[L] (RnhA) COG0328 Ribonuclease HI 9 genomes BUD0580 9 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG0255 rrnAC3320 HVO_0732 Hbo0802 Hmu0796 Hut1907 hla0233 NP5188A HQ1228A

Pairwise sequence scores
Consensus score	1503	VNG0255	HQ1228A	rrnAC3320	Hmu0796	Hut1907	NP5188A	hla0233	HVO_0732	Hbo0802
1065	VNG0255	1520	858	973	931	984	930	998	973	971
1126	HQ1228A	858	1520	951	974	1022	967	1014	1041	1108
1145	rrnAC3320	973	951	1519	1156	1066	1070	1031	995	1012
1180	Hmu0796	931	974	1156	1538	1079	1074	1044	1061	989
1212	Hut1907	984	1022	1066	1079	1506	1078	1074	1100	1035
1222	NP5188A	930	967	1070	1074	1078	1484	1097	1068	1047
1282	hla0233	998	1014	1031	1044	1074	1097	1523	1101	1128
1231	HVO_0732	973	1041	995	1061	1100	1068	1101	1495	1176
1217	Hbo0802	971	1108	1012	989	1035	1047	1128	1176	1502

205 symbols
consensus       -----MPTIECDPAEARERLEAAGVSVEDGNTDHERWRAERGGATAVAYDDKVVVQGSDP
#oth            11111..211..253..33.42..34244.1121.2.12242314....3211.1..332
VNG0255         :::::::VV:::IQT::AA:AD::A:FS:::SE::L:H:DL:D:H::::A::L::::GS:
HQ1228A         :::::::SVD:::G::::::TE::IT:MA:::EY::::::::A:::::::ET::::::R:
rrnAC3320       :::::::V::::ETT:::::AD::LDIQQ:::::::::V:Y:::::::::G::::::EGT
Hmu0796         VINET:::::::ETR::::::::::T::A::::::E:::SH::G:::::EG::::::G:T
Hut1907         :::::::V::::::A:::::::::IT::S:::::::::::S::::::::EG:::::::::
NP5188A         :::::::V:::::ER:::::VE:::E::P:::::::::T:YA:G::::::::::L::-:S
hla0233         :::::::::D::::T::AH::D:::RID::::A::::::::E::V:::::::::::::::
HVO_0732        ::::::::V::::D:::R:::::::::SP:::::::::::::D:S::::GG:::::::R:
Hbo0802         ::::::::VD:::E:::QQ:SE::::::::H:EY:::::SH:E:N:::::::::::::R:

consensus       TRLLALLR-DGGGRAHVYFDGASRGNPGPAAIGWVLVTDD-GIVAEGGERIGRATNNQAE
#oth            321311233361..1.2.1...1......111.12112421..121.122..42...1..
VNG0255         :DIT:VVQP:R:::V:A::::::::::::::V:::::SG:G:::::::DT::::::::::
HQ1228A         DD::G:::V:T:::::::::::C:::::::::::::::NE:::I:D:::E::KT:::R::
rrnAC3320       A::E::::GTD:::V:A:::::::::::::SV:Y:::N:S::::T::::T::T:::::::
Hmu0796         A::EG::::EH:::V:A::::::::::::::V:::::::::::::D::::::T:::::::
Hut1907         GK:TGV:T::E:::::::V::::::::::::::::IL:G:G:::T:::K:::ST:::R::
NP5188A         A::AG::Q::::::::I::::::::::::::::::I:::::::::::S::::::::::::
hla0233         :::T:::S:E:::::::::::::::::::G:V::C:::A::::::::::::::V::::::
HVO_0732        :D::::I::PK:::::::::::::::::::::::AI::S::::::::SK:::ET:::R::
Hbo0802         :D::::::::HS::::::::::::::::::::::AI:NSE::::G::S:T::ET:::R::

consensus       YEALIRALEAAADYGFDEIDVRGDSQLIVKQVRGEWDTNDPELRERRVRVRELLEAFDRW
#oth            .4..331223.322211224211..1.221.12.1111.2.3.113..21.11155.22.
VNG0255         :D:::A:::::::F:::D:EL::::::VE::LT:A::::::D::RK:::A::::TG::D:
HQ1228A         :A::E::I:M:RQ:::T:::I:::::::IR::T::Y:::E:T:::Y::::::::QT::::
rrnAC3320       :K:::::V:V:R:::::DVHI::::E:::::::::::::::::::H::::::::TD::D:
Hmu0796         :R::L:V::V:R:H:::::RL::::E::::::::::N::::::::H::DA::G:M::EE:
Hut1907         :::::H:::I:::::::SVE::S::E:A:R:::::::::::D:::::::::::FRE::D:
NP5188A         :::::E::A:::::A:::AV:K:::::::::::::::::::T:::K:::::K:::E:SE:
hla0233         :A:::::::::DE:D:::::::::::::::::::::NA:::::::::::::::::R::::
HVO_0732        ::::VE::SV:EE::Y::V:::::::::::::::::N::::G:K::::KA::::S::E::
Hbo0802         :::::::::::DE:::::V::::::E::::::H::Y:::N:::::::::::::::R::::

consensus       SIEHVPREINDRADALANEALDDA-
#oth            113....22.31..4...1.11331
VNG0255         ::T::::AT:E::::::::::::::
HQ1228A         :::::::DV:SH::K:::::F:HG:
rrnAC3320       Q:::::::::::::E:::D::::D:
Hmu0796         ::::::::::A:::E::::::::::
Hut1907         ::::::::::E:::::::::FE:G:
NP5188A         :LD:::::::::::D:::::::G-:
hla0233         ::G:::::::E:::D:::::::::N
HVO_0732        :L::::::::::::S::::::::::
Hbo0802         :L::::::::::::S:::::::N::