|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3788 | VNG1987 | NP2522A | hla1287 | HQ3097A | Hbo1845 | HVO_1976 | Hmu2551 | rrnAC3215 | Hut0346 |
2151 | VNG1987 | 3706 | 1785 | 1692 | 1699 | 1680 | 1648 | 1637 | 1666 | 1624 |
2246 | NP2522A | 1785 | 4209 | 1844 | 1765 | 1807 | 1816 | 1817 | 1842 | 1798 |
2524 | hla1287 | 1692 | 1844 | 3876 | 2103 | 2145 | 2198 | 1716 | 1777 | 1778 |
2598 | HQ3097A | 1699 | 1765 | 2103 | 3766 | 2554 | 2521 | 1795 | 1783 | 1752 |
2676 | Hbo1845 | 1680 | 1807 | 2145 | 2554 | 3788 | 2582 | 1848 | 1794 | 1865 |
2728 | HVO_1976 | 1648 | 1816 | 2198 | 2521 | 2582 | 3819 | 1824 | 1857 | 1830 |
2380 | Hmu2551 | 1637 | 1817 | 1716 | 1795 | 1848 | 1824 | 3967 | 2138 | 2080 |
2367 | rrnAC3215 | 1666 | 1842 | 1777 | 1783 | 1794 | 1857 | 2138 | 3780 | 2245 |
2295 | Hut0346 | 1624 | 1798 | 1778 | 1752 | 1865 | 1830 | 2080 | 2245 | 3754 |
610 symbols consensus -MSTLRENWRIILLVVLVLGSTVALFAP----------------------------GLGP #oth 13572131.1142..333241421.24.11111111111111111111111111114746 VNG1987 :::WF::::::AA:::::VA:S:::::::::::::::::::::::::::::::::::I:A NP2522A MNLQ:KKH:::W::::F::I::::::G:LGDDAADEPTGDAAPEIEGEQQGDEMEAAQPD hla1287 MLEPIKN::Q:L::::V:::A:::::::::::::::::::::::::::::::::::QF:: HQ3097A ::IDF::::::::::IV:IV:LF::VS:::::::::::::::::::::::::::::T:AS Hbo1845 ::GR::D:::VL::::FL:V::F:::S:::::::::::::::::::::::::::::T:AS HVO_1976 ::::::D:::V:F::AAI:L::F:::S:::::::::::::::::::::::::::::TM:N Hmu2551 :::G::D::::::::::A:::::T:LV::::::::::::::::::::::::::::::ATV rrnAC3215 :::::K::::VVA::T:L:L:A::::I::::::::::::::::::::::::::::::VP: Hut0346 :-MNI::::::V::::F::::GI:::::::::::::::::::::::::::::::::---- consensus GTAD--------NGGNAAAGGITNLQYGLQLSGGTRIRAPLVGVTAENVDFEP------- #oth 5465311222127556353634...21.12.2..22221142.5.133142631111111 VNG1987 SANT::::::::S:QQ::T:DP:::N:::E::::V:L:TTVT::::DG:SVT:::::::: NP2522A :DP:GEQPVGQV::DV:T:SQ:::::F::E:::::QV:::FI:M:VS:LE:G:::::::: hla1287 Q::PG:::::::ENVSE:QQ:::::::::D:A::::V::::::Y::TE:::GG::::::: HQ3097A :PDS:::::::::SAVVQQSSQ:::::::E:A::::V::::::::::E:E:::::::::: Hbo1845 EP:NA:::::::AP:::T:T:P:::KF::E:::::::T:::::L:::::Q:ND::::::: HVO_1976 ----::::::::QSPIGEDDSA::::F::::D:::::::::::::::D:E::G::::::: Hmu2551 A:G:N::ATAQTD:A::S:A::::::::I::D::S:::::I::I::::::IQ:VGRGDET rrnAC3215 ::S:::::::::TE:AG::NQS::::::I::::::::Q::I::T:::G::VA:::::::: Hut0346 ----::::::::VT:G:DD:::::::::I::D:::S:Q::A::I:::D:NVRF::::::: consensus DEERDVEQAIADEL-GADPADVRA-----SAATGTVEVTQE----NVTTAELRAALDAAG #oth 34453213533441332354.13114211634422.11265111121255324321334. VNG1987 :N:GEIATR:STA::DV:RG:::::::::RP:::S:::Y:-::::::S:SS::TT:ED:: NP2522A ::QG:I::TLQ::::DLGTG:::::::::D:ED:::::F:DEYVGGIERSDFA::MQE:: hla1287 :QPD::AR::::::EN:SAS:IT::::::VP:ESA:D::ET::::S::E:QF:::M::S: HQ3097A ANA:E:::R::TAID::G::::I:RPV::TET:::::::V:::::G:S:T::QSI:EST: Hbo1845 ::P:V:::NV:A::E::TSS::T:RL:::::NAS:::::A::::::I:EQ:F:S::::S: HVO_1976 :S::V::RQV:AQIA:::A::IIVRT:::G:ESS:::A:I::::::::ADD:S::::::: Hmu2551 N:TIAI:DELVSQ:::V::V::N:RAPNEPN:D:::::YT::::::::Q:::A:::QEQ: rrnAC3215 AD:A:LA::T::R:::L::I:::V::::::NQ:E::::FSN::::::S:G:VE:::E:E: Hut0346 QQ:TAL::NLSES::SL:L::I:V::::::NESS::::FVR:::::::HDQ::N::N:E: consensus YA--PGDVRDGVTGATRDEMVRVINDKINEAGLSGGSVQQVTTATGQ--HFILVEVPGRD #oth .512533.16...44..344241153114231.2.1213434244.5114223111.232 VNG1987 :S:::DS::R:::Q::::NI:SI:GS::DAT::G:AE:KDIE:SA:AQA:Y:V:::::QN NP2522A :SVDT:::GM::::D:::GVED:L::RLR:R::G:::AA::SAP-::::Q:MV:::::A: hla1287 ::::YE:::S:::QE:::VAQ:::E:::D:T:::::T::::QSL::E::Y::::::::EN HQ3097A :T::AST::T:::ET::Q:V::ILEN::::::::::T::E::::G:G::::::I:::NE: Hbo1845 :Q::YET::E:::A:::E:V:G:L:::::::::::::A::::::::::::::R::A:N:: HVO_1976 ::::H:E:::::::T::A:T:::LQS::::::::::T:::::::::E::::::::::N:: Hmu2551 :DVSES:::::::R:::::::E::DE:LSQSA:::::::SAQS::::::N:VVI:A:::: rrnAC3215 :E:::SE::P:::RD::EN::S:::::LR:SA:T:::::::SSPG:R::S::S:TA:D:G Hut0346 :Q::::T:::::::Q::ED::D::R:::T:SA::::::SRLNAIE:-::NL:SITA:D:: consensus RSEVRSLVEERGTVRVDAYYPG--DNGSYV---REQVLSQDDFADIGTAQEDQSG-GA-- #oth 4341431252..3.4242522612311352121655216232254214133626462411 VNG1987 A:Q:Q::IQG::Q:TL::::::::S::TN::::NAT::RG:ELVEVDQPKR::N:RP-:: NP2522A :ET:VD:IG:::Q:EIW:LF:::::D:D:E:::TRSL:D:::L::::Q:RQ:D--::Y:: hla1287 ::S:T::L::::::QI:IA::T::E::TA::::E:E::T:::::EL:S:AQNDR:T:::: HQ3097A AAS:::::S:::::V:Q:H::-::QDDI:T:::QQT::Q::N:QS::S:::G:::::::: Hbo1845 T:::QK::S:::::V:K::::V:EQ:::TTYK:SKI::ERE::Q:::::::T:::PAV:: HVO_1976 Q:D:VD::G:::::QI:I:::TGT::::RTYET::A::T:A::TS::::::S:T:S:::: Hmu2551 ID:L::I:AN::I:::YGG:AA:::::TF:::::Q:IV:RE:IDG::N:RKVDGRQ:Y:: rrnAC3215 :E:LIG:L::::V:::Y:VHDN:TE:::::::::::::::G:::G::A::RSETQ::T:: Hut0346 :E:L:::LN:::I:::Y:VH:D::E:::F::::PS:::G::E:GR::::::REVAD:TEA consensus FVPVTVR-------ESAAERFQQAMVDTGFAQPGGS---R----CDY------EENPNNS #oth 411132411111113322631443343422444526111111231513111126534454 VNG1987 ::::QLS:::::::AE::Q::TGD:TQY::TSQA:I:::-::SN:RF::::::---::G- NP2522A Y::IRLD::::::::Q:GP::G:::R:H::D:D::V:::::::::N:DLSRSL:::LDDE hla1287 Y::::::NTAPEGEQ:P:HS::::VA:R:::AAYN:NQD::::::::::::::S:::DDV HQ3097A Y:::::::::::::::::NE::::T:::TL:R:::T:::::::::T:::::::-SRDQ:: Hbo1845 --::::K:::::::::V:PE:::T::::RV:R:::::::::::::E:::::::DQ:::S- HVO_1976 ::::S:::::::::DDP:AE::T:IQ:::L:::::T:::::::::T:M::::::DGGR:T Hmu2551 R:S::I:::::::::D:VDQ:LDGVRA::LDE:NTA::::GAIS:E:N:::::A::::Q: rrnAC3215 H:::::K:::::::Q:V:::YAND::EA::GSGSTC:::::::DS::D:::::H::LQ:: Hut0346 :::::IN:::::::DDV::::::D::EY::N:DRN-:::-:::::G:D::RSQIT:VSAV consensus TEPCLLTVLNGEVVNSFGMDPGLADSMASGEFANDPSFRLQTN-NMSEARELAINLRAGA #oth 546..333111.3133311414.342335.412521413321613423.44222212..2 VNG1987 -GY::::K:D::E:YNAS:G:T::RTLS::K:V:N::::ITA::S:TA::N:QV::Q::: NP2522A PGR::M:::D::::FAA:VN:N:SS:F:::A:DD:::Y:TT:T:SFED::D:E::M:::: hla1287 SN::::LTVD:::::::::::D::::::::SW:T:GG:::T:G:EF:::ERI:::::::: HQ3097A ::::::L:V::::T:::::A:R::::LRG:SW:Q::V:Q:::A::V:::Q:V:::::::: Hbo1845 ::S:::V:VD:::::::::AGR::G::QR::W:K::G:Q:::L:S::::QQV:::::::: HVO_1976 ::G:::L:V::::::A:::SG::::T:RA::W:GA:::Q:::R::T:::Q:I:::::::: Hmu2551 SGK::IAS::N:::TAK:VS:::VQLF:D:S:::::T:VIE:::TRE:::NIELS:K::Q rrnAC3215 QAD::V:T::::P:FIG:V::::GQ:YRN:::::N:Q:IM::S::::::T::ELA:K::R Hut0346 DDY::V:T::::I:F:G:V:GD:GR:F:::G::T:::::MT:GE::TQ:KD:E:S::::R consensus -LPAPLDL---DNGTSSYISPAQGENFKTDSLITGIAAVLAVSGMVFLRYGDPRVALPMI #oth 1.1141132135523254232221351264..21.24.22..132123..33241.3..2 VNG1987 ::::EITV:::--QN:Y:VA:SFAQKY:PL::V::L::AI::AI::L::::E:KI:I::V NP2522A ::RTE::I::DNR:::FFLL:SLA:R::AL::V::A::IF::AV:::F::RK:E::A::L hla1287 ::::D::I::SGQ:::RS::A:::::Y:NY::V:::L::F::A:::::::RE:A:::::: HQ3097A ::::K:::TGD:G::T:F:::S:::::R::::LA:LV::F::::V:::::R:A::::::: Hbo1845 ::::K:::SGE:G::T::::SG::AS::I:::::::I:::::::V::V::S:VK::A::: HVO_1976 ::::R:::SGE:S::::::::S:::S::F:::::::V:::::A:V::I:::K:Q:::::: Hmu2551 P::::::F:::Q:AQTTSLE::LADQ:::N::::::I::::::IA:Y:::::::::V::: rrnAC3215 :::::::F::::SAE:QTL:S:LAQE:QQR::L:::L::I:::LV:Y::::R:E:::::: Hut0346 :::::::F:::E:ANYQELE::L:QQ:R::::::::M::::::::I:F::Q:V::::::: consensus VTALSEVYILLGFAAAIGYPLDLSHIAGFIAVIGTGVDDLIIIADEVMQEGEVSSRRVFQ #oth 2.121..33....114322112.111....1.1...1...1.....114225141311.2 VNG1987 F:::A::V:::::::VS:LA:::::L::::::::::::::V:::::::T:-Q:::S:I:: NP2522A L::G::::::::::::V:L:::::::::::::::::::::V:::::I::Q:D::TSK::E hla1287 ::::A:::A::::::LLS::VE:AV:::::::V:::::::V:::::::S::::N::K::D HQ3097A :::::::L:::::::G::::::::V:::::T:::::::::V::::::LA::G:::::::: Hbo1845 :::::::V::::::::::::::::V:::::::::::::::::::::::A::::::::::: HVO_1976 ::G:::::::::::::::::::::V:::::::::::::::::::::::G::S:K::K::: Hmu2551 :::::::LL::::VS::QF:::::::::::::::::::::::::::IL:REG:ATG:::: rrnAC3215 :::::::F:::::V:FVQ:::N:::L::::::::::::::::::::IL:Q:K:ETG:::: Hut0346 :::M:::FV::::V:LVQ:::N::::::::::::::A:::::::::IL:RE:IATD:::: consensus SRFRKAFWVIGAAAATTIIAMSPLAVLSLGDLQGFAIITILGVLIGVLITRPAYGDILRR #oth 1..11.1...........2.....21.1....3...12..1..11...1......12..4 VNG1987 ::::::L:::::::::::L:::::::::::::R:::LV::::::::::V:::::::V::: NP2522A :::K::::::::::::::L:::::::::::::::::::::V::::::::::::::::::I hla1287 ::::R:::::::::::::::::::M:::::::S::::F:::::::::::::::::::::: HQ3097A ::::R::::::::::::::::::::I:::::::::::F::::::V::::::::::::::A Hbo1845 :::::::::::::::::::::::::::::::::::::F::::::V::::::::::::::A HVO_1976 ::::R::::::::::::::::::::::::::::::::F:::::IV:::V::::::::::L Hmu2551 N:::::::::::::::::::::::T::G::::T:::::::V::::::::::::::::::: rrnAC3215 ::::::::::::::::::V:::::M:::::::S:::::::V:::V:::V::::::::::S Hut0346 N:::::::::::::::::::::::T::G::::S:::::::V:::::::V::::::NF::: consensus LVTDDR---- #oth .215451111 VNG1987 :L:T:T:::: NP2522A ::LE:D:::: hla1287 :L:VR-:::: HQ3097A :T:GNL:::: Hbo1845 :T:N:::::: HVO_1976 :L:E:::::: Hmu2551 ::L:EEERSE rrnAC3215 ::L:ED:::: Hut0346 ::L:T-::::