|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1553 | hla1604 | HQ2782A | HVO_2517 | Hbo2165 | VNG1641 | NP3350A | Hut1993 | rrnAC1627 | Hmu2103 |
795 | hla1604 | 1664 | 519 | 667 | 669 | 587 | 520 | 485 | 444 | 485 |
841 | HQ2782A | 519 | 1657 | 738 | 839 | 460 | 543 | 445 | 424 | 536 |
887 | HVO_2517 | 667 | 738 | 1513 | 874 | 486 | 517 | 492 | 456 | 490 |
905 | Hbo2165 | 669 | 839 | 874 | 1599 | 510 | 543 | 492 | 507 | 541 |
795 | VNG1641 | 587 | 460 | 486 | 510 | 1545 | 557 | 506 | 571 | 597 |
894 | NP3350A | 520 | 543 | 517 | 543 | 557 | 1570 | 640 | 629 | 702 |
828 | Hut1993 | 485 | 445 | 492 | 492 | 506 | 640 | 1639 | 560 | 737 |
846 | rrnAC1627 | 444 | 424 | 456 | 507 | 571 | 629 | 560 | 1629 | 923 |
972 | Hmu2103 | 485 | 536 | 490 | 541 | 597 | 702 | 737 | 923 | 1615 |
239 symbols consensus -MRR-----AARRQLGGAGLAAAAVAAAAVVLSPDAVLAAATWLAADPVRLAAVLVALYL #oth 12521111155645453423544443324444214314363433233.352332342122 hla1604 VN:::::::TGVAGYVL::V:L::LS:V:W:V::::::GPL::::D::::FG:A:I::TA HQ2782A ::::WICSL:EQ:YRFMI::IGVI::::I:T:::TV:FDHI::IV:::::VVL:TTG:AI HVO_2517 :VP::::::PRL----A::::L:::I:GLLFA:::::I:H:::V:::::::VV:VS::A: Hbo2165 ::D::::::LRIDSRAAV:VLLFV::::::L:::E:::SR:A:V:::::::V:AT:::AI VNG1641 :::::::::Y:AWLAV:G::-----::::::VR:TR::G:LRHA::S:-WFP:::::::A NP3350A ::H:::::::TV:::F:::VV::IA:V::IST::Q:LF:::ER:VER:GL::VTV:G::: Hut1993 ::EP::::::V:::::AIA:V:L:T:GV::FG:L::LRSVVETAVGS:LAF::::L:V:A rrnAC1627 ::D::::::L:K:::I:TAGLV:V::IVTTL:T:ER:V:QLLH::DH::Y::G:I:G::: Hmu2103 ::KQ:::::ST::::::VVAF::L:LV:SL::::RQL:DEVAH:S:H:LQFG:A:LV::: consensus VRPLLAWPTSLLSLLVGYGLGLA-GVPVALAGAVLTSLPPYLLARRAG---RA-GG-FGR #oth 1..121..22321323.133.55314.31152224.321113211533111351434332 hla1604 I::::::::T::AVVA:F:Y:W:::::IGV:AM:A:A::::W:::AGRVRA:DGSQIAD: HQ2782A :::::::::TF:AV:I:::I::G::L:L::GLITF::I:::::G:QYD::::::--:-TD HVO_2517 :::::::::T::A:V::::::PV::::F:::LI::::V::F:F:::YR:::G::--:-T: Hbo2165 :::::::::T::A:V::F:F:F:::L:F::TLI::::V::::F:::Y:::::T:--:-:: VNG1641 :::F::::I:A::::::FKY::VV::::::::::A:::::::IG:G:P::::D::RV::: NP3350A ::::::::I:A::I:L::L::V::AA:I::::::V:T::A:A::::L::::HS:E:VLA: Hut1993 ::::VL::V::V:I:::::::IPL::::G:L:::C::::A:::::H:P::::E:R:L::: rrnAC1627 :::FF::::MP::AF::FV::VKY:F::::M::LV:C:I::RF:L::::::EQ:::M::W Hmu2103 ::::F:::I:PI:A::::V:::RY:I::::V::T::TI::F:F::Y::::::SG::L:A: consensus LADAGRRFIEATGDTRGVVAARLLPLPADPVSYGAGIAGVRLRAFVLGTAIGELPWVVAG #oth 353413454341.43122313.14.4.2121.31..52313324244..33.13..1432 hla1604 :CG::E:LAD:::GV:A:T:T::::V:S:A::LA::GS:I:::SLLF:::L:::::AIV: HQ2782A HSKV:AE:::R:::::S:::T::I:A:S:V::V:::::::S:IP:I:::I::::::AI:: HVO_2517 F:GV:E:TV:Q::SVK::A:S::::I:S:V::VA::V:N:::G::A::::A:::::A::: Hbo2165 ::A::ES:V:R:::L:S::LS::V:A:S:V::V::::::::F:W::V::::::T::A::: VNG1641 :SAGS::YFD:A:GL::L::::IA:T::E:::AA::AG::TP:V:GI::LV:::::::GA NP3350A VG:::AVVRRT:::F::I::V::A:::T:::::A::V:::P::PY:::::V::A:::LTA Hut1993 :H:R:SHVV:T::AF:::A::::::::::VI:::::LSS:PT::::A::LV:Q::::L:: rrnAC1627 :G:S:::I::V::E::::L::::S:V::::::::::F:R:SP:S:AV::F:::I:::AVE Hmu2103 :N:::::::SV::A::::L::::S::::::::::::FS::ST::Y:V::FL::I:::FVE consensus VLAGASARTLTTEGLA--IDPHLVVAAAALAVLL-LAPPAYRRIRRARPS--------- #oth .33.4143413452335346273334343312421233232234545575444222111 hla1604 :AI:V:VDR:ANG:T:S::::TVL::M:G:GT:::::G:L::TFI:D:A:PTA:::::: HQ2782A :::::::E::::LS:RTL:Q:Q:IA:GSII::I::IG::IWAW::ER:WELNY:::::: HVO_2517 :V::::VE::::DS::AAVR:EF::L::IAG:SM::V:T::::Y:SGSGA::::::::: Hbo2165 ::::T::ES:A:GD::GA::GR::::::LA:::::F::T::EWYDERADGSDSDAV::: VNG1641 :AV:NTLDAFDPL:AS::VT:AYAI:GG:V:AA:::::I::::L:::---::::::::: NP3350A ::L:::TSQ:::A:A:::SN:L:::T:L:::A::A:SR:::::LADD::LRT::::::: Hut1993 :V::S:M:::AV::S:::GGLP:::G:::VG::V:::S:VI:H:VDYDRLPSMGSSGSQ rrnAC1627 :T::::L:S::LT::TIDAL::VLLFS::::::V:::G::::HVSAPNS:::::::::: Hmu2103 ::::::M:::S::::S::AGL:VLLGSF:V::V::::G::::HV:S::::RN:::::::