|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 6444 | VNG0514 | NP1516A | HQ1701A | hla0344 | HVO_0854 | Hbo0682 | Hut1062 | rrnAC1840 | Hmu0964 |
3795 | VNG0514 | 6444 | 2910 | 2674 | 2994 | 2907 | 3135 | 1658 | 3121 | 3014 |
4023 | NP1516A | 2910 | 6491 | 2793 | 3105 | 3029 | 3232 | 1775 | 3335 | 3351 |
3819 | HQ1701A | 2674 | 2793 | 6550 | 2971 | 3334 | 3643 | 1648 | 2888 | 2888 |
4348 | hla0344 | 2994 | 3105 | 2971 | 6582 | 3417 | 3767 | 1798 | 3343 | 3326 |
4289 | HVO_0854 | 2907 | 3029 | 3334 | 3417 | 6468 | 3924 | 1838 | 3187 | 3250 |
4725 | Hbo0682 | 3135 | 3232 | 3643 | 3767 | 3924 | 6504 | 1982 | 3428 | 3457 |
2501 | Hut1062 | 1658 | 1775 | 1648 | 1798 | 1838 | 1982 | 3833 | 2040 | 2095 |
4340 | rrnAC1840 | 3121 | 3335 | 2888 | 3343 | 3187 | 3428 | 2040 | 6666 | 4339 |
4515 | Hmu0964 | 3014 | 3351 | 2888 | 3326 | 3250 | 3457 | 2095 | 4339 | 6479 |
933 symbols consensus -----------------MRFDRIRLENFKCYADADLRLDDGVTVIHGLNGSGKSSLLEAC #oth 111111111111111112314235231..1.311312.44...11..1.........1.. VNG0514 ::::::::::::::::::::T:LS:S::::::::AVS::P:::::::::::::::::D:: NP1516A ::::::::::::::::::::E::::R::::::ETE:S:RE:::::::V:::::::::::: HQ1701A :::::::::::::::::::::H:T::H::P::::S:D:Q::::I:::::::::::::::: hla0344 :::::::::::::::::VN:::V::S:::P:G::::::TE:::::::::::::::::::: HVO_0854 :::::::::::::::::V::T::AIR:::P:E::E:D:R::::::::V:::::::::::: Hbo0682 :::::::::::::::::::::::::Q:::P::ET::D:T::::::::::::::::::::: Hut1062 :::::::::::::::::V::E:V:::H:::::::::::ER::::F::V:::::::::::: rrnAC1840 MTTARRASRSSCNGGST:K:Q:VK:S:::::D:::::::N:::::::::::::::::::: Hmu0964 :::::::::::::::::-------M::::::GE::::::R:::I:::::::::::::::: consensus FFALYGSKALDETLDDVVTIGADDAEIELWFSHAGGDYHIERRVRASGDRAQTAKCVLET #oth ......23.1131.31322212123212.3.4.2.331124.1214313232134.2.12 VNG0514 ::::::TT:::T::A:A:::::ET:::D:H:E:::::::VH::I::::G:::::A::::: NP1516A :::::::A:I:G::::AIAND::EMS:::::T:G::E:R:::NIKRR:GS:::TT:L::: HQ1701A ::::::AR::::::::I::TDE:::T:::T:::::SQ:::K::L:R::::I:::Q:T:DG hla0344 :::::::::::G::G::I:N:EEET:VD:::T:D:AS::::::LKEYDG:IDH-Q:T::: HVO_0854 ::::::::::AG::E::::T:::::::T:E:V:D::E:R:D::::V:::::T::::::DG Hbo0682 ::::::AR::::N:E::M:T:TEE:::::::T:D::S:::H::L:K::::V:::::L::G Hut1062 ::::::AR:::R:::EL:::::EE:TV::::A:G:ES:::K::::VRD:::T:VE:::DE rrnAC1840 ::::::::::::N:G:::::::::CTV::::::::::::LT:::::T:AQPT:::::::: Hmu0964 ::::::T:::::N::EI:S::::::TV::::::G:::F::::::::T:E::T:::::::: consensus PDG---TVDGARDVRARVTELLRMDAEAFVNCAYVRQGEVNKLINATPSQRQDMIDDLLQ #oth 2331115411111.1321331....21........1..........2.33..121.2... VNG0514 :TD:::RI::VT::E:HISG::::::::::::::::::::::::::A::T::::::A::: NP1516A :N::::::EQVT::E:HIE:::::::D::::::::::::::::::::::E::::::S::: HQ1701A ::I:::EI:::T::::FI:DI:::::::::::::::::::::::::::T:::AI:::::: hla0344 T::SDV:R::::A::EF:::::::::::::::::::::::::::::::RE:::T:::::: HVO_0854 :E::::::E::::::RH:AS:::::::::::::::Q:::::::::::::::::::::::: Hbo0682 ::V:::S::::::::GF:AD:::::::::::::::::::::::::::::::::T:::::: Hut1062 S:::::V:E::::::E::AS:::::H::::::::::::::::::::::GE:::::::::: rrnAC1840 :E::::NYE::::::R:I:::::::S::::::::::::::::::::S:GD::::L::::: Hmu0964 :E::::SF::::A::R:::::::::S::::::::::::::::::::S:::::::L::::: consensus LGKLEEYRERASDARLGVEDVLSNKRGALSQLESQIAEKEEADLHDRLNALESELAEVDD #oth ..2..4..3..12..1.111123532351443431.23.23241123.133224334353 VNG0514 ::::::::Q::G:::::::::K::VE:Q:DR:AD:::D::A::P::::ASHNTA::::TA NP1516A ::T::::::::::::V:::R:::QQETL:EDKRAT:::::QKS::::::::RT::S:LKS HQ1701A ::R::M::::::::::::::I::EQ:::QTEIKA::ER::D:N::EK::EY:AAR:DI:A hla0344 :::::::::::G::::::::::E:R::R:D::DD:::::K:K:::::::G:::D:S::T: HVO_0854 :::::T:::::GN:::::::::TK::SV:EDV::::EA::D::::AT::::::::DSL:E Hbo0682 ::::::::V::GK:::::::::TER:::::KV::::EA::D:G::E::::::T::G:::: Hut1062 ::R::D::K::::::V::GR::EG::ES::::::::EA:V:KE::EQ:::A:::::T:RE rrnAC1840 :::::A:::::::::V::GR:RDD:Q::::::DE::Q::::K:::E:::G::TKES:LQ: Hmu0964 :::::::::::::::V:IGR:RDD:Q:::G:::E:::::::R::Y::::E:R:QI:QTSE consensus EIERYEEQRETAVETRDAAEEVLEEYEEKREELDELEAEIADLRETIAEAERERDELRER #oth 21233152133.421234.53213512131331432123.2122231422.22.333523 VNG0514 D::HF:AE::Q:RQ:::D:AD:::R:::S:TA:ADV:ET:::V::AV:::::::ET:AD: NP1516A D::TK::E:::::::KQE:V::::A::QR:::IET:::D:EE:T:D::A::S:::A:G:: HQ1701A :::::::NKIR:Q::::N:K:I:TSH::TQ:::T::::::D:::M::E:D:ST:ADF::A hla0344 ::D:::T:::Q:K:::E::A:T:STHA::::T:ESVA:::DEIEA::R::::::::H:DA HVO_0854 ::SN::S::DK:KSAL::::AT:D:HA::::R:::I:SA:E::TAK:SAD:TK::D:S:: Hbo0682 Q:::::D:::K:::::EN::::::T:R:::A:::::AED::::::::ESD::K:ET::SE Hut1062 :L:::D::::::R::L:::NSI:::::QR::::::I:S:::E:T:::EAT::::E::ADE rrnAC1840 :::HI:D:KA::E::LTQ::S:::::::::D::ST:::D:E::EA::T:T:T::T::K:Q Hmu0964 ::::I:G:::R::::::D:QSIIDDH::RQA:::::::::DE:::::::T::::::ID:: consensus VRDLRERVEELRDRIDDALAEAELD--AA-DAEAVAARRDELDAREDEIRDRIEDARVAA #oth 233442442324433555326341311431241333233331453334222425351544 VNG0514 :S:H:::ASD:D:EAAALA:DLG::::DP::::DAS:E::AVADQREAVAE:VREVAP:V NP1516A L:S:::TT:T::E:R::::::T::E::R:::::R:EE:LE::SEAIEGV:ET::EK:L:: HQ1701A IETKT:Q::T:LSART:::SS::VT::S::::DTL::::ST::DK:SS:::SLQT::QQQ hla0344 ::EA::::::IEAA::GR:DG:G:::::::SD:TI:E::A:::G::ETV:EELD:E::S: HVO_0854 ::E:DAAAD::ESD::::::R:D::::D::SD::I:DA:EA:S:::S:L::DLSE::TR: Hbo0682 :GEA:DS:::I::::EKKR::TT::::EV:TSD:I::::::::E::A:::SDLT:V:ERR Hut1062 IS:R:D:R::IS:::ESG:DT:::S:::EA:R:::EDLV:D::R:D:::::E::QH:LDL rrnAC1840 :S::QDQR:S::EDLSETV:KTD::SSEP::P:T:D::L:::QS:D::LQS::::Q::D: Hmu0964 I::RK:TLS:RETELRE:V::SA::::S:::S:::SD:I:::T::D::L:::::QQ:::: consensus QAHRNQAESLRERAADLEERAAEKREEAAELEADAEDAREELEERRERLAELDEEIESLR #oth 442534.342223133431..323233.35234433413444443445432123433334 VNG0514 SRLTE::D:AADD::T:D:::ETL:::::A:D:E:D::AAKRDDAAA:IEA::AD::AAM NP1516A :E:L:D:::ATDD:EAHR:::T:A:N:::T::S:I:S:::T::T:ESD:D:::::::T:: HQ1701A TMFE::::R:T::VDE::S::D:LQ:Q:S:A:TAVTK:K:QITTQQNAQ:DIE:QMT:V: hla0344 E:F::::TN:TGK:D:RA:::::IES::DD:GDE::A:AD:AD::ESSVE::R::A:T:: HVO_0854 ::FET:::R:::::D:::S::E::::A:EVDAET:AE:ER:::SF::TR:::RSALDDAE Hbo0682 TMLS:::KK:::::EEF:S::::::SR:D::DD:::::E::::Q:SA::E::EA:L:::T Hut1062 :R::EN:::E::D:T:A::::::::DR:::::SGL:ET:TD::D:::::::::S::::IE rrnAC1840 KD:SST:DA:A:S:::::S::ED:::::::::T:I:A:::TIA::::QISDI:DQ:AD:E Hmu0964 SE:GSE::::::S::T:D:::T::::::ER:::ELA:T::DVR:::DQ:D:I::R::T:A consensus ARF--EDAPVDLGG--------AADHREELREELDDVRERLAELEAELENARDRVAEAEA #oth 14122431243314111111113435314433425342442122314332332233..35 VNG0514 :A:::D::::AF:A:::::::::EAFLDDATA:R:EL:::V:T:R:DRQS:A:::::::: NP1516A EELEG:V:ES:D::DIETRRERLSER:D::::T:AATN:::::RR:D:Q:::E::E::A: HQ1701A EQ:::NNS:AT::K:::::::::TEYL:M:Q::H::I:ND::STR:S:STVQ::RN::QT hla0344 E::AAA::DI:RD:::::::::V::E::A:::RRGE::::I:::S:::K::::::E:::E HVO_0854 ::::::::::E::E:::::::::::LL::R::ARSEA::S:::T:T::K:::E:L::::R Hbo0682 :E::::::::E::E::::::::::S::D:V::T:T:::AE:T:TN::G::V:::LT::RE Hut1062 ET:::T::::E::N:::::::::ESFH::IAD:::A:KSD:TS:::TIKSLEGDIE::QD rrnAC1840 ::::::N::T:RD:::::::::SQSYK:SVASD::NT:QQVT:::TK::SE:ESL::::: Hmu0964 ::::::G::::RD:::::::::VE:::D:VAST:E:A:Q:VT:::TT::TE:E:::::QQ consensus LLDAGKCPECGQPVEDSPHVEAIDEDRERIAELEAELEDLEERVETLEARLERAESLVET #oth .221.1..1.1.112221213524132422231334224214544525543242351124 VNG0514 :::E:::::::::::GA::::RVTD::::V:::D:::A:V:DELDAVAQ:VD:G::::AA NP1516A ::E::N:::::::I::ESD::GLEDA::QVGT::T:V:Q::AE::R:::DH:::VKAA:: HQ1701A :QE:::::T:E::I:E:::::::::YDVQ:ET:TER:SQ::TKQNKVNNKI:S::::::S hla0344 ::A::::::::::::::::ASG::::::QV::::::::EAR::ESD:DD::AELSE:ASA HVO_0854 :R:::::::::::::G::::D::S:REAAVES:::DR:S::SA::SRS:AV:A::A:::V Hbo0682 :R:E::::::::::::::::DS:G:YEA::E::::T:S::R::R:::NS::::::::::: Hut1062 ::::::::::::D::EA:R::TLED::::L:D:R::R:E:::TR::V::::D:::T:::Q rrnAC1840 ::E:::::::::D:AE::::DS:ED::G::::::EL:A:AR:D:SD:KSEH:T:TE:::: Hmu0964 ::E:::::::::D:G:::::AE:::R:D::E:H:R:::AAR:T:T:R:E::::::Q:::: consensus EDRLDTLEERRELVEERIEDARETVDEKRERAEELREAAADLESEAEEKREAATEAREAA #oth 152554455544555524334444444543523422362542441124334513334451 VNG0514 :::V:D::QQ::RAV::RDEQADIA:A::DQ:A:K:DR::::DA:::DA:AD:AAK:D:: NP1516A AAE:QSSL:::QD::SLLDQQ:::IA::ET:::S:::Q:::H:T:::AAE:R:QA:E:R: HQ1701A :RQFE::K::KS:AS:::A::::::N:QT:T:AS:H:N:GE::T::D:::D::ATQMSN: hla0344 A::::EID:TV:TL:D:V:EKHAEA:R:::A:A:K::RVE::RE::::THDV:::K::E: HVO_0854 :T:ASSRRD:LD::D:::A:RE:::ESR::A:::K:::::E:D:::::::::::TQA:R: Hbo0682 :N:IGE:RNS:::F:Q:::::::::E:R:TE::T:::::DK::A::D:::T:::TQA::: Hut1062 :SE--------------------------------------------------------- rrnAC1840 A:E:S:::NN:SNIVQLV:EKEAGL:ADQ::IQT:::E:TAH:::::T:::K:A::::Q: Hmu0964 AAEIE:::T::DD:TRL:::RESGL::EED:I:Q::AD:EE:A:::D:::::::::EQ:: consensus EEAAETVAELNSDLAALDEARERLDRLEDLLAAIADAEDDIERLREKREQLAELNDERRE #oth 3452353462256456445443423534444455436443432231314744351321.2 VNG0514 D:KR::L:A::A:QT::K:RLDA:AD:V:R:E:A:::REAAQ::A:::AA::AQ:EQ::D NP1516A QA:R:AIG:::GRK:D:::R::::ETVAS:::D::EN:S:::S:::R::H:T::::Q::: HQ1701A DSE::K::T:E:K:ETINN::DQ::N:AEIQSE:ENIRAE::::::R::EI:DR:::::: hla0344 :A:::R::::EDA:::V:D:::AVAAI:EQ:S:::::::E:::R:::::N:N:V:::::D HVO_0854 ::V::::DS:E:::DT::DR:D::::V:S:VDTR:EKI:ARD:::::::T:::V:R:::: Hbo0682 :D:::::EG:E:::ESVA::ES:::T:S::RSKLTET:SE::::E:R::SI::::::::: Hut1062 ----------------------------------------------------------:N rrnAC1840 :DCRSV:::C:QERQQVKQSI:N:E:V:::::K:D:CD::::::::::S:Q:::::Q::D Hmu0964 Q:CRDV::DC:QQRQECKTEL:::E:I:T::::VE:C:::L:::::Q:Q:KG:I:::::: consensus RLAEKRERRAELAAEFDEAAVEEARARKERAEEYLEQVDEE-LDELREKRDDLQSAIGGV #oth 3.422.214541445223442451356345156123524541164223412522363132 VNG0514 ::S:L:::KRT:DS:::ADRI:T:::D:D:::D:::::EPK::QA:::D:::::AK::AA NP1516A ::D:::T:K:::E::::D:::T::K:Q:Q:::::IDE:ASY::ETK::E::K:::D::A: HQ1701A Y:QA::D:H:::::DVN::RI:K:QNNH:E:VS:::D:S:K::::::D:::NI::Q::S: hla0344 :::D:::::D:::EAV:::::D:::E:::T::::::K::G::::R:A:R:TE:EN::::: HVO_0854 H:R:R::::D::RETV::E:::G:KQ::KN:AA:::R:ED:V:P:::::::::::RV::: Hbo0682 ::::::D::S:::D:V::ST::::K:K::K::N::::::::::AT::::::S:::D:::: Hut1062 ::RD:::----------------------------------:------------------ rrnAC1840 Q:::::::KQD::ES:::DRI:A::SE:Q::KK:I::AA:A::T:K:::::E::N::::: Hmu0964 :::D::::TSA:E::::D:N:Q::::ER:::T::IQ:A:DK::::::AE:::::ASA:A: consensus ENEIEELEALRERRDELAARVDALETLHEETEELESMYGDLRAELRQRNVETLERMLNET #oth 54223413511242363442344144233234313521321.121122113511231133 VNG0514 ::A:A:::S:::EHERVQS:HQD:QAV:D:VTA::T:::E:::::::Q::SK:::L:::: NP1516A K::L:::::::::::::E:T:ER:R::RD:ART:QDT:A:::S::::Q:::R::A::::I HQ1701A RG:::N:AE:::KHTAIND::S:::::::QV:T:S:T:RE:::D::KQ:::::::::::V hla0344 NS::Q:::N:::E:ES::E::::::D:::::S:::A::::::::::::::AE:::T:::: HVO_0854 :A:L:Q:DD::::::H::E::::::SV:D:VST:::T::::::::::::::V:::::::: Hbo0682 NG:L:Q::::::D::::::::::::S::A::::::A:::::::::::::::::::::::: Hut1062 ---------------------------------------T::S----------------- rrnAC1840 T:::::::S::D::ED:E:TLER::::Y::::::QE:::T::::::::::::::::::Q: Hmu0964 :::::A::E::D:::::::T:EK:A::Y::A::::::::TV:::::::::::::::::DV consensus FDLVYQNDAYSRIELDGEYELTVYQKDGEALDPEQLSGGERALFNLSLRCAIYRLLAEGI #oth 131214112122131224141122111222131311111111211111121211112111 VNG0514 :E::::::S:A::::S:::::::::::::P:E:A:::::::::::::::T:V:::::::: NP1516A :E::::::S:A::::::D::::::::::TP:::D::::::::I:::::::::::::S::: HQ1701A :M:I:D:::::::Q::DA::::IF:::ET::N:::::::::::::::::::::::::::: hla0344 :E:::G:::::H:::::::V:::::::::P::::::::::::::::::::::::::S::: HVO_0854 :::::A:::::::R:::::G:::F::::T::E:::::::::::::::::::::::::::: Hbo0682 :::::G:::::::R:::::::::F::::T::::::::::::::::::::::::::::::: Hut1062 ------------------------------------------------------------ rrnAC1840 ::::::::S::H:::::Q:Q:::::::::P:E:::::::::::::::::::::::::::: Hmu0964 ::::::::S::H:::::::Q:::::::::::::::::::::::::::::::::::::::: consensus EGAAPMPPLILDEPTVFLDSGHVSRLVDLVEDMRD-RGVEQILIVSHDDELVGAADDLVR #oth 214213111111111111131113312412351342511411321111321321114213 VNG0514 ::D::L::::::::::::::::::Q::E:::S::R:L:::::VV::::::::A::::V:: NP1516A D:ES:T:::::::::::::A::::K::E:::S:T::H:::::IV:::::::A:::::::A HQ1701A D:T::::::::::::::::::::G:::::IK::QR::::A::::::::K::IA:::H::T hla0344 :::::T:::::::::::::::::::::R:::E::G:F::R::::::::::::::::E::T HVO_0854 D::::L:::::::::::::G:::::::::::::QS::::K::::::::ED:::::::::: Hbo0682 ::::::::::::::::::::::::::::::DE::::L::R::I:::::::::::::E::T Hut1062 -----------------------------------:------------------------ rrnAC1840 :::::::::::::::::::::::TQ:L::::Y:::EV::::::V::::E::::::::::: Hmu0964 ::::::::::::::::::::::::::LG:I:F:::DV:::::VV::::E:::::::A::: consensus VEKDPTTNRSSVEREDAP-----------LA-D #oth 141232211133536356334322225544242 VNG0514 :A::A:S:::R:STPEHI:::::::::::--:- NP1516A :R:N::::::::::SATTEALP:::::::--:- HQ1701A :K::::S::::IT:I:D:QRAAISAASSNKTPQ hla0344 :::::R::::T:R::::ADLDAAELDIAE::D: HVO_0854 :::N::::::T:::T:::::IV::::EGA::D: Hbo0682 ::::::S:::::RQ::PEELIA::::AESF:G: Hut1062 ------------------:::::::::::--:- rrnAC1840 ::::A:::::R:::VE:T::::::::VAE:::- Hmu0964 :::NS:::::TAQ:VE:G::::::::VVAD:A: