::--::S::::TL:::::D:::DVDS::D:DT:R:TV HVO_2452 :::::::::::::::::::K::::S--:D::::::::S::RD:::NV:A::DS:E:SDL: Hbo2341 :::::::::::::::::::K::D::--::G::::TLI::::D::::::::::::E:RN:L consensus DAEIERLLAAADGE----ADLAKKRPRPDVLHGVTQRIDTGYGKLYVNINEDPEAERPFE #oth 25324621243245422252321122...2.3.....11.....1..1...112422... VNG1644 G:DLRE:F:TG:DAAFDEE:F:E:Q::::L:::::::V:::::::::T:::N::R::::: Hut1992 :G:::T::GE::::Y:::::Y:::::::::::::::::::::::V::::::::::::::: NP3346A ETDLSE:FETD---::::Y::G:::::::::R::::::::::::::::::::::TG:::: Hmu2098 :QQV:S::EV::::QPETSPF:E:QS::::::::::::::::::::::::::::R::::: rrnAC1622 :DS:QQV:GV:::D:::::EY:E:QT:::::::::::::::::::::::::::::D:::: hla0900 ::::SD::E:TEQPR:::I:YSERS::::S:N:::::VE::::::::T::::-:NGL::: HQ2859A :D::D:V::::::N::::VE:G::::::::::::::::::::::::::::::-D:G:::: HVO_2452 GS:L:--::F::SP::::S:VG:::::::::Y::::::::::::::::::::-:HGE::: Hbo2341 :G::::::::::::::::V::G::Q::::::Y::::::::::::::::::::-AN::::: consensus LFANIGNSGGFTASFTEALAKTISTALRSGVDPEEIADELQGIRSPKVAWDKGEQINSIP #oth ....1.1...1.2........11.21..1....4..131.1.1............11... VNG1644 ::::T:::::::G:::::::::::V::::::::D::::K::::::::::::::::V:::: Hut1992 ::::::::::::::::::::::V:A:::A::::N:::G::::::::::::::::::Q::: NP3346A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2098 :::::::::::::::::::::::::::::::::K::::::::::::::::::::::Q::: rrnAC1622 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::Q::: hla0900 ::::::H:::Y:N::::::::V::::::::::::::V:::::T:::::::::::::Q::: HQ2859A ::::::::::::::::::::::V::::::::::R:::S:::::::::::::::::::::: HVO_2452 ::::::::::::::::::::::V::S:::::::::::N::K::::::::::::::::::: Hbo2341 :::::::::::::::::::::::::::::::::::::S:::::::::::::::::::::: consensus DAIGTAMRRYLDGDIDK-AYPQQQTLTETAEDAAAE------------ATAHETDGGA-- #oth ..2...1....111111111.1.23.2224544346222221222335566442..1133 VNG1644 ::F:::L::::N::V:RA::::::H:::IDA:D::H::::::::::::---:::::::AE Hut1992 :::::::::::::::ER:::::::::E:::DEEDP::::::::::::::MG:S::::::: NP3346A :::::::::::::E:::::::D:A::DQ::KQ:EET::::::::::::--:R:::::::: Hmu2098 ::::::::::::DE:::::::D:A::EQ::::E:GS::::::::::ADPNVP::::::VT rrnAC1622 ::::::L:::::::V::::::D:T::E::::K:EG::::::::::::T::QTQ::::::: hla0900 ::::::L:::::D:V:::GI::::S:DDVESTVESPSQTDGGAVDAGTE:DAPV::P:DA HQ2859A ::V::::::::::E:E::G:::::N:::VGT:TGS:PRVESGSGSDAK:PG::::::::: HVO_2452 ::::::::::::::::::G:::::N:::VEAE:::A:::::::::::EDANAD::::V:: Hbo2341 :::::::::::::E::::G:::::N:::VS:E:G:D:::::::::VEGTD:P:P:::::: consensus --AVADDA----------E-ADP-Q-DNDAQQDLIAAGESPECPECGSMSLYYSEGCKTC #oth 3345343511111122353445476555313221222..1....1.1413.......... VNG1644 SLGGPQGP::::::TGAG:S::AQ:QSQ::T:S::D:::::::::::A:T:::::::::: Hut1992 ::TT:PSE::::::::SV:PTE:SG:---D::E::EN::::::::::::::::::::::: NP3346A ::VS:PTG:::::::GSM:A:S:ND::T::T:S::DS::::::::::::::::::::::: Hmu2098 ADSS:T:::::::::AGT:PSS:GEATDAD::E::D:::N::::::S:L::::::::::: rrnAC1622 :::A:A::::::::::::-:---:-:-GGD:::I:D::::::::D:::L::::::::::: hla0900 PT:D:P::::::::::::-:::DTAGAD::M:E::::::::::::::G:N:::::::::: HQ2859A ::::T::TVSTNRNNGSLPS:NDENN:T:DVDS:V::::::::::::::::::::::::: HVO_2452 ::::D:GS::::::::::-:---:-:::::VA::L::::::::::::E:D:::::::::: Hbo2341 ::S::::P::::::::::NGEPGV:SE:::MD::L:::::::::D::N:T:::::::::: consensus ESCGWSEC #oth 11...... VNG1644 :::::::: Hut1992 :::::::: NP3346A :::::::: Hmu2098 :::::::: rrnAC1622 :::::::: hla0900 :::::::: HQ2859A :::::::: HVO_2452 QN:::::: Hbo2341 ::::::::