| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 5619 | VNG6199 | hla0898 | HQ2716A | HVO_2700 | Hbo2421 | VNG1472 | NP3998A | Hut0874 | rrnAC0792 | Hmu1777 |
| 4068 | VNG6199 | 5477 | 3810 | 3782 | 3768 | 3861 | 3791 | 3907 | 3900 | 3888 | 3758 |
| 4748 | hla0898 | 3810 | 5594 | 4496 | 4577 | 4601 | 4336 | 4372 | 4367 | 4351 | 4201 |
| 4759 | HQ2716A | 3782 | 4496 | 5594 | 4634 | 4757 | 4322 | 4467 | 4376 | 4407 | 4226 |
| 4806 | HVO_2700 | 3768 | 4577 | 4634 | 5612 | 4811 | 4289 | 4426 | 4437 | 4348 | 4272 |
| 4825 | Hbo2421 | 3861 | 4601 | 4757 | 4811 | 5621 | 4330 | 4502 | 4463 | 4413 | 4314 |
| 4736 | VNG1472 | 3791 | 4336 | 4322 | 4289 | 4330 | 5673 | 4498 | 4507 | 4505 | 4369 |
| 4975 | NP3998A | 3907 | 4372 | 4467 | 4426 | 4502 | 4498 | 5665 | 4641 | 4703 | 4552 |
| 4984 | Hut0874 | 3900 | 4367 | 4376 | 4437 | 4463 | 4507 | 4641 | 5631 | 4703 | 4609 |
| 4959 | rrnAC0792 | 3888 | 4351 | 4407 | 4348 | 4413 | 4505 | 4703 | 4703 | 5642 | 4795 |
| 4831 | Hmu1777 | 3758 | 4201 | 4226 | 4272 | 4314 | 4369 | 4552 | 4609 | 4795 | 5468 |
765 symbols consensus MKLTVKPLKQKDAGRGLAAIDRAAMDELDLENGDYIVIEG-GD-GRAVARVWPGYPEDDG #oth 13121221122121222122113323123112..21221145211211.....1112.6. VNG6199 :R::::Q::NR:P:S:M:V:::D:LQ:IGVSS::FVA:::RNG:::T::::::SNTS:A: hla0898 :N:::R:::::::::R::::::I:AE::G:SG::I:RV:::P:::A:I:::::::::::: HQ2716A :::::::::::::::::::V::DVAA:::::G::::R::S:::::T:I::::::::D:Q: HVO_2700 :::I::::::::::::::::::::AA:::::G::F:R:D:PN:::T:I::::::::::Q: Hbo2421 :::I::::::::::::::::::::AE::G::G::::R::::DG::T:I::::::::::R: VNG1472 :::::::::::::::::::V::DS::::A::::::V::D:Q::H:::::::::::::::: NP3998A :::::::::::::::::::::::::::::V:::::V:LDS::::S:::::::::::::E: Hut0874 :::::::::::::::::::::::::EQ::::::::V:L:::RE:::::::::::::::T: rrnAC0792 :R::::::::::::::::::::::::::E::::::::L::KQ::S:::::::::::::E: Hmu1777 ------------------------:::M::::::::::D::DG:::::::::::::::S: consensus TGVVRIDGRLRQEADVGIDDRVDVEKADVKPAKSVTVALPQNLRIRGNIGPHIRDKLSGQ #oth 5111.1..1..12.2.1..14151.221152.5611111.11.112.222332.23.211 VNG6199 R:II::::Q:::A:N:S:::::E:::TE:E::DR:::S:::::Q:::DL:S:L:EH:VD: hla0898 ::::::::::::::::::::::T::SV::SR:E:::I:F:SQ::V::Q:S:F:::::::: HQ2716A :::I::::Q:::Q:::::::T:::::::IS:::H:SI::::::::S::::A:L::::::: HVO_2700 ::II::::::::Q:G::::E:::::::::T:::R::I::::::::G::::TY:::::::: Hbo2421 S:::::::::::Q:N:::::::Q::P:::::::T:SI::::::::G::V:TY:::::::: VNG1472 D::::::::::K::::::::Q:T::P::I:::GG::::::::::V::::A:MV::R:N:R NP3998A N::::V::::::::::::::N:HI:P:::N:::E:::::::::::::::::::::::::: Hut0874 D:::::::Q::::::::::::I::::::::::R:IS::::::::V:::::::V:N::::: rrnAC0792 N:I:::::Q:::::N:::::P:NI:::::N::T:::::::::::V:::V::M::NN:::: Hmu1777 KN::::::Q:::::G:::::QIE::::::QV::Q::::::::::V:::V::M::NN:::: consensus AVTQGQTVPFSLGFGPMSS-SGQKIPLKIAETEPSGTVVVTDSTEIQVSEKPAEQI---- #oth 1.24..213412.1.4323523151.31113.3.2...11224.12221241.1224111 VNG6199 ::RA::::A:PI:::MF:GR::RR:::RVVD:Q:::::::QNT:::EIADQS:QEVS::: hla0898 P::E:::IRT:::::L:GG:QS:AV:M:V:S:T::::::I::D:::EI::V:::EL:::: HQ2716A P:::::NIRVPF:::F:::::A:P::M:::S:::::::I::::::VTL:QQ:::D:Q::: HVO_2700 P:A:::S:QLP::::F::A::N:SV:I:::S:D:D:::::::N::F:::Q:::::::::: Hbo2421 P::K::SIQLP::::F:A:::N:SV:V:::S:Q:D::::I:::::V:I:Q::::E::::: VNG1472 P::A:::I:I:F:::G::TI:::Q::V:::::::::::::SND::::L::R:::E:A::: NP3998A :::E::N::::::L::L::K:::R::::::G:::::::::::::::::::::::::AGPS Hut0874 :::T:::::::::L::V::VG:::::::::::D:E::::::EQ:::E::QQ::::::::: rrnAC0792 :::::::::V:F:L::L::M::::::::::::::::::::::::D:::::M::::VH::: Hmu1777 :::::::::V:F:L::L::M:::::::R::::::::::::::Q:D:E::::::::::::: consensus --SGAAEAEGGG--TPDVTYEDIGGLDRELEQVREMIELPMRHPELFQQLGIEPPKGVLL #oth 115243364544223.311.......15...................32...1....... VNG6199 ::VESG:P:NTT::A:AL:::::::::D:::::::::::::::::::GT::::::::::: hla0898 ::T:PS::G:S:D:G::::::::::::N:::::::::::::::::::KR:::D::::::: HQ2716A ::A:ES:SSN--::::A:::::::::E:::::::::::::::::::::R::::::::::: HVO_2700 :::D:SPGDD::::-:S::::::::::K:::::::::::::::::::KR::::::::::: Hbo2421 ::H::EGRDTSE::G:S::::::::::::::::::::::::::::::KR:::D::::::: VNG1472 ::P::G::AET:DP::N::::::::::G::::::::::::::::::::::::D::::::: NP3998A DG::::PG:::-::::S::::::::::S:::::::::::::::::::::::::::::::: Hut0874 ::T:E:PEDAR::::::::::::::::D:::::::::::::::::::N:::::::::::: rrnAC0792 ::::EGAP:ASD:::::::::::::::::::::::::::::::::::::::::::::::: Hmu1777 ::A:D:PT::::EA::::A::::::::S:::::::::::::::::::::::::::::::: consensus HGPPGTGKTLIAKAVANEIDAHFHTISGPEIMSKYYGESEEQLREVFEEAEENAPAIVFI #oth ..........1..........3.31................1..12.11.2.11.1.1.2 VNG6199 :::::::::::::::::::::::Q::::::::::::::::::::D::::::::::::::: hla0898 :::::::::::::::::::::N:::::::::::::::::::K::::::::S:E::::I:M HQ2716A :::::::::::::::::::::S:::::::::::::::::::::::I::::::E::S:::V HVO_2700 :::::::::::::::::::::S:::::::::::::::::::::::I::::T::S:::::: Hbo2421 :::::::::::::::::::::S:::::::::::::::::::::::I::D::::::::::: VNG1472 :::::::::::::::::::::::E:::::::::::::::::K:::::D:::::::::::V NP3998A ::::::::::M::::::::::::TD::::::::::::::::::::::D::S::::::::: Hut0874 ::::::::::M::::::::::Y:T:::::::::::::::::::::M:D:::::::::::: rrnAC0792 ::::::::::M::::::::::Y:T:::::::::::::::::::::::D::S::::::::: Hmu1777 ::::::::::M::::::::::::T:::::::::::::::::::::::::::::::::::: consensus DEIDSIAPKRGETGGDVERRVVAQLLSLMDGLEERGDVIVIGATNRVDAIDPALRRGGRF #oth ..1.......3122..................11..212..11...1.12.1....1... VNG6199 ::L:::::::EDVS::::::::::::::::::::::QLT:::T::::::V::::::P::: hla0898 ::L:::::::E:A:::::::::::::::::::::::E:V::::::::::::::::::::: HQ2716A ::::::::::::A:::::::::::::::::::D:::E:V::::::::::L:::::::::: HVO_2700 ::::::::::S:A:::::::::::::::::::D:::E:V::::::::::::N:::::::: Hbo2421 ::::::::::::A:::::::::::::::::::D:::E:V::::::::::::::::::::: VNG1472 ::L::::::::::Q:::::::::::::::::::D::::T::A:::::::::::::::::: NP3998A :::::::::::::S:::::::::::::::::::::::::::::::::::::::::::::: Hut0874 ::::::::::DD:S::::::::::::::::::::::::::::::::L::L:::::::::: rrnAC0792 :::::::::::::Q::::::::::::::::::::::Q:::::::::::D::::::::::: Hmu1777 :::::::::::::Q::::::::::::::::::D::::::::::::::::::::::::::: consensus DREIEIGVPDKDGRKEILQVHTRGMPLSDGIDLDEYAENTHGFVGADLESLAKESAMNAL #oth .....1....32..1111.1...1..151311116..13.1......113.2..2..11. VNG6199 ::::::::::H:::EK:::I:::::::G::V:::R:::::Q::::::::N:V:::::H:: hla0898 :::::V::::R::::::::::::N:::V:::::::::::::::::::::::::::::H:: HQ2716A :::::V::::RE:::::::::::N:::::SVN:::::D:::::::::I::::::A::::: HVO_2700 ::::::::::R::::::M:::::N:::T:DV:::A::DS::::::::::::::::::H:: Hbo2421 :::::::::::E:::::::::::N::TAE:V:::::::I::::::::I:::::::::::: VNG1472 ::::::::::Q::::::::::::::::VED::::D:::S::::::::I::::::A::::: NP3998A :::::::::::E:::::::::::::::A:::::EQ::::::::::::::::T::A:::S: Hut0874 :::::::::::K::::V::::::::::N::::I:::::R::::::::::Q::::G::::: rrnAC0792 :::::::::::K::::::::::::::::EE:NIEN:::::::::::::AT:T:::::::: Hmu1777 :::::::::::E::::::::::::::::ED:::ES:::::::::::::AQ:T::G::::: consensus RRIRPELDLESDEIDAEVLESLEVTEDDFKEALKGIEPSALREVFVEVPDVTWDDVGGLE #oth ..1..21..131.12112.22241226..14.22111...1.........11.35....2 VNG6199 :::::D:::DEE::P:DI:D:I::::N::::::R::::::::::::::::::::H::::D hla0898 ::::::::::::::::D::N:IQ:::S:::::M::::::::::::::::::S::Q::::: HQ2716A ::::::::::A::V::D:::::S:::T:::D:IR:::::::::::::::::::G:::::T HVO_2700 :::::Q:::DAE::::::::G:K:::::::Q:::S::::::::::::::::::E:::::: Hbo2421 :::::Q:::DE::::TD:::::::R:::::D:M::::::::::::::::::::EN::::: VNG1472 ::V::DI::::::::::L:::ISI::A:::R::N::::::::::::::::T::A:::::T NP3998A ::::::::::Q:::E::::::MT:::S:::D::::VT:::M:::::::::T:::A::::D Hut0874 ::::::I:::A::::::I:::::I::::::A::::::::::::::::::::S:E:::::: rrnAC0792 ::::::::::::::::::::R::ISDK::R::M:::::::::::::::::::::S::::: Hmu1777 :::::DI:::::::::::::::::SKQ:::::::::::::::::::::::TS::S::::: consensus DTKERLRETIQWPLEYPDVFEQMDMQAAKGVLLYGPPGTGKTLLAKAVANEAQSNFISIK #oth 3111..1..1....1123113321222.....1.........11...1...13.....1. VNG6199 :A::::Q::V:::::HA:AY::VALEP:::::::::::::::::::::::::N::::::: hla0898 :::::::::::::::::E:::EL:::::::::M::::::::::::::::::SE::::::: HQ2716A E:::::::::::::D::::::E::I:S:::::M:::::::::M::::::::SE:::::V: HVO_2700 P::::::::::::::::E::Q::::D::::::M:::::::::::::::::::E::::::: Hbo2421 N::::::::::::::::E:Y:K::::S:::::::::::::::::::::::::D:::::V: VNG1472 ::::::::::::::D:::::SE::L:S:::::::::::::::::::::::::N:::::V: NP3998A :::S:::::::::::::E::K::::::::::::::::::::::M:::I:::::::::::: Hut0874 ::T::::::::::::::G:::::::ES:::::::::::::::::::::::::::::::V: rrnAC0792 ::::::::::::::::E::::S::LE::::::M:::::::::::::::::::::::::V: Hmu1777 :::::::::::::::::S::::::L::::::::::::::::::::::::::::::::::: consensus GPELLNKYVGESEKGVREVFSKARENAPTVVFFDEIDSIAGERGRGSGDSGVGERVVSQL #oth ....11.1.....1...11.2...1....1.......1..41..56421.2.2....... VNG6199 ::::F::::::::R:::::::::::::::::::::::A::S:::Q:V:::N::::::::: hla0898 :::::::F:::::::::::::::::::::I::::::::::T:::KN:::::::::::::: HQ2716A :::::D:::::::::::DI:K:::::::::::::::::::T:::GT::::::S::::::: HVO_2700 :::::::F::::::::::::K:::::::::::::::::::T::::D:SS:::T::::::: Hbo2421 ::::::::::::::::::I:K:::::::::::::::::::I:::QS::::::S::::::: VNG1472 ::::::::::::::::::::E:::S::::::::::::A:::Q:::ATS:::::::::::: NP3998A ::::::::::::::::::::E:::S:::::::::::::::::::ERM::::::::::::: Hut0874 :::::::::::::::::::::::::::::::::::::::::::::NM::::::::::::: rrnAC0792 :::::::F::::::::::::::::::::::::::::::::::::G:TT:::::::::::: Hmu1777 :::::::F::::::::::::::::::::::::::::::::A:::S:G:::Q::::::::: consensus LTELDGLEALEDVVVIATTNRPDLIDSALLRPGRLDRHVHVPVPDEDARRAIFEVHTRDK #oth ......1.31.11.11..1.......2..1........11.11.113..22.131..14. VNG6199 ::::::::E:::I:::::::::::::D::::::::::::A:DE:::A:::E:::I::E:: hla0898 ::::::::S:::::::::::::::::::::::::::::::::::::E:::K:L:::::N: HQ2716A ::::::::S:::::I:::::::::::A:::::::::::::::::S:T::E:::::::EE: HVO_2700 ::::::::::::::::::::::::::::::::::::::::::::::::::::LD::::E: Hbo2421 ::::::::S:::::::::S:::::::::::::::::::I:::::::E::H:::::::EH: VNG1472 ::::::I::::::::V::S:::::::D:::::::::::I::::::A::::::LD:::::: NP3998A ::::::::E:::::::::::::::::::::::::::::I:::::::E::E:::A::::N: Hut0874 ::::::::D:::::::::::::::::A::I::::::::I:::::::::::K:L::::::: rrnAC0792 ::::::I:DM:N:::V::::::::::D:::::::::::::::::::E::::::Q:::::: Hmu1777 :::::::::M:::::::::::::::::::I:::::::::::::::::::::::Q::::G: consensus PLADDVDLDELARRTDGYVGADIEAVAREASMAATREFINSVDPEEVGDSVGNVRVTMDH #oth ...12.2216214111.1....2..13...212.2..2132143213531121122235. VNG6199 :::E:::V:::VE:::::::::::::C:::ATV:V::YVRATASA:-SAN:DEIELSIE: hla0898 :::::::::AI::K:E::::::::::T:::::N:S::L:G::SR::::E:::::::::Q: HQ2716A ::::S:S:SR::S::E::::::::::C:::::::S:::::N:S::::KE::::I::::G: HVO_2700 ::::::N::KI:SK::::::::L::L::::::N:S::::R::QK::I:E::::::::::: Hbo2421 :::::::::Q:::K:E::::::::::C:::::::S:::::::E::::EE:I::::::::: VNG1472 :::::::::VV:Q:M::F::::V::LV:::T:N:::::::::::ADAS::::::::::A: NP3998A :::::::IS:::G:::::::::::::C::::::::::::E::S:::AAQ::::::I:AE: Hut0874 :::ES::::D::::::::::::L:::::::A::::::::R:::::D:D::::::LIDES: rrnAC0792 ::::G:::::::S::::::::::::::::::::::::::::::::DI::::S:::::::: Hmu1777 ::::G::::Q:::::E::::::::::::::::::::::::::::DDID:::S:::I:::: consensus FEDALDEVGPSVTEETRERYEEIEQRFDKSEVERD-EEEVGRTFQ #oth ..5..3.1421136112231222123.544344453356423213 VNG6199 ::Q::E::DSNAGS::--------:A:E:PAEAV-:--------- hla0898 ::::::::N::::P::::::::::KQ:RR:::N:E::T:P:TA:: HQ2716A :::::::::::::Q::::Q::Q:::::ET:N:::QP:AG:::::: HVO_2700 :::::::I:A:::DDV:R::::::E::Q:::::::R:T::::::: Hbo2421 ::A:::::N::::Q:::R::::::E::Q::D::::P::K:::::: VNG1472 ::A::G::TA::DADVK:N::::::::NTADTPT:D:PAS:-A:R NP3998A ::E:::::::::S:D:::::::V:EE:TPG:EPSG:KSD:::::H Hut0874 ::T::G::Q:::DR:V:::::::::::::R:T:L:::P:::K::: rrnAC0792 ::H::S::::::::::::::D:::::::RA:PGVTD:STAS:::: Hmu1777 ::Q:::::::::D:DV::::D:::E:::HA:A:L:DG:TAS::::