|
Pairwise sequence scores | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2731 | Hbo1463 | HVO_0035 | hla0650 | VNG0321 | rrnAC1803 | Hmu0873 | hla2690 | HQ1492A | HVO_0801 | Hbo0734 | Hut0565 | NP1126A |
1826 | Hbo1463 | 2742 | 1760 | 1666 | 1697 | 1572 | 1558 | 1710 | 1695 | 1736 | 1768 | 1623 | 1680 |
1925 | HVO_0035 | 1760 | 2881 | 1736 | 1799 | 1753 | 1761 | 1816 | 1788 | 1840 | 1846 | 1730 | 1815 |
2032 | hla0650 | 1666 | 1736 | 2975 | 1819 | 1742 | 1727 | 2008 | 1939 | 1954 | 1943 | 1833 | 1929 |
2243 | VNG0321 | 1697 | 1799 | 1819 | 2844 | 1940 | 1940 | 2023 | 2026 | 2049 | 2058 | 2060 | 2097 |
2180 | rrnAC1803 | 1572 | 1753 | 1742 | 1940 | 2915 | 2358 | 1958 | 1956 | 1957 | 1998 | 2072 | 2022 |
2110 | Hmu0873 | 1558 | 1761 | 1727 | 1940 | 2358 | 2702 | 1934 | 1914 | 1941 | 1938 | 2008 | 2005 |
2384 | hla2690 | 1710 | 1816 | 2008 | 2023 | 1958 | 1934 | 2758 | 2226 | 2320 | 2291 | 2130 | 2188 |
2397 | HQ1492A | 1695 | 1788 | 1939 | 2026 | 1956 | 1914 | 2226 | 2829 | 2309 | 2300 | 2137 | 2188 |
2364 | HVO_0801 | 1736 | 1840 | 1954 | 2049 | 1957 | 1941 | 2320 | 2309 | 3067 | 2459 | 2150 | 2205 |
2392 | Hbo0734 | 1768 | 1846 | 1943 | 2058 | 1998 | 1938 | 2291 | 2300 | 2459 | 2937 | 2186 | 2180 |
2289 | Hut0565 | 1623 | 1730 | 1833 | 2060 | 2072 | 2008 | 2130 | 2137 | 2150 | 2186 | 2738 | 2267 |
2368 | NP1126A | 1680 | 1815 | 1929 | 2097 | 2022 | 2005 | 2188 | 2188 | 2205 | 2180 | 2267 | 2858 |
475 symbols consensus --------------------------------------------VGDALPLQAGGGL--- #oth 111111111111111112333233333333244243465544567666644363759311 Hbo1463 :::::::::::::::::MANLFRQLGRMSAQGPPDWLLTGIGLI::F:AV:AVF:LDP:: HVO_0035 MDSLFYQLGKLSASSSSSSSSGAERVDSDPGRLPRWLAPLAVAV:VFG:AVVVFPVTP:: hla0650 :::::::::::::::::MGTQGPRGDAFEIGKATGSIPDAVWQYTAL:GA:VV:FA:LSQ VNG0321 :::::::::::::::::::::::::::::::MYTALSVGTAGAAAA::::AAIF::SL:: rrnAC1803 :::::::::::::::::::::::::::::::::::::::::::MFPATA:::GL:::::: Hmu0873 ::::::::::::::::::::::::::::::::::::::::::::-------------::: hla2690 ::::::::::::::::::::::::::::::::::::::::::::-M:PIT::S:L:FG:: HQ1492A ::::::::::::::::::::::::::::::::::::MDIIVVTGQ:AQ::I:::I::G:: HVO_0801 ::::::::::::::::::::::::::::::::::::::::::::-M:L:A::::L:IG:: Hbo0734 :::::::::::::::::::::::::::::::::::::::::::M:L:PVV::::TLG::: Hut0565 ::::::::::::::::::::::::::::::::::::::::::::MLGTI:::L::AEL:: NP1126A :::::::::::::::::::::::::::::::::::::MPASAEYN:MLT:::I:ETV::: consensus --VVLVGLLLLLLAVVTVYQAVEIVDAYEKKALTVFGEYRGLLEPGINFIPPFVSRTYAF #oth 11767343241422223233322.231121411..1.31132.11.23311...13122. Hbo1463 :::::ISV:A:I:L:A::LS:I:::N::::R:::::::::::::::L:I:::::A:::T: HVO_0035 ::LT:A:YVV:A:::AA::D:::::Q::::RT:::::D:K:I::::L:VV:::::K::R: hla0650 SL:YG:AA:AV:VVA::IVS::::::::D:E:::::::F:K:::::VHL::::::::::: VNG0321 ::TTV::::::V:LA:V::ET:Q:::::::Q:::::::::::::::::V:::::::::T: rrnAC1803 :::GF:TVIF::I:IAL::SS:V:IRP:Q:G:Y::L:T:::V:DQ::H::Y::::DVTR: Hmu0873 ::-----VVF:::::AL::SSIV:IRP:QQG:Y::L:S:::::DQ::H::Y::::DVTR: hla2690 ::L:S::::F:::V:I:LW:SF:::::::::T::::::::K:::::::L::::::::::: HQ1492A ::TS:::::G:F::I:::::M:::::::::E:::::::F:H::::::S:::::::::::: HVO_0801 ::G:V::::V:V::I:::::M:::::::::::::::::F:R::::::::::::::::::: Hbo0734 ::AYM::::V::::::::::M:::::::::::::::::::K::::::::::::::::::: Hut0565 ::FPI:A:V::AI:::::W:M:V:T::T:::::::L::::K::::::A:V:::::A:HT: NP1126A ::IPV:A::::VV:::A:::::::::::::R:::::::::R::::::::V::::::::T: consensus DMRTQTLDVPRQEAITRDNSPVTADAVVYIKVMDAKKAFLEVDDYKRAVSNLAQTTLRAV #oth ......11..3.....1............11.2.121.1.1.12.23.1.2.1..1...1 Hbo1463 :::::::N::P:::::E::::::::::::LR:K::::::::::Q::T:::Y:S::S:::: HVO_0035 ::::::::::S:::::E:::::::::::::R:::PER:::Q::N:R::::L::::::::A hla0650 ::::::::::Q:::::::::::::::::::::::::::::::::::N::::::::::::: VNG0321 ::::::I:::::::::::::::::::::::R:R:::R:::::::::T::::::::::::: rrnAC1803 ::::::::::::::::::::::::::::::::::P::::::::N:E:::::::::::::: Hmu0873 ::::::::::::::::::::::::::::::::::P:::::::EN:E::T::::::::::: hla2690 ::::::::::::::::::::::::::::::::::::::::::::::K::::::::::::: HQ1492A ::::::::::::::::::::::::::::::::::::::::::::::K::::::::::::: HVO_0801 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0734 :::::::::::::::::::::::::::::::::::R::::::::::K::::::::::::: Hut0565 ::::::::::::::::::::::::::::::::::::::Y::::N:::::::::::::::: NP1126A :::::::::::::::::::::::::::::::::::::::::::N::K::::::::::::: consensus LGDMELDDTLNKRQEINARIRKELDEPTDEWGIRVESVEVREVNPSKDVQQAMEQQTSAE #oth 1......1..21.32..31.24..1.......11..1...1..2..21.13...1.11.. Hbo1463 I::::::E::SR:E:::R::HR::N:::::::VE::::::S::K::A:::S:::E:S::: HVO_0035 ::::::::::AR:DH::::::R::::::::::V::::::::::K:::::EN::::::::: hla0650 ::::::::::SR:DQ::D::NE::::::::::::::A::::::S::QE::R::::::G:: VNG0321 :::::::::::::::::S:::T::::::::::::::::::::::::QE:::::::::::: rrnAC1803 :::::::::::::G::::::::::::::::::V::::::::::::::::::::::::::: Hmu0873 :::::::::::::G:::S:::Q::::::::::::::::::::::::::::R::::::::: hla2690 ::::::::::::::::::K::::::::::::::::::::::::::::::::::::::::: HQ1492A :::::::::::::::::SK::E:::::::::::::::::::::::::E:::::::::::: HVO_0801 ::::::::::::::::::::::::::::::::V:::::::::::::A::::::::::::: Hbo0734 ::::::::::::::::::::::::::::::::V:::::::::::::Q::::::::::::: Hut0565 ::::::::::::::::::K::::::::::::::::::::::::::::::::::::::::: NP1126A ::::::::::::::::::K::::::::::::::::::::::::::::::::::::::::: consensus RRRRAMILEAQGERRSAVEQAEGDKQSNIIRAQGEKQSQILEAQGDAISTVLRAKSAESM #oth .2..........1.1..1.5.1.1.....1..................1.....111.1. Hbo1463 :H::::::::::K::::::R:Q:::::::::::::::::::::::::::::::::::::: HVO_0035 :::::::::::::::::::K::::::::::::::::::::::::::::::::::RA:::: hla0650 :::::::::::::::::I::::::::::::::::::::::::::::::::::::R::::: VNG0321 ::::::::::::::Q::I:N:Q:::::::::::::::::::::::::::::::::::::: rrnAC1803 :K:::::::::::::::I:T:::::::::::::::::::::::::::::::::::::::: Hmu0873 :K:::::::::::::::::T:::::::::::::::::::::::::::::::::::::::: hla2690 ::::::::::::::::::::::::::::::::::::::::::::::::::::::R::::: HQ1492A :::::::::::::::::::::::E:::::V::::::::::::::::::::::::::S::: HVO_0801 :::::::::::::::::::::::E:::::::::::::::::::::::::::::::::::: Hbo0734 :::::::::::::::::::::::E:::::::::::::::::::::::::::::::::::: Hut0565 :::::::::::::::::::E:Q:E::::::::::::::::::::::::::::::::::A: NP1126A :K:::::::::::::::I:K::::::::::::::::::::::::::::G:::::::::A: consensus GERAIIERGMETLEEIGKGESTTFVLPQELTSLVGRYGKHLTGSDV--QEGAGLESLDFD #oth ....1111.1.1.25..411.1111....1...11...14.321111424555.2233.. Hbo1463 :::::VD::L:S:QR::ESP:::Y:::::::::L::::RR::DAS:::::AP::::Q::: HVO_0035 ::::::DK:::::AN::TSP:::Y:::::::::L:::::G:S:::::::QA:::::KA:: hla0650 :::::::::::::::::::::::::::::::::::::::A:S:::::::QME::::KE:: VNG0321 :::::::K::::::G::E:::N:::::::V:::::::::::A:::::GDG:SD:::MA:: rrnAC1803 ::::V:DK:::::A:::Q::::K:I::::::::::::::::Q:::::KEN:HS::A:::: Hmu0873 ::::::DK::::::G::GS:::::I::::::::::::::::::::::KEN:HV::G:E:: hla2690 :::::::::::::::::::::::::::::::::::::::A:S::::::::ME::DGKE:: HQ1492A ::::V:::::::::S::E:::::::::::::::L::::RQ::N:::::::E::::::::: HVO_0801 ::::::DK::::::R::Q:::::::::::::::::::::Q:::::::::DME::S:KQ:: Hbo0734 :::::::K::::::H::Q::::::::::::::::::::RQ::D:::::::Q:::D::::: Hut0565 ::::V:::::::::::::::::K:::::::::::::::::::::::QTDGESA::G:::: NP1126A ::::V::::::::::::::::::::::::::::LS::::::::::A:ADQSQL::G:E:: consensus EETRELLGLDDIEEILGQIDEEAEVDVEELEQEAQAIKAGED-ADIKDADEVIEEMDEEI #oth 3111111..111241122225523323452153233337264462374333544142527 Hbo1463 M::::::::::VDD:AEGVESLTN------------------:G:TNNTEIRL::TE:N- HVO_0035 ::::::::::::G::::EL:----------------------:-GVET::ISADAV:I:: hla0650 :::EKM:::E:::SA:E:L:TV:DS:LRT--D:TRDADTAR::V:LARQE:ETR:A:RD: VNG0321 ::::::I:::N:D:::N::T:::D::PAD::EK:E:VQR:::::GLQ::G:::::::A:L rrnAC1803 D::::M:::::::K::::::::::::::AM:E:::K::Q:Q::SGLDN::D::::::A:: Hmu0873 ::A::M:::::::K::::::A::D:::::M::Q::K::H::::SG:V::N:A:::::Q:F hla2690 AD::KM::::::D::::::E:S::M::::::K::E:V:::GAG::::S:::::Q:::::A HQ1492A D::::::::::::R:::::::A::M:L:::::::E::::::T:N::::::QITA:KT::M HVO_0801 ::::::I:::::::::::::QA::MN::Q:::::E:::::AEVN:::SP::::A:A::DE Hbo0734 ::::::I::::::::::::::A::MN::::::::::::E:A::P:::SP:::VA:A:A:D Hut0565 D::::M:::::::K::::::Q::::::A:M:EQ:::V:S:KET:::R:P::::::::N:F NP1126A D:A:::::::N:::::::::::::::PK:M:A::::::S:::P:N:::P::::A:::::M consensus D-------------------------------------DGETERES--------- #oth 8111111111111544332222222112323133343435672557332211111 Hbo1463 -:::::::::::::::::::::::::::::::::::::--------::::::::: HVO_0035 E:::::::::::::::::::::::::::::::::::::::GV:---::::::::: hla0650 E::::::::::::L::::::::::::::::::::::::EA:S::PGN:::::::: VNG0321 ::::::::::::::::::::::::::::::::::::::::TEDTGA::::::::: rrnAC1803 :::::::::::::DDPGTTD::::::::VAGGPDDTTRTS:VDKDN::::::::: Hmu0873 G::::::::::::D::::::::::::::::GG::NAPG::S:DEDDL:::::::: hla2690 V::::::::::::DE::::::::::::::::::::::::V::::::::::::::: HQ1492A Q:::::::::::::::::::::::::::::::::::::::::::AVETERE:::: HVO_0801 QPIKSSDEVVAESEGAGDAAATDGSADANSAGNGQPAA:EADDD::EISFEKDLE Hbo0734 K::::::::::::SSIKEADEVVAEADGESNGSADGTS:E:R:T:KEV::::::: Hut0565 N::::::::::::T:::::::::::::::::::::::::E------::::::::: NP1126A P::::::::::::EGGLD:::::::::::::::::::::ADL::::N::::::::