|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1985 | VNG0081 | hla0890 | HQ1099A | HVO_1864 | Hbo1739 | NP2274A | rrnAC1186 | Hmu2945 | Hut0723 |
1191 | VNG0081 | 2259 | 827 | 822 | 879 | 864 | 916 | 979 | 1026 | 956 |
1180 | hla0890 | 827 | 2202 | 854 | 968 | 940 | 966 | 906 | 930 | 921 |
1109 | HQ1099A | 822 | 854 | 2012 | 955 | 1064 | 914 | 862 | 891 | 917 |
1319 | HVO_1864 | 879 | 968 | 955 | 1936 | 1191 | 987 | 1048 | 1069 | 970 |
1216 | Hbo1739 | 864 | 940 | 1064 | 1191 | 1957 | 958 | 950 | 993 | 936 |
1224 | NP2274A | 916 | 966 | 914 | 987 | 958 | 1969 | 953 | 1001 | 983 |
1395 | rrnAC1186 | 979 | 906 | 862 | 1048 | 950 | 953 | 2088 | 1273 | 1287 |
1457 | Hmu2945 | 1026 | 930 | 891 | 1069 | 993 | 1001 | 1273 | 2065 | 1302 |
1419 | Hut0723 | 956 | 921 | 917 | 970 | 936 | 983 | 1287 | 1302 | 2033 |
336 symbols consensus ----------------------------------MQVLGIVG---AGATALAERLAARLD #oth 1111111111111111111111111111111111.332223.2223122213432454.3 VNG0081 MLPVVARCWSRAGGPVVPTAQRATLITPARQRTR:KA:SV::PA::DTD:A:AAV::A:R hla0890 ::::::::::::::::::::::::::::::::::::PIS::::::P:::D::GT::D::: HQ1099A ::::::::::::::::::::::::::::::::::::::::L::::QD:G::CSDVI:Q:: HVO_1864 :::::::::::::::::::::::::::::::::::H:::::::::::::T:CD::::Q:: Hbo1739 :::::::::::::::::::::::::::::::::::H:::A:::::P:::::L::IIPH:: NP2274A :::::::::::::::::::::::::::::::::::YTTVV:::::SD:D:A::::VST:: rrnAC1186 ::::::::::::::::::::::::::::::::::::::::::HSDS:K:T:V:::TQ::S Hmu2945 :::::::::::::::::::::::::::::::::::H:::VA:PSD::K:T:V::VCE::A Hut0723 :::::::::::::::::::::::::::::::::::::I:VT:PSN::K:T:V:A:VE::S consensus --GRVATVKHCDEAPT-------------------VDTDGKDT-----AGAATAYGLADD #oth 32.2.1113565575411111111111111111114653562333335343343241432 VNG0081 PR::::::RRD:TVT::::::::::::::::::::PAS-----:::::--T:RSVS:S:H hla0890 ::::::V:DCGG:DGERGEAPGRAAESEVTDGGVA:RR:DS:DEGAAERA:D::IA:DA: HQ1099A :::A::VI:TQETIDQ:::::::::::::::::::TFN:PHN:::::SSDVT:R:D:::T HVO_1864 ::::::::ESLP:SA::::::::::::::::::::-EPEST:-:::::-:V:A::::SP: Hbo1739 ::::::::ESG:WNDE:::::::::::::::::::PTPLSD--:::::--VE:::T:G:: NP2274A :::::GV:R-------:::::::::::::::::::---EAA:PADGST:VG::T:T:G-: rrnAC1186 GT:::::::::TH::D:::::::::::::::::::::::::::VRHRD::::ETVA:T:: Hmu2945 ER:::::I:::TH::D::::::::::::::::::::::E::::ARHRA::::VS:::::: Hut0723 ER:T:G::::V:CE:::::::::::::::::::::L:::::::ARHRA:::DRT::I:-: consensus GSWRASGEDRTLDDALDDLSPDHDYALVEGFSDARIPTVALGDA-----DDADNVVAAAE #oth 25.413.64341234.24.13541.32231434343.21212451222233245523323 VNG0081 :A:A:::A::::::V:A::A:AF::VI::::P::AL:::::::H::::::VP:PD:-T:P hla0890 :::AGR:RVEG:::L::G:A:::::LVAV:E:RL:V:::L::AD:AEPA:VPGS:::::D HQ1099A :H::::::NHSVV:I::E::TTV::T::I:A:N::::::L:ET:VTDIDH:STH::LT:: HVO_1864 :N:VG::D::D::GL:::::AEY::::LS::P:::V:::::AGV:::::-::A::::E:: Hbo1739 S::::::TE:P:ERV:::::TR:::::LSR:PE:TV::::::G::::::-::A:A:LE:A NP2274A :-:::D:G:LSV:G:::R:A::::::::V:VDGV:G:::VA::Y::::D::PE:LL:::: rrnAC1186 :E:Y:T:QS::::ET:::::::Y::V::::Y:::N::K:V:::R:::::EA::P:IHRTP Hmu2945 A-:F:T::::G::ET::E:ARSY:::V:::Y:G:::::::::GR::::::H:GRRL::G: Hut0723 :::FGT::S:::::::EA::T:CA::I:::YA:IDL:QIV::H::::::-:::GML-::A consensus TADDLDLEDIVAAIEDAEPYETLESLVARVKASPDADRAGAIATFTGRVRARDDPDDDPT #oth 62333.324333434362132.132.1352132322221...........221342.42. VNG0081 N::A::T:AVL::V:::PVR:::D::::SL:SHE:SEF::::::::::::E::::::T:: hla0890 AP:QI::DGL:TDLA::::WV:R:A::RQ:E::A:::::::::::::::::::A:N::R: HQ1099A ::TAI:T::V:T:::S:::HI::ST:ID:::S:S:::::::::::::::::::SD::PE: HVO_1864 :::AA:VASLA:E:DSH::HV:::T::E:A::D:LEVY:::::::::::::KESE::::: Hbo1739 DG:E::TD:::::M:AS::HV::ST::EQ::Q::R::::::::::::::::KEGD::AR: NP2274A R:A:::A:Q:QDGLQET:::::::::::A::R:::::Y:::::::::::::KE:A::ER: rrnAC1186 HGA:A::D::LT:M:ERD::I:::T:::D::RD::EVYS::::::::::::QEG:E:P:: Hmu2945 ::S:V:AAAL:E:LH:C::::::G:::::::::S:S::::::::::::::E:::H::T:: Hut0723 S:A:V::::A:EV::SVD:::::S::::E::R::::::::::::::::::RK:S:::E:: consensus EHLEFEKYDGVAEEKMATIREELEARDGVFEVRLHHRTGVVEAGEDIVFVVVLAGHRREA #oth 56.3..2.14..3321221452152....33.411.11.2131.2.1.2111.....511 VNG0081 Q:::::R::T:::QR::::::Q:CE::::YD::M:::::::P::D:V:H::::::::GD: hla0890 T::A::::E:::A:Q:DA:AA::TE::::::::M::::::I::::::::I:::::::G:: HQ1099A VR:R::T::S::DDR:RE:ES::SE:::::A:E:F::::IIND::::::::::::::A:: HVO_1864 LS:::::::::::S::DA:S:::::::::LR:LM:::V::::D:A::::::::::::::: Hbo1739 TQ:T::::::::::::R::ES:IA:::::E::TMF:::::I:D::::::::::::::::S NP2274A RF:::::::A::D:R:D::AT:::Q:::::::L::::::R:PD::::::::::::::D:: rrnAC1186 :L::::R::E::A::::AL:RD:::::::YA:::::K::::D:::::::::I:::::T:: Hmu2945 :Y::::::E::::::L::::DD:C::::::::A:::::::::::::::::A::::::::: Hut0723 :Y::::R::E::TDQ::::Q:::R::::::D:::::::::::::::V:Y::::::::K:: consensus FRTVEDGIDRLKDEVPLFKKEVTVDEEFWVHER--- #oth .11.1...1.1.2...1..1.2.33131.2.21421 VNG0081 ::A:S::::::::::::::::::::DA::R:DIPE: hla0890 ::::::::::::::::I::::S:EA::::::R:E:: HQ1099A :E::S:::N:::A:::I::H:T:IE:D::::::N:: HVO_1864 ::::::::::::::::I::::T:T:::::::D:::: Hbo1739 ::A:::::::::::::I::::T::E:D::::D:D:: NP2274A ::::::::N::::::::::::::EA:T::::::DDR rrnAC1186 ::A:::::N:::E::::::::::::::::A:::::: Hmu2945 ::A:::::::::::::::::::::EDAV:A:::::: Hut0723 ::::::::::I:A:::::::::::S::::A::::::