| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 3201 | Hmu0913 | Hut0327 | hla1336 | HQ2285A | Hbo1006 | NP0530A | VNG0188 | HVO_A0606 | rrnAC1760 | Hmu1981 |
| 864 | Hmu0913 | 2969 | 700 | 759 | 722 | 692 | 643 | 685 | 766 | 664 | 671 |
| 2483 | Hut0327 | 700 | 3386 | 2555 | 2519 | 2099 | 2023 | 2073 | 2147 | 2123 | 2193 |
| 2511 | hla1336 | 759 | 2555 | 3398 | 2769 | 2094 | 2013 | 2081 | 2110 | 2098 | 2175 |
| 2489 | HQ2285A | 722 | 2519 | 2769 | 3455 | 2084 | 2002 | 2075 | 2130 | 2100 | 2137 |
| 2472 | Hbo1006 | 692 | 2099 | 2094 | 2084 | 3258 | 2390 | 2151 | 2123 | 2169 | 2208 |
| 2288 | NP0530A | 643 | 2023 | 2013 | 2002 | 2390 | 3266 | 1955 | 2054 | 2022 | 2156 |
| 2466 | VNG0188 | 685 | 2073 | 2081 | 2075 | 2151 | 1955 | 3393 | 2370 | 2367 | 2362 |
| 2623 | HVO_A0606 | 766 | 2147 | 2110 | 2130 | 2123 | 2054 | 2370 | 3227 | 2441 | 2474 |
| 2588 | rrnAC1760 | 664 | 2123 | 2098 | 2100 | 2169 | 2022 | 2367 | 2441 | 3317 | 2546 |
| 2615 | Hmu1981 | 671 | 2193 | 2175 | 2137 | 2208 | 2156 | 2362 | 2474 | 2546 | 3394 |
529 symbols consensus --------------MPTAESDDVDPLDTFRQFFALER--------DVLVLSLAMFAFSLG #oth 111111111112445866653553444331213213211111111.1112131122.112 Hmu0913 :::::::::::MDDP:V:::ERHR:-E:DQ::EIVDGVRVDRTLT:LFAAVASVAT:DGA Hut0327 ::::::::::::::::AEQAEAAG:I:A::S::::R:::::::::::::::I:::::::: hla1336 ::::::::::MSKDQAI:DPEETG::E::::::::::::::::::::::V::S::::::: HQ2285A MQYRRYNNSLMSQEQI:I:::ESG:::::::L:::Q::::::::::::::::S::::::: Hbo1006 :::::::::::::::GHG:T::P:A:S::::::::DG::::::::::::::VS::::::: NP0530A ::::::::::::::---MG:GPTGLRG:G::LL::::::::::::::::::V:::::::: VNG0188 :::::::::::::MSDDTTT:G::A::SY::::::QP::::::::::::::A::LV:::A HVO_A0606 :::::::::::::::N:RRDAA::SF:S::::IG:::::::::::::::::V:::::::S rrnAC1760 ::::::::::::MATE:GVDE:::L::S::::::::::::::::::::::::S:L::::A Hmu1981 :::::::::::::::TAETG::ASV:AP::R:::::::::::::::::::::::L::::A consensus FQMTSRYLPEYMSVLGAGGFVIGLYGSFGNLISAVYPYPGGAISDRIGSRLALTLFGLLS #oth 11114.13.1.2631.112421.11.22113.2.22111111311.311.3211211442 Hmu0913 LYVVV:F::::L::R:V:PVA::AF:T:WLA:T:--------LDR:DTG::PVLVA:--A Hut0327 ::::::::::::TA:::S:::V::::T:::V::::F::::::::::::::Y::::::F:: hla1336 ::::::F:::::VA:::S:::V::F:T:::V:::::::::::::::::::Y:::A:::V: HQ2285A ::::N:F::::IIA:::S:::V::F:TV::I::::F::::::::::::::Y:::::::V: Hbo1006 ::::G::M:R:::::::::VA:::::::::::::::::::::F:::V:::V:::A::FA: NP0530A :::::::I:R::::::::AVA:::F:A:::::::L:::::::V:::::::T::::::::: VNG0188 ::::T::V:::IYT:::::AIV:::::L::::::::::::::L:::V:::V:::A:AVVT HVO_A0606 ::::G::V:::LR:::::AT:V:::::V::::G:L:::::::L:::L::::S:::::T:: rrnAC1760 :::::::I::::RI:::SAG:::::::V::::::::::::::V:::::::::::A:AT:A Hmu1981 :::::::V:::LN::::SAG:::::::V::::::::::::::V::::::::::::::TIA consensus TAGFLVWLVAPAVG---------------AVTVGGVTIEPWLW---IFVGLFLAQAWKSF #oth 13.134.34.363343322434322212174222355352242212312.131111.111 Hmu0913 :::V:A:::::T:TDSTLALWV::::::::::A::LGPAA:Y:S:RTAI:VP::D::--- Hut0327 :L::A:::::GQFD::::::::::::::::I::A:::::::V:::::::::V:::::::: hla1336 :V::V:::I::N:::::::::::::::::::::A:::::::I:::::::::V:::::::: HQ2285A :F::G::::::NL::::::::::::::::VI::ADI::Q::I:::::::::L:::G:::: Hbo1006 :V:::I::F:D:F:VLTVP::::::::::GF:::PL::DSV:LPVG:::::LF::::::: NP0530A :::::I::F:D:F:TVVVPPVGTEREVFGREV:I:W-L::AVVPVG::L::VF::::::: VNG0188 :::::::AA::SLPGVVVPEIAL:::::GPLDL::WAVGA::::::V::::::T:::::: HVO_A0606 S::::F:F:::Q:P:::::::::::::::E::LA::SL:::::::::::::::T:::::: rrnAC1760 :V::GI:YL:SVI::::::::::::::::D::L:AT:LPA:TL:::V::::::::::::: Hmu1981 :V:::L:Y:::F:PTVSVPVVEFALPVAGT::L::-RL::::::::L::::::T:::::: consensus GLGATFAIVKQSVPPSRLAMGFASTETFRRTA---FLLGPLLAAALLAVT---------- #oth 1111211211122415311411111141..31111222..24113224451111111111 Hmu0913 -------------::ASRS--------T::PGGPVWV::::VLSIIVL:L:::::::::: Hut0327 ::::S::V:::ATD:::::A::::::::::V::::::V::V:::V::ELQWNVSLLSPIL hla1336 :::::::V:::ATD:::::A:::::::::::::::L:I::V:::I:IDLH:::::::::: HQ2285A :::::::V::::TD:::::T:::::::::::::::::I::V:::V:IGFH:::::::::: Hbo1006 :::::::::::::::G:::T::::::::::::::::FI:::F::GV:::F:::::::::: NP0530A :::::::::::::S:DQ::T::::::::::::::::::::::::GI:::F:::::::::: VNG0188 :::::::::::ATE::::::::::::I:::VG::::::::AI:::V::A::::::::::: HVO_A0606 :::::::::::::::E::::::::::I:::IG:::::::::I::::::A::::::::::: rrnAC1760 :::::::::::::::Q::::::::::M:::IG:::::::::A::::::T::::::::::: Hmu1981 :::::::V:::::AREH::V::::::V:::IG::::::::::::G::::A:::::::::: consensus ----A-FVVGFRYVLAVAAAFGAVATVAQHVLYDASEDTLGKS-FEGISQIRADLREMPA #oth 111244.542.141.3123321421.23125.11123123132114.35533411132.5 Hmu0913 :::S:S:SA:::I:::LTV:L:--G:AGALW:------S:DDT:--:SQPSSRRV:TV:H Hut0327 GRMGDS:ATN:Q:::L:GVV:::LG:LI::W::::::::I:G:::A::E::::::::::: hla1336 ::::PA:T:S::::::::VV::V:G:LV::::::::G:AV:GGR:::V:R::T::::::D HQ2285A ::::PA:S:S:::::S::IL::I:G:::::I:::::::SM:D:::N::K:::R::::::D Hbo1006 :::::::ET:::VI:::::::A::::::::::::::::SI:::::G:::TVLS:::S::P NP0530A ::::T::E::::I:::::::::L:::L:::F::::::::::::::A:V:AVVD:::S::S VNG0188 ::::E::Q:::::::LL::G:A:::::::QY::::::::V:D:::::LDT:::::AA::E HVO_A0606 :::::T::E::::::I::::::I:::::::L::::G::S::R:::::LA:L:D:::SL:E rrnAC1760 :::::T::D::QR::L::L:C:L:::::::F:::::::::::::::::D::L::::T::: Hmu1981 :::::G::T::QWI:L::V:::::::::::::::::D::V:::::::V:GVLD:::A::: consensus TLRPLLVADTLVRFANGMVYVFFVIVVTEFLEVGFT--------GFGV-SLSPDAFFGVL #oth 41111121.1121111.2.1..112.113324.12532333313442214.213.2..3. Hmu0913 ------LG:S:LEV:M:V:S::V:L:::RV:D:ELA::::::::VL:I:Q:GSA:T::L: Hut0327 E::::::G::::::::::::::::L:::Q::::::DASFGFLGSTYA::T:::A::::I: hla1336 P:::::IG::::::::::::::::L:::RIFS::LERTVAVGGISYA::D:::Q::::Y: HQ2285A P::::::G::::::::::::::::L:I:Q:Y::::NPTASLAGFSY:::::::E::::Y: Hbo1006 A::::::G:::::::::::::::::::V::::::V:::::::::LPV:G::::::::::: NP0530A E:::::::::::::G::::::::I::::::::::VS::::::::LPV:GR:::::Y:::: VNG0188 ::::::I::::I:::::L::::::V:::RY:G:::::::::::::::::::::E:::::: HVO_A0606 :::::::::::I:::::::::::::::::::::::::::::::::::::::R:::::::: rrnAC1760 ::::::::::F::::::::::::::::::::S:::::::::::::::L:Q:R:::::::: Hmu1981 ::::::::::::::::::::::::::::D::A:::D::::::::VA:::::R:::::::: consensus LGVEMVVALLTMAPVAKLAERVGLKPVVALGFAVYAVFPLLLIFAP-------ADQWVLV #oth .21.122122424122123334.11.3123.13.114..31.142.21121224543123 Hmu0913 :L::I:AGA:ARTAGPR:VGSI:SR:LLVY:SL:V:A:::V:VSV::::::::PTPLAVG Hut0327 :::::L::::V:::A::A::Y:::::::::::::::I::VV::Y::::::::::TETAMI hla1336 :::::::::I::V:A:::::::::::I:::::F::G::::V:V:G:DLLSPFVSI::A:: HQ2285A :::::LI::IA:::A::I::::::::I:::::::::L::IV::GG:ELLAPVMPLS:AMI Hbo1006 :A:::A:::V::V:::::SQ:F:::::::::::::::::V:::N:::::::::DSAL::A NP0530A :AI::L::::I:L::SR:SR:::::::::V::::::I::AV::Y:::::::::DNAA::A VNG0188 :A::::::I::KV::S:::::T::::I:G:::L::::::V:::N:::::::::::::::: HVO_A0606 :::::::::::KL::S:::::T::::::::::S:::M::V::::::::::::::::::V: rrnAC1760 ::::::::I:S:::::::T:WA::::A:::::L::::::::::::::::::::GN::::: Hmu1981 ::::::::::S:I::S:::::::::::::I:::::::::::::::::::::::::::::: consensus LLFAFSGLRFAGLPAHKALIVGPAEQDAGGRVTGTYYLLRNTIVIPSAALGGWLYAFD-- #oth 32..21.1.111112111111.1.2533.1122121112.1121111122..41246312 Hmu0913 G:::IY:T:S---------LA:V:RRAG:AICRPASDRR:TVV:AAGPL:::V:F:V::: Hut0327 AV::::::::::::S::::::::::A:::::::::::::::::::::::I::Y:WDYV:: hla1336 :V::::::::::::S:::::::::::G::::::::::::::::::::::I::Y:WD:V:: HQ2285A :I::::::::::::S:::::::::KKG:::::::::::::::V:::::::::Y:WE:V:: Hbo1006 V::::::::::::::::::::::::EN:::::V:S:::V::VVT::::VV:::::SN::: NP0530A ::::V::::::::::::::::::::SGS::::::S:::V::VV::::::I::AI::VS:: VNG0188 A::::::::::::::::::::::::::::::I::::::V::::::::::V::L::GG:WA HVO_A0606 A::::::::::::::::::::::::RN:::::::A:::::::::::::::::::::R::: rrnAC1760 ::::::::::::::::::::::::::::::::::::::::::L::::::::::::GSEWA Hmu1981 :::::::::::::::::::::::::::T::::::::::::::L::::::::::::GS:WT consensus -------------PELAFTVATAIGLVGVGYFL---VFGREFEAYA--- #oth 2332111322312.331.44.222.33.2431211122.2113125312 Hmu0913 ::::::::::::::V:::GS:::::A:::WELARTH:T:AGWRDR-::: Hut0327 ::::::::::::S::V:::L:A:V:V::T::::::::::E:::::R::: hla1336 ::::::::::::S::V:::::AV::VA:T::::::::::E::::::RGR HQ2285A ::::::::::::S::I:::I:AV::V::TS:::::::::::::::L::: Hbo1006 ::::::::::::::KT::LL:::V::I:T:::::::::::::::::::: NP0530A :::::::::::::::T::LT::::::A:LVV:::::A:::::::AVAG: VNG0188 VPVPLLDAVLVAG:::S::L::VT::L::A::A:::::::::D:::::: HVO_A0606 ::::::::::::::T:::S::SLV:A:::V::A:::LR:E::A:::GGA rrnAC1760 VAIG::DVVIQAG:::::G:::VV::I::V::I::::::::::::E::: Hmu1981 ASTGL::GAITAG:::::A::S:::I:::AA:::::A::::::::::::