|
Pairwise sequence scores | |||||||||
---|---|---|---|---|---|---|---|---|---|
Consensus score | 2685 | hla1602 | Hut2089 | Hbo2060 | NP2510A | HVO_2364 | VNG1899 | rrnAC3392 | Hmu2204 |
1848 | hla1602 | 3938 | 1318 | 1515 | 1253 | 1610 | 1140 | 1446 | 1478 |
1882 | Hut2089 | 1318 | 3060 | 1479 | 1362 | 1445 | 1170 | 1727 | 1781 |
1836 | Hbo2060 | 1515 | 1479 | 3189 | 1418 | 1608 | 1227 | 1498 | 1475 |
1591 | NP2510A | 1253 | 1362 | 1418 | 2330 | 1387 | 1187 | 1472 | 1427 |
1916 | HVO_2364 | 1610 | 1445 | 1608 | 1387 | 3015 | 1223 | 1547 | 1501 |
1331 | VNG1899 | 1140 | 1170 | 1227 | 1187 | 1223 | 1604 | 1199 | 1233 |
2087 | rrnAC3392 | 1446 | 1727 | 1498 | 1472 | 1547 | 1199 | 2952 | 1908 |
2017 | Hmu2204 | 1478 | 1781 | 1475 | 1427 | 1501 | 1233 | 1908 | 2627 |
532 symbols consensus -----------------------------------------DESDDDWFERALDDSD--- #oth 111111111111111111111111112222122222234345322211113254343232 hla1602 MRHRFSSPDKRMRTSGRGSGKFQAVPPPCQNYADPSRPTGTMSDE::::::::R:::ADS Hut2089 ::::::::::::::::::::::::::::::::::::::MSD::::E::::Q:ISGDRDVD Hbo2060 :::::::::::::::::::::::::::::::::::::::::-M:::::::::F::EPDSD NP2510A ::::::::::::::::::::::::::MEAVNCRYARAERGWTM:::::::QDTE::P::: HVO_2364 :::::::::::::::::::::::::::::::::::::::::VSD:::::::::RET:::: VNG1899 :::::::::::::::::::::::::::::::::::::::::----------------::: rrnAC3392 :::::::::::::::::::::::::::::::::::::MSED:::::::::S::::E-::: Hmu2204 ::::::::::::::::::::::::::::::::::::::::MS:D::::::S:V:E::D:: consensus -------------------DGESEATDED------------EPFDDGTDDD--D--G--- #oth 111111111111222122222435454322332434234544453523434443432344 hla1602 ::::::::::::DAAEGDE:D:TGESN::DETANGDEPPAR:AS:P:GG::RA:ER:SDP Hut2089 :::::::::::::::::::::LPTR::::::::SPTEETPDDW:EGDEEHSTE:DRDTPE Hbo2060 SDDESGAASDHVERSESASE:G:A:ET:TTPESDSVAETDDA:P::::T::AVQRD:TPA NP2510A :::::::::::::::::::----------::::::::::::----------::-::-::: HVO_2364 ::::::::::::::::::::::TD:D:A:::::::::PEES:QR:::ET:VGDADS:SAA VNG1899 :::::::::::::::::::----------::::::::::::----------::-::-::: rrnAC3392 :::::::::::::::::::::D::P:EA:DISATPSESDTE::AST:::SFGA:SDDGKR Hmu2204 ::::::::::::::::::::::::PA:S:::::::::::::S::EAD::S:::-::-::: consensus --D-SPSE-DGDADFGTDSDDSPFADD------------------GDAAFGGES----D- #oth 443554336244535454436445544111111111111111111556343233443334 hla1602 FGGIRNG:R:PSREA:D:V:EDN::G:VFGSTESESDSPKSDLPE::DP:::::FGGD:P Hut2089 AQTVD::DETDAF:QS:T:ST:AE:EA::::::::::::::::::ET:TP::::ETATRD Hbo2060 FK:GAS::T:P:TAETPTA:A:ASR::::::::::::::::::::AER:::FDAGDATPE NP2510A ::-:----:----------::G:ST::::::::::::::::::::FES::D::-::::-: HVO_2364 ES:APD:SVT:G:E:::E:EGADA::E::::::::::::::::::R:EPLSFGDGPFG:S VNG1899 ::-:----:------------------::::::::::::::::::---------::::-: rrnAC3392 SG:S::FDD::S:::TEG::S:::G:::::::::::::::::::::S::S::D:SPFD:S Hmu2204 ::-:::F:A:T:S:SPF:R::::DEAV:::::::::::::::::::NGP:D:G-::::-: consensus -G---------TGEDDPFGDD-------------G-GDGGGLFDDD--FASAFASAGGPG #oth 422111111235346314454545544431333133333243232111145254433443 hla1602 F:G::::::GSF::E:::::ESANDGTPDPTGS::G:F:::::G::DP:DGGS:GS:SA: Hut2089 GE:::::::::::TVA:D:EPETAITEEAPDFE:AADS::S:::E::::G::LE:::::: Hbo2060 AE::::::::::SDP::::GVRSRVDQSS:::::TDR:EPNP:SE:::::D:MG::PAF: NP2510A :-:::::::::I:G:G:ST:::::::::::::::-:----------:::E:::DAGS:GS HVO_2364 T:DDSRDDDPLD:D::::ST:FATAFNNAPMPDA:G:F::DSS::::::GFGP:PGS::E VNG1899 :-:::::::::----------:::::::::::::-:----------::------------ rrnAC3392 G:D::::::PFSS:SG:ADA:AGSP::::::::::D::::::::::::::T::E:::SG: Hmu2204 :-::::::::::D:AG::DE::::::::::::::-:-:D:S::::::::E:::::::D:: consensus G--------------------------------------DDGEG--------FDDEEFES #oth 211111111111111111111111111111111111112333542323233333323121 hla1602 :GSAGSKSTDSGSADPFGGYRGNAAGDSSGPNDVGFGEF:G:::GGASPGFDV:PD:::: Hut2089 :::::::::::::::::::::::::::::::::::::::::AG:GSDPSETE:::DS::: Hbo2060 :::::::::::::::::::::::::::::::::::::ESEG:QNPPDTSTES:::::::: NP2510A E::::::::::::::::::::::::::::::::::::::-----::::::::EF::::D: HVO_2364 :::::::::::::::::::::::::::::::::::::::S:SPT::::::::::::::D: VNG1899 -::::::::::::::::::::::::::::::::::::::-----::::::::-------- rrnAC3392 ::::::::::::::::::::::::::::::::::::::::S:SD::::::::-FE::::: Hmu2204 -::::::::::::::::::::::::::::::::::::::::S:::::::::::E:DD::: consensus DIPRIDIGIEGLDEMIQGGVPERSLMVTIGSAGTGKTTFGLQFLHHALENGENAVFITLE #oth 31314121131114.11..1.4.1.2122.31.......1....2211331331.11... hla1602 S:E:T:::::::::::L::::R:::LSV::G::::::::A::::NE:::SDRKG:Y:::: Hut2089 E:::::L::::::::::::::S:H:::V:::P::::::::::::::G:QQ:::::::::: Hbo2060 ::D:L:::::::::::L::::K::::::::T:::::::::::::N:::::::K::Y:::: NP2510A ::::::L::N:::N:::::::::::::VM:::::::::::::::NEGI::::RG:Y:::: HVO_2364 ::D::::::::::D::L::::K:::::A::::::::::::::::RK:::D:GSG:Y:::: VNG1899 --------------:V:::::::::L:AV:E::::::::::::::E::S:::R::::::: rrnAC3392 ::::V::::::::Q:::::I:Q:H:I::::::::::::::::::::G:R:::::::L::: Hmu2204 E:::::L::D:::Q:::::I:::H:I::::::::::::::::::::G:QQ:D:::::::: consensus QSREAILDTADEKGWEFREYEEEGRLAIVDLDPVEMANSLASIRNDLPRLIEEFGADRLV #oth 112221342.311..4.34123523..1111..1......41.111112.133.1.2... hla1602 :T::S::S::E::::S:::HA:AD:::V:AI::I:::::::::::::T:::A::D::::: Hut2089 ::::S:::::::R::::DR::R:D::::::::::::::::EN::GEF:Q:VR:::::::: Hbo2060 E::DR:F:::E::::P::K:AD:D::::I::::::::::::::Q::::::VAD:::E::: NP2510A ETKD:VRRA:T::::P:D::MA:NK::V:::::I::::::T:::G::::::DA:::E::: HVO_2364 E:::R::::::::::::ST::AD::::V::::::::::::S:::::::::V::::::::: VNG1899 E::GRVIQS::::::A:S:HADR:N::V::I::I::::::T::::E::::V:::::S::: rrnAC3392 ::HD::::::GDR::G:E::::Q:Q:::::::::::::::DN::GE::A:::K:D::::: Hmu2204 ::::::IA::E:R::::EH:::T:Q:::::::::::::::DN::GE::A:::::D::::: consensus LDSVSLLEMMYDDQSKRRTEVFDFTRSLKEAGVTTMLTSEASEDNPYASRHGIIEYLTDA #oth ............2113..11112.121..4..11.121..13242113.11.21...2.. hla1602 ::::::::::::HPA:::S:::G::::::::::::L:::::N:K:::::::::V:::::: Hut2089 ::::::::::::::AR::::::::::::::::::::F::::N:::::::::::::::::: Hbo2060 ::::::::::::HP::::SQ::::A:A::D:::::L:::::K:N:::S::::LV:::A:: NP2510A ::::::::::::E::A:::::::::KA::S::IS::V:::V:DTDS:T:KY::::::::: HVO_2364 ::::::::::::HP::::S:::N::::::D:::::::::::DQST::V:::::V:::S:: VNG1899 :::::::::::::::T::::IY:::TA:::::::::::::::::::F:::Y:V::::::: rrnAC3392 :::::::::::::::R:::::::::::::Q:::::::V:::::T::F::::::::::::: Hmu2204 ::::::::::::::A::::::::::::::N:::::::::::::::::::::::::::::: consensus VFVLQYVRGDDFRETRLAVEIQKIRNANHSRETKPYEITNDGISVYQQANIF #oth .11.1.1.33213.1...1......1.....21...21.52..1..2..1.. hla1602 ::::::I::T::::M::::::::::D:::::QS::::::DT:::::G::::: Hut2089 ::::::::::T-Q::::::::::::::::::A::::A::L:::D:::::S:: Hbo2060 ::::::::PS::::::::I::::::D::::::::::DL:S::::::R::::: NP2510A ::::::::S:-:K::::::::::::::::::::::::::S:::::::::S:: HVO_2364 ::::::::::::::::::I::::::D:::::::::::L::E::::::::::: VNG1899 :V::R:I:PE:::::::::::::::D:::::::::::::HE:::::R::::: rrnAC3392 ::I:::::S:T-S::::::::::::::::::::::::::::::::::::::: Hmu2204 ::::::::TET-:::::::::::::::::::::::::::ME:::::::::::