| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 5619 | hla1704 | HVO_1778 | Hut0413 | VNG6294 | Hbo1645 | NP2708A | rrnAC2018 | rrnAC1171 | Hmu3121 |
| 4528 | hla1704 | 5624 | 4130 | 4165 | 4227 | 4372 | 4196 | 3843 | 3925 | 3899 |
| 4665 | HVO_1778 | 4130 | 5680 | 4030 | 4302 | 4451 | 4251 | 4101 | 4117 | 4036 |
| 4770 | Hut0413 | 4165 | 4030 | 5479 | 4462 | 4415 | 4511 | 4177 | 4166 | 4109 |
| 4871 | VNG6294 | 4227 | 4302 | 4462 | 5667 | 4479 | 4563 | 4119 | 4097 | 4067 |
| 4798 | Hbo1645 | 4372 | 4451 | 4415 | 4479 | 5496 | 4509 | 4133 | 4179 | 4072 |
| 4889 | NP2708A | 4196 | 4251 | 4511 | 4563 | 4509 | 5597 | 4185 | 4086 | 4040 |
| 4617 | rrnAC2018 | 3843 | 4101 | 4177 | 4119 | 4133 | 4185 | 5738 | 4410 | 4320 |
| 4617 | rrnAC1171 | 3925 | 4117 | 4166 | 4097 | 4179 | 4086 | 4410 | 5946 | 4534 |
| 4515 | Hmu3121 | 3899 | 4036 | 4109 | 4067 | 4072 | 4040 | 4320 | 4534 | 5757 |
763 symbols consensus --------------------------------------------MSKSNQDWWPNQLDLE #oth 11111111111111111111111222222233232232334434466446422134.312 hla1704 ::::::::::::::::::::::::::::::::::::::::::::-MQG:T:::::::N:D HVO_1778 ::::::::::::::::::::::::::::::::::::::::::::::G:DHN::::::::: Hut0413 ::::::::::::::::::::::::::::::::::::::::::::------------:::T VNG6294 :::::::::::::::::::::::::::::::::::::::MENEDHNFGTS:::::::::: Hbo1645 ::::::::::::::::::::::::::::::::::::::::::::------------:N:: NP2708A ::::::::::::::::::::::::::::::::::::::::::::::IDYKKL::EA::F: rrnAC2018 :::::::::::::::::::::::::::::MLKTVLMPSPSKCSL:A:RD:::S::::R:D rrnAC1171 MFFTRCYFFTHIQRFVCCRRILLTVKMAETPNSDMSGATGGRSKRP::::::::SK:N:: Hmu3121 :::::::::::::::::::::::MADNSPTSGTELSTSGSTAWPERT::DE:::ER:S:: consensus ILDQNARDVDPMGEDFDYAEEFQELDLEAVKADLEELMTDSQDWWPADYGHYGPLFIRMA #oth 1..1.21322.52321...11.13..222..4.1.321.2.11.......1...11.... hla1704 :::E:::NAG::D:E::::AA:E::::D:::::I:DV::T::::::::::T::::::::: HVO_1778 ::::::QQT:::::E::::::::Q::Y:Q::::::::::::::::::::::::::::::: Hut0413 :::::::::S:YDA:Y::::A:E::::::::E:::::::::K:::::::::::::::::: VNG6294 :::::SQQ:::Y::::::::A:ED:::A:::D::::M::::K:::::::::::::::::: Hbo1645 :::::::QT:::::E:::::::EK::F::::E:I:AV::T::E::::::::::::::::: NP2708A S:::::QH:::KD:::::::A:::::::E::Q:I:SV:::::E::::::::::::::::: rrnAC2018 ::::::::A::R:TG::::::::::::D:::::::::::S:::::::::::::::::::: rrnAC1171 :::::::::G:VED:::::::::K:::::::S:::::::S:::::::::::::::::::: Hmu3121 :::::V::A::L:::::::::::K:::::::::I:DVL:::K::::::::::::FM:::: consensus WHSAGTYRTTDGRGGAAGGRQRLPPINSWPDNANLDKARRLLWPVKQKYGRKLSWADLIV #oth ........25......1..2..11.22.....1.......1.1.1.1...331..2..11 hla1704 :::::::::H:::::::::::::::L::::::V::::::::::::::::::::::::::: HVO_1778 ::::::::AH::::::S::H::::::S:::::V:::::::::::::K:::NQ:::G:::: Hut0413 ::::::::::::::::::::::F::LD:::::::::::::::::I::::::::::::::: VNG6294 :::::::::F:::::::::::::::VD:::::V:::::::::::I::::::::::G:::I Hbo1645 :::::::::V::::::::::::::::S:::::V::::::::::::::::::::::G:::: NP2708A ::::::::::::::::S::Y:::::VD:::::::::::::V:::::::::QN:::::::: rrnAC2018 ::::::::::::::::S:::::FA:L::::::::::::::::::I:K::::::::::::: rrnAC1171 :::::::::A::::::::::::FA::::::::::::::::::L:I:::::Q:I:::::MI Hmu3121 ::::::::SY::::::::::::FA::::::::::::::::::::::::::KR:::S:::: consensus LAGNVALESMGFETFGFAGGREDDFAPDEAVDWGPEDEMETSS-ERFDEDGELKEPLGAT #oth .1..1.2....11.1.21...2.2153.2112....2.2.44241.2324.31422..12 hla1704 :T:::::::::::::::::::::E:K::D:::::::::W:S::A:::::G:S:D:E::N: HVO_1778 :::::::::::::::::::::A::YVG:K:PS::::::W:MT:PD::::::N::::::N: Hut0413 ::::::M::::::::::::::::::::::S::::::M:::S:-::::-:::::EN::::: VNG6294 ::::::::::::::Y::::::K::YT::::::::::::W::T:GD:::A::S::W:::N: Hbo1645 ::::::::::::::::::::::::YV::K:::::::::W:KT:SD::::E:D::::::N: NP2708A :::::::::::::::::::::::::::::S::::::E:::A:-:D:Y::A:::P:::::: rrnAC2018 ::::H:I::::LK:::W::::::A:E::::::::::::::AHQS::RTD::::::::::A rrnAC1171 ::::::I:::::K:::Y::::::A:EE:K::N::::::F::Q-::::::P::IQ:G:::S Hmu3121 ::::::I:::::K::::G:::::A:DT:K::N::::E::::N-::::E:P::IQ:G:::S consensus VMGLIYVNPEGPNGEPDLEGSAKNIRESFSRMAMNDKETVALIAGGHTFGKVHGADDPDE #oth .......1....1.1.1211..2...22.23...1.11.1................1111 hla1704 ::::::::::::::::::::::A:::DT::H:::::::::::::::::::::::::SG:- HVO_1778 :::::::::::::::::::::::::::T::G:::::::::::::::::::::::::SG:- Hut0413 ::::::::::::D:::AP:A::E:::::::::::::E:::::::::::::::::::SG:- VNG6294 :::::::::::::::::::::::::::::GK:::::::::::::::::::::::::::E: Hbo1645 :::::::::::::::::V::::::::QA::::::::E:::::::::::::::::::SG:- NP2708A ::::::::::::D:::::::::A::::::G::::::E::::::::::::::::::::::: rrnAC2018 :::::::D::::::N::PLA::E::::::G::::::E::A::::::::::::::::::E: rrnAC1171 ::::::::::::D:N::P:A::::::QT:D:::::::::A::::::::::::::::::E: Hmu3121 ::::::::::::D:N::P:A::::::QT::::::T::Q:A:::::::::::::::::::: consensus NLGPEPEAAPIEQQGLGWENEYGSGKGPDTITSGIEGPWNTTPTQWDMGYIDNLLDYEWE #oth 11133.11...131....3.34.22.1211.........133.13..21.12...2.3.1 hla1704 ::::D::D:::DL:::::D::H:E::::::::::::::::A:::A::LS:VN:::S:D:: HVO_1778 ::EA::::::::E:::::K:NH:::::::::::::::::TSA::::::::VA:::::::: Hut0413 H:::::AD::::E:::::D::::::::A::::::::::::::::E::::::::::E:Q:W VNG6294 :V:A::A:::::K::::::::F:E::::::::::::::::::::::::S:V::::E:::: Hbo1645 :::::::::::DL::::::::::::::::::::::::::::::I:::::::::::E:K:W NP2708A HV:GP:AD:::DL:::::::DF:E::::::::::::::::::::::::S::::::::::W rrnAC2018 :::DV::D:::::M::::::D:::::AG:::::::::::TQA:IE::N:::::::::::: rrnAC1171 ::::::::::::::::::Q:KN:NS::GEM:::::::::TQS::E::::::N:::::::: Hmu3121 ::::::::::::::::::K::S::-::GEM:::::::::TQD::W:::::V::::::::: consensus PEKGPGGAWQWTTKSE----ELDDAAPDVHDPDEKEDVMMLTTDIALKRDPDYREVLERF #oth 112........214321111215321.21321222211......1...3.1.1.111.21 hla1704 A:R:::::::::::ND:::::::::::G:Q::SD::::::::::V:::H:D:F:A:::E: HVO_1778 AH:::::::::RPAD:SPADKIP:::::A:L::QFV:P::::::::::K:::F:A:::E: Hut0413 :::::::::::::QNG:::::::ES::G:E:::D:::::::::::::::::::::I:::Y VNG6294 :::::::::::::::G::::::NES::G:Q::TDT:::::::::V:::D:::::::::T: Hbo1645 ::Q::::::::::QGG:::::::::::G:E::S:::::::::::::::::::F::::::: NP2708A :::::::::::::E:G:::::::A:::S:DGSS:::::::::::V::::::::::::::: rrnAC2018 ::::::::::::PTD:::::A:ANTV::A:::S::QTP::::::::::::::::::M::: rrnAC1171 :::::::::::AP:::::::::KNSV::A::::::QTP::::::::::::::::::M:T: Hmu3121 ::R::::::::AP:G:::::::E:SV::A:::::TQTP:::::::::::::::::IM:E: consensus QENPMEFQENFAKAWYKLIHRDMGPPERFLGPEVPDETMIWQDPLPDADYDLIGDEEVAE #oth 11213..133.11.....2......11.11..11.1.312....2.11.112111222.2 hla1704 RDD:D:::QS:::::::::::::::::::::::::E:::L:::::::::::I::EA:I:: HVO_1778 R:D:E::::S::::::::L:::::::S:LY:::::::A:L::::I::::::::D::D::: Hut0413 :D:M:::GI:::::::::::::::::::::::::::::::::::::::::::V::S:::D VNG6294 ::::R:::QS:S:::::::::::::S:::::::::E::::::::::::::::VD::A::A Hbo1645 ::::D::::C:::::::::::::::::::::::::::V:L:::::::::::::D::AA:: NP2708A ::::D::::A:::::::::::::::::::::::::E::L::::::::::::S:::::::: rrnAC2018 :::::::GI:::R:::::::::::::::::::DA:::E::::::V::V:H:::::::::: rrnAC1171 :::::::GM:::::::::T::::::::::::::::::E:::::::::::::::::::I:: Hmu3121 ::S::::GMA::::::::T:::::::::L::::::::::V::::I:EV:HE::::A:I:D consensus LKEEILDSDLSVSQLVKTAWASASTYRDSDKRGGANGARIRLEPQRSWEVNEPEQLETVL #oth .14411222.13211.1....1...1.1...........1.....11.1..2.22.132. hla1704 :EGL:TEF:::IADR::::::::::F:H:::::::::::::::::::::::H::E::S:: HVO_1778 ::A:L:::G::::::::::::::::::::::::::::::::::::::::::::D::AD:: Hut0413 ::GT:::::::R:::::::::A:::::::::::::::::::::::K::A::::DE::::: VNG6294 ::S:L:E:E::IP::::::::::::::::::::::::::::::::::::::::::::AA: Hbo1645 ::::::G:::::::::::::::::::::::::::::::::::::::::::::::E::::: NP2708A :::AL:::E:::A::::::::::::::::::::::::::::::::::::::::AA:ADA: rrnAC2018 ::TD::ET::T::::::::::::::::::::::::::::::::::KN::::::A:::::: rrnAC1171 :::::::::::::::::::::::::::::::::::::::L:::::KN::::::::::::: Hmu3121 ::G::::::::TA:::T::::::::::::::::::::::L:::::::::::Q::E::AI: consensus ETYEEIQAEFNDARSDDTRVSLADLIVLGGNAAVEQAAADAGYDVEVPFEPGRTDATPEQ #oth 3.1.4..31..3312.321...........21.1.2...2..11.21......1..4211 hla1704 :::::::::::EL:D:::::::::::::::TL::::::::::H::::::::::V::AQD: HVO_1778 G:L::::ES::G::::::::::::::::::A::I:E::::::::::::::::::::SQ:: Hut0413 S:::D:::::::S::::V:::::::::::::::I:E:::::::::T::::::::::E::: VNG6294 S:::D::::::::::::M:::::::::::::::I:::::::::::D:::::::::::::: Hbo1645 ::L:G::D:::SSQ::E::::::::::::::::::K::::::::::I::::::::::Q:: NP2708A ::::A::E:::S::::AV:::::::::::::::::::::::::::T:::::::::::::: rrnAC2018 A:L::::::::S::T::::::::::::::::::::::::::::::T:::::::::::::: rrnAC1171 G:L:N::T::::S:::G:Q::::::::::::::::::::N::::::I::::::V::G::H Hmu3121 :::::::::::EG::::V:::::::::::::::::E:::A:::E:D:::::::::::A:: consensus TDVESFEALKPKADGFRNYIGDDADRKPEELLVDKADLLNLTAPEMTVLVGGMRALGATY #oth ..22..11.1.31..1...352333431.331..2.1..2.2241111.2..1.411111 hla1704 ::E::::::E:D:::::::L:ENLPHE::HEM::::E::R:SV:::A:::::::V:D:N: HVO_1778 :::::::M:::D::::::::A::V:ER::D:::::::::D:S:H::::::::::::::N: Hut0413 :::::::::::E:::::::V:EE:::::::I:::N:E:::::V::::::L::::Q::::: VNG6294 :::::::::::::::::::L::::E:E:::::::::E::::::DD:::::::L::::V:H Hbo1645 ::::::::::::::::::::ESGV:E::::::::::E:::::VE::::::::::::D:N: NP2708A :::::::::::::::::::LS:E:E:::::::::::::::::P::::::::::::::::: rrnAC2018 :::D:::::::R:::::::AR::V:VPA::::::R::::D::PE::::::::L:S::::: rrnAC1171 ::AP::D:::::V::V::::Q::IT:PA::V:::N::::::::S:L:A:I::::SI::N: Hmu3121 ::AD::::::::V:::::::R:GLEQPA:T:::::::::::GPD:::A::::::T::::: consensus QDSDLGVFTDEPGTLTNDFFVNLLDMDYEWEPVSEDEEVFELRDRETGEVEWTGTRFDLI #oth 22113.11.11.1..1....322.21131..323124521132.11..224.311.3..2 hla1704 DN::H::::N::E::::::::::::F:RD::::D::::::::::H:::::D::A:::::: HVO_1778 :::::::L::::E:::::::E:::::::::::::D:QYLY:V::::::::::EA:::::V Hut0413 G:TEK:::::Q:::::::::::V::::::::G-TD::N:Y:I::::::A:::::S:V::: VNG6294 G::E::I:::Q:::::::::TT:::::::::AA:::R:::::::::::D:::::S:V::L Hbo1645 :G::::::::::E::::::::::::::S::::::DS:D::::::::::::Q:K:S::::: NP2708A ::T:R:::::::::::::::::I:::::::::::::R:::::::::::::::E::::::: rrnAC2018 ::::::::::::::::::::EVV:G::T:::::::SKD:::GY::::::QT:AAS:V::: rrnAC1171 ::T:::::::::E:::::::::::::GT::::AADS:HRYKGL::D::::K:EA::I::: Hmu3121 DG:::::::::::::D::::A:::S::T:::EA::GTQ:Y:GY::D:::HK:::::A::: consensus FGSNSRLRAIAEVYGADDGEEEFVEDFVDTWSKVMKLDRFDLE #oth ...33...11111.12222.231.4..121.211.42.....1 hla1704 :::::::::VS:::::A::::K::D::A:A:::::T::::::- HVO_1778 :::::::::::::::G::::A:::::::A::H:I:SH:::::: Hut0413 ::::A::::VSQA:A:E::::Q::S::::::::::Q::::::: VNG6294 ::::T::::::::::S:AD::L::Q:::::::E:::::::::: Hbo1645 ::::A:::TV::::::A::::K::H:::E::H:::T::::::: NP2708A :::D::::::S:::::::::A:::::::::::::::::::::: rrnAC2018 :::H:::::::::::::GA:A:L:D::::A:H:::R::::::: rrnAC1171 ::::D:::::S::::SA:A:KKL:H:::::::::::::::::: Hmu3121 :::Q::::::::::A::::::QL:::::EA:T:::QA::::::