|
Pairwise sequence scores | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2484 | HQ2620A | rrnAC1926 | NP4788A | VNG6258 | Hbo3971 | Hmu2935 | HQ3010A | hla1685 | rrnAC3551 | Hmu1284 | Hbo2382 | NP2032A | Hut1446 | HVO_2483 |
1715 | HQ2620A | 2506 | 1727 | 1680 | 1725 | 1772 | 1675 | 1313 | 1426 | 1051 | 1391 | 1350 | 1531 | 1400 | 1445 |
1812 | rrnAC1926 | 1727 | 2546 | 2148 | 1730 | 1791 | 1832 | 1392 | 1439 | 1086 | 1433 | 1444 | 1532 | 1460 | 1406 |
1773 | NP4788A | 1680 | 2148 | 2548 | 1728 | 1800 | 1908 | 1333 | 1393 | 1063 | 1443 | 1400 | 1519 | 1390 | 1400 |
1768 | VNG6258 | 1725 | 1730 | 1728 | 3000 | 1961 | 1845 | 1337 | 1372 | 983 | 1376 | 1388 | 1552 | 1407 | 1387 |
1863 | Hbo3971 | 1772 | 1791 | 1800 | 1961 | 2512 | 2031 | 1417 | 1442 | 1027 | 1438 | 1473 | 1586 | 1439 | 1415 |
1860 | Hmu2935 | 1675 | 1832 | 1908 | 1845 | 2031 | 2530 | 1384 | 1427 | 1054 | 1433 | 1474 | 1544 | 1410 | 1389 |
1804 | HQ3010A | 1313 | 1392 | 1333 | 1337 | 1417 | 1384 | 2486 | 1652 | 1174 | 1634 | 1805 | 1645 | 1689 | 1723 |
1861 | hla1685 | 1426 | 1439 | 1393 | 1372 | 1442 | 1427 | 1652 | 2619 | 1216 | 1704 | 1784 | 1785 | 1793 | 1753 |
1319 | rrnAC3551 | 1051 | 1086 | 1063 | 983 | 1027 | 1054 | 1174 | 1216 | 1846 | 1355 | 1192 | 1240 | 1282 | 1263 |
1830 | Hmu1284 | 1391 | 1433 | 1443 | 1376 | 1438 | 1433 | 1634 | 1704 | 1355 | 2553 | 1685 | 1780 | 1769 | 1703 |
1924 | Hbo2382 | 1350 | 1444 | 1400 | 1388 | 1473 | 1474 | 1805 | 1784 | 1192 | 1685 | 2491 | 1715 | 1815 | 1876 |
2022 | NP2032A | 1531 | 1532 | 1519 | 1552 | 1586 | 1544 | 1645 | 1785 | 1240 | 1780 | 1715 | 2502 | 1834 | 1789 |
1940 | Hut1446 | 1400 | 1460 | 1390 | 1407 | 1439 | 1410 | 1689 | 1793 | 1282 | 1769 | 1815 | 1834 | 2478 | 1851 |
1908 | HVO_2483 | 1445 | 1406 | 1400 | 1387 | 1415 | 1389 | 1723 | 1753 | 1263 | 1703 | 1876 | 1789 | 1851 | 2474 |
413 symbols consensus --------------------------------------------------------MALE #oth 111111111111111111111111111111111111111111111111111122224843 HQ2620A :::::::::::::::::::::::::::::::::::::::::::::::::::::::MERF: rrnAC1926 :::::::::::::::::::::::::::::::::::::::::::::::::::::::MERI: NP4788A :::::::::::::::::::::::::::::::::::::::::::::::::::::::MET:: VNG6258 MRPPAPPTPMATTRIPPYSATTRKSTQERACATPPQSVGTRAFENAYRSPVPSAGMTE:A Hbo3971 :::::::::::::::::::::::::::::::::::::::::::::::::::::::ME::S Hmu2935 :::::::::::::::::::::::::::::::::::::::::::::::::::::::MP::: HQ3010A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::FV: hla1685 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::H:: rrnAC3551 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::---- Hmu1284 ::::::::::::::::::::::::::::::::::::::::::::::::::::MSDQTI:A Hbo2382 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::IV: NP2032A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::E:S Hut1446 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::Q:: HVO_2483 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::Q:: consensus GTILAGRSFEPVEGRVVVEDGEITAIEE---TDVDSTDIILPAFVNAHTHLGDSIAKEAG #oth 113251463314612232332616321222267656453231112111213112212212 HQ2620A ::::R:ETL:::R:::LIDN:::M:V:::::EPNS:::::::::::::::::::V:T::A rrnAC1926 ::::::::::::D:N::::::Y::::::TPARES:HDR:V::::::::::V:::V::::A NP4788A ::V::::::D:MY::::I:E:H:::V:RIDDH:G:ASR::::::::::S:V:::V::::A VNG6258 ::V:::DA:::TR::::ID::R:D:V::::D:H:::E::::::::::::::::::::::A Hbo3971 ::L:V::::::MR::::::::Q:ER:::::::ETT:::::::::::::::::::V::::A Hmu2935 ::V:V:E:::::T::::::::R:E:V:::::::TA::::::::::::::::::AV::D:A HQ3010A ::L:Y::R:D:I:::III:::::VT::::::VA::::::V::::I::::::::::::::: hla1685 ::V:V:PE::::::::I:A:D::VR:::::::S:::D:V:::::::::::I::::::::: rrnAC3551 ----------------------------:::----------------------------- Hmu1284 :::FR::E:::I:::::I:::::A:V:::::AT::PSSW:I:::::::::I::::::::: Hbo2382 ::::T::D::::Q::::::::::::::::::A:::NSNV:::::::::::I::::::::: NP2032A ::::::PDY::I:::::::::::::::::::VETA:S:::C:::::::::I::::::::: Hut1446 ::::R::E:A:::::::::::::::V:::::ASI:TDQ::::::::::::I::::::::: HVO_2483 ::::R::D:D:::::::::E:T::::::::::ATE::::::::::::::::::::::::: consensus VGLSLDELVAPPDGLKHRLLRAADREELVAAMRRTLRFMQRTGTAACLEFREGGVEGVEA #oth 621313421211221112326523554435214111431333..22221...2.45.352 HQ2620A :::::TDA:::::S::::R:S:V:::T:IESIY:::G:::S:::GT::D:::S:LS:AT: rrnAC1926 :::G:E:A:V:::S:::QQIE:::D:T:I:::H:::::::::::::F:D:::F:ID:AT: NP4788A :D:G:EAA:::::S:::QR:Q:::::TA:D::Y:::::::Q:::::F:D:::F:I::AKT VNG6258 ::::::DA::::NS::::R:A:::DDD::::::H::T::HQ:::V:::D:::S:RP:T:: Hbo3971 I:::::KA:::::S::::R:A::::SD::S::::::::IE::::VS::D:::S:TA:AR: Hmu2935 ::::::AA:::::S::::R:AD:::A:::T::::::::::::::VST:D:::F:R::ART HQ3010A A:::::A:::::::::::::DS:TQD:I::::::S::L:TAS:::::I:::::::D:::: hla1685 E::::::::::::::::::::E:SH:AK::::A:S::Y:ES:::GTF::::::::K::A: rrnAC3551 -------------------------------:E:::S::EQA::G:FI::::::::::R: Hmu1284 G::T:E:::::::::::::::Q:S:::::D::A::IS::E:A::::FV:::::::D::A: Hbo2382 A::::::::::::::::::::::SHAAK:E::::S::L::S::::T:::::::::D:::: NP2032A R:::::::::::::::::::DD:S::::::::A:S:Q:::AA::G::I:::::::::I:: Hut1446 A::::::::::::::::Q:::E:S::::::::::S:S::E:A::G:F::::::::S:::: HVO_2483 E::::ED::::::::::::::::STG:KA:::H:S::M:EAG::::::::::::::::DV consensus LREAAAG-------LDIEPVVFGRETADVLDVADGFGASGARDGDFGAERAATREAGKLF #oth 135.436111111133225121.1248211562..1.....3.41.574.512561341. HQ2620A ::S::SK:::::::R:LTAFI::SGED::::::::Y:::::T:D::S:Q:T:AQM:DMP: rrnAC1926 :::::S::::::::::::DFI::SDDSA:::::::::::::N:D::TT::::AE:RAVP: NP4788A :::::E::::::::::::AFI::SDD:A:::::::::::::N:D::TSQ:::AAAR:VP: VNG6258 ::A::DT:::::::V:VT:FI::SGDP::::I:::Y:::::N:N::AD::::CTRRDAP: Hbo3971 :H::::S:::::::VSLD:FI::SGKKS:::::::Y:::::N::::TEQ:::C:KRDVP: Hmu2935 :::::EP::::::::S:D:F:::SGD:S:::::::::::::N:D:::PQ:D:AADR:VP: HQ3010A I:K:GSD::::::::P::T::L:::SEAAMHT::::::::::::E:EQI:S:::D:N::: hla1685 ::D:V::EGVDFGERA:D::::::DDP:::S::::Y:::::::A::D:V:SE:::::::: rrnAC3551 IQD:LSD:::::::SPL:S::L::::T:AMELG::::::::N:SE:::::R:::Q::::: Hmu1284 IEA:L:D:::::::SPVDS::L::::VAAMERS::::::::A::::SH::T::A:::::: Hbo2382 I::::DE::::::::A:D:::L:::::AAMRES::::::::::SE::DL::E:::::::: NP2032A :QA:T:::::::::::::S:AL::D:T::::I:::Y::::::::::S:::T::GR::L:: Hut1446 IEA:LD:::::::::A::G:IL::::I:AMAA::::::::::::E:::::S::::::::: HVO_2483 I:R:LD::::::::R:::A:::::::::AMEI::::::::::::E:::L:N::EA::::: consensus GIHAGERDATDINPALDLDPDFLVHMVHAEAEHLERVADQEVPVVVCPRSNLVTDVGVPP #oth 1.....2.33.131.22.1.111....12464.131233452.212...1.5.121.31. HQ2620A ::::::P::S::HA::A::::L::::::::::::TE:::NSI:::::::A:H:L:::R:: rrnAC1926 A:::::P:::::H::::::::L::::::::::::::::::N::IA::::A:R:LG::R:: NP4788A A:::::P:::::H:::::E::L:::::::::::::::::::T:IA::::A:R:LG::R:: VNG6258 A:::::P:::::H:::::E::L::::::::DT::T:::::S::IA::::A:T:L:::DA: Hbo3971 A:::::P:::::H:::::E::L::::::::QD::Q::TE:S:::A::::A:T:L:::T:: Hmu2935 A:::::P:Q:::H:::::E::L:::::::AG:::::::E:S:::A::::A:T:LG::R:: HQ3010A :::::::::D::T::FN::::::::::YPNTD::T:L:TEQI:T::::::::::G::::: hla1685 :::::::::D:::A:M::::::::::::::PI::::L::RGT::A:::::::::N::::: rrnAC3551 ::::::V:SS:::::::::::::::::::KSL:::::::S:I:::::::::I::G::R:: Hmu1284 ::::::V::S::::::::::::::::::::GL::D::::S:::::::::::V::N::::: Hbo2382 ::::::::PH:VD:::::::E:V:::::P:P:::D:IEAED::I::::::::::G::::: NP2032A :::::::::H::::::::E:::::::::::PL:::::::RGT:::::::::::::::::: Hut1446 ::::::::SD:V::::::::::::::::LD:I:Y::LD:EGT:::L:::::::::A::A: HVO_2483 :::::::::H:::A::::::::::::::P::L:::::E:S:I:I:I:::::::::A::A: consensus IRDLLDRTTVALGTDNVMLNSPSMFREMAYTAKLFDVSAREVLRMATTAGAEIAGLDCGV #oth 253.312.11......12112.......14221451221521.2...41..2121.24.1 HQ2620A ::E:::H::::::::::::::::::::::::::H:::T:::::Q:::I::::AV::N::: rrnAC1926 :ET::EY:D:::::::::::A:::::::E::::T::L:S:T:::::::::::AV:::::: NP4788A :ET::EY:D:::::::::::P::::::::::::T:ELPSQT:::::::::::AV:::::: VNG6258 :PA:::H:::::::::::::P::::::::T:::R:::::TD::::::::::::::::::: Hbo3971 V:E:::H:::::::::::::P::::::::::V:Q:::T:::::::::::::::V:::::: Hmu2935 ::::::H:::::::::::::P::::::::::VRQ:::::::::::::::::::::::::: HQ3010A :S::AE:::L::::::A:::A:::::::::::::A:::::TI:E:::IN:::::N::Y:L hla1685 ::::AE:::::::::::::D::::::::EFA:::S:LP:::I:::::VN::A::::NR:: rrnAC3551 VEA:A:::::::::::::::::::::::EF::::Y:L::::::::::VN::::S::GG:L Hmu1284 :T::AE::::::::::::T::::::::::W::::A::P:V:::::::VN:::::::N::L Hbo2382 V:::::::::::::::::::::::::::EFVS::T:A::T:I:::::LN:::::::NY:: NP2032A VA:::E:::::::::::L:::::::::::V::::C::T:P:::::::A::::::::N::: Hut1446 A:E:F::::::::::::F::::::::::EFA:::Y::::::::Q:::V:::::::::A:: HVO_2483 ::E:V:::::::::::::::::::::::EF:S::A::::A:::::::VN::D::::NY:L consensus IEPGRRAALLVLDGDSDNLAGARDPVRAVVRRAGALDVKRVIL---------- #oth 134143.3.2111..12..4325231311....373.153.464333111111 HQ2620A :DV:::::::II::::N::SR:V::I::::::::P:::T::V::::::::::: rrnAC1926 :::::::::::::::::::SAVA:::D::::::SP::ID:::C:::::::::: NP4788A :::::::::::::::::::S:VA:::D::::::T::::E:::C:::::::::: VNG6258 :::::::::V::::::H::RN:V:::Q::::::TG::::::LT:::::::::: Hbo3971 :A::::::::::N::::::T:SV:::Q::::::TE::::::LV:::::::::: Hmu2935 VA::K::::T:::::::::::S:H::ES:::::T::::E:::C:::::::::: HQ3010A ::::CE:K::::::::::::::Q:I::::::::DRA::SE::T:::::::::: hla1685 ::L:AD:D::::::::::::::H:L:::I::::::A::S::VIGGEPAGRETV rrnAC3551 :KT:QP:R:::::::::::C::QN::::::::::TA::R::VHPMTE:::::: Hmu1284 VAE::D:D:::::::::::S::::::::I:::::VD::E::HYAGKA:::::: Hbo2382 :::D:E:K::I:::::::::::Q:L:::::::::QA:::D:L::::::::::: NP2032A :::::::R:::::::::::::V::::::::::::VN:::N:V:Q::::::::: Hut1446 :::::E:R::::::::::::::E:V:::::::::VD::TD:L:AN:::::::: HVO_2483 V:E::D:K:::::::T:::::VE:V:::::::::QA:::D:Y:::::::::::