|
Pairwise sequence scores | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2360 | Hut3000 | HQ1455A | VNG0158 | rrnAC0545 | Hmu1351 | hla0075 | hla2114 | HVO_A0328 | HVO_0549 | Hbo0980 | Hut0688 | Hmu0278 | rrnAC2551 |
1398 | Hut3000 | 2383 | 1147 | 1139 | 1266 | 1218 | 1178 | 1155 | 1238 | 1193 | 1172 | 760 | 772 | 728 |
1415 | HQ1455A | 1147 | 2583 | 1181 | 1246 | 1201 | 1099 | 1126 | 1214 | 1256 | 1376 | 752 | 830 | 794 |
1588 | VNG0158 | 1139 | 1181 | 2366 | 1382 | 1293 | 1331 | 1317 | 1346 | 1308 | 1275 | 737 | 895 | 855 |
1703 | rrnAC0545 | 1266 | 1246 | 1382 | 2364 | 1710 | 1370 | 1395 | 1442 | 1412 | 1412 | 823 | 928 | 886 |
1679 | Hmu1351 | 1218 | 1201 | 1293 | 1710 | 2335 | 1371 | 1364 | 1438 | 1347 | 1423 | 895 | 904 | 918 |
1778 | hla0075 | 1178 | 1099 | 1331 | 1370 | 1371 | 2978 | 1914 | 1357 | 1500 | 1555 | 906 | 923 | 964 |
1757 | hla2114 | 1155 | 1126 | 1317 | 1395 | 1364 | 1914 | 2398 | 1399 | 1446 | 1540 | 869 | 929 | 944 |
1680 | HVO_A0328 | 1238 | 1214 | 1346 | 1442 | 1438 | 1357 | 1399 | 2368 | 1450 | 1490 | 795 | 1024 | 965 |
1673 | HVO_0549 | 1193 | 1256 | 1308 | 1412 | 1347 | 1500 | 1446 | 1450 | 2366 | 1618 | 883 | 958 | 935 |
1774 | Hbo0980 | 1172 | 1376 | 1275 | 1412 | 1423 | 1555 | 1540 | 1490 | 1618 | 2369 | 884 | 950 | 959 |
1085 | Hut0688 | 760 | 752 | 737 | 823 | 895 | 906 | 869 | 795 | 883 | 884 | 2319 | 1029 | 1064 |
1172 | Hmu0278 | 772 | 830 | 895 | 928 | 904 | 923 | 929 | 1024 | 958 | 950 | 1029 | 2386 | 1194 |
1196 | rrnAC2551 | 728 | 794 | 855 | 886 | 918 | 964 | 944 | 965 | 935 | 959 | 1064 | 1194 | 2335 |
404 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111112122222222 Hut3000 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ1455A ::::::::::::::::::::::::::::::::::::::::::::::::::MSESNMGKTA VNG0158 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0545 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1351 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0075 LPRSRCSCSGRWRWRRRCGERQRCDERHPAADRGSFCIPSPTLRYAHRSDRSDRSDCGDR hla2114 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_A0328 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0549 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0980 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0688 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0278 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC2551 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------MTDLVTFGETMLRLSPPRGERLETARTLDVRAGGAESNVAVAAARLGA #oth 2222222221335542112..141.111.5541324255553323.11111.23142..6 Hut3000 ::::::::::MTPPR:IA:::SL:::AT:TA:PI::TD::::HV::::G::::::Q:::L HQ1455A DVDSSADASVDTAL:I::I::::::::::P:V:ITQ:NEF::HV::::::::AV:SQ::C VNG0158 ::::::::::::-M:V:::::::::::::GH::V:A:DRM:::VA::::::::T:G:::: rrnAC0545 ::::::::::::::E::::::::::::::GD::::::DQYA:::A::::::::::Q:::V Hmu1351 :::::::::::::::::::::::::::::GD::I:::DQYV:::A:::::::::TQ:::L hla0075 IDRAHRAGRVVGV:::::::::::::::::::::::TE::::Q::::::::::G:::::: hla2114 ::::::::::::::E:::::::::::::::::::::TSD:A:Q::::::::::G:::::T HVO_A0328 :::::::::::MTAE::::::::I:::::E:::I::::S:EF:TA::::::::::S:::C HVO_0549 ::::::::::::::A:::::::::::::::::::::::E:E:Q::::::::::::::::R Hbo0980 :::::::::::::::I:::::::::::::::D:::RT:::::Q::::::::::::S:::S Hut0688 :::::::::::::PS:I:V:::P::::::GNR:FVGSE:VQLT:T:T:::::I:::A::: Hmu0278 :::::::::::::SR:::::::S::::::DH::::::TDVSLH:D:T::ST::::T:::: rrnAC2551 ::::::::::::-MS:::::::A::F:::DVQ:F::::EASI:VD:TA:S::AT:G:::: consensus DAAWLSKLPDSPLGRRVTAELRSH--GVETD-VVWDD-DDGRQGTYYLEQGGPPRGTNVI #oth 526.4..1.3121.21134215531122535115.324444.3.331516164..45534 Hut3000 ::T:V::::AT:V:EK::TAY:T:::D:DPA:::::ES::A:L::::::A:AA:::SQ:: HQ1455A QTG:I::::A::::::I:TA:Q:Y::D::L::II::HD::::V::::F:P::K:::DT:Q VNG0158 ET:::::::A:::::K:A:T::AQ:::TTPE::T:T:R::L:::L:F:::::E::::T:H rrnAC0545 ::M:A:::::::V:::::G::KH:::::SV:::A:::S:SA::::::::::S::::ND:: Hmu1351 ::T:V:::::::V:::::G::A::::::::::I::S::-E:::::::::S:ES:::N::: hla0075 ::V::::::E::::::IIG:::::::::R:G::S:A:PEAS:L::::::H::E::::::: hla2114 :VC:::::::::::::IVN::Q::::::QPG:IA:T:P:AS:L::::::H::S::::::: HVO_A0328 S:::::::::::::::::T:::T::::::PY::R::::-:A:::A::I:::RA::P:::: HVO_0549 ::::F:::::::::::IVS:::::::S:D::G:::T:DA:A:::V::::H:AS::P:::V Hbo0980 N:V::::::::::::::IS::Q:::::::::::A:::SGET:M::::::P::S::::::: Hut0688 ::T:A::::STQ::K::VS:::EY:::::::::A:TE:-S::V:LEFRQP:V:::EPVI: Hmu0278 P:V:::::::TV:::::V:::EQQGD:LQ:Q:::::E:-:::::LQFV:R:S:::DDVTV rrnAC2551 ::Q::::V::T::::::V:::HEF:::L::E::::A:P:T::::LTFH:DAD:::AERLL consensus YDRADAAVTTATPDELPTDAVEAADVFHTSGITPALSETLAETTAALLRAAQDAGTTTAF #oth 2..42224214433134547356.453212.2121..22156.15321452544223431 Hut3000 ::::GSSI::::FE::::APFTE::AV:V::::::::A::V:::SEI:ST:K:S:A::V: HQ1455A ::::GSS:::L:TA:ISLEMIKS:SICYV:::::::::::QT:VETV:QI::S:::K::: VNG0158 :::Q::::::::A:::APAF::R:GYL::::::::::::::A:::D::EL::ET:::ATL rrnAC0545 :::QN:S::::::A::::E:IAD:AG::::::::::::::ES:::D::SL::::::::S: Hmu1351 :::::::::::::::::V:RIRS:SA:::T::::::::::EV::QT::E::A::::L:S: hla0075 :::::::I::V::A::::G:L:::EY:::T::::::::RA::::T::::::G:::A:RS: hla2114 :::::::I::VK::::::N:::K:EW:::T::::::::AA::::T:::QR:G:::::RS: HVO_A0328 :::::::::::R::::AV:I::D:AA:Y::::::::::::R:::GE::QT:TE::::::: HVO_0549 ::::::::::LETG:FDL:::RD:E:CF::::::::::::S::::DV:DE::N::::::: Hbo0980 :::S::::::T::G:::Q:::R:::::Y:::::::::A:::::::T::ET::E::::::: Hut0688 H::DG:TAGSM::ADI:M:D:::::GVFVA:SSA:::::A:::V::V:::SGSDNGLSV: Hmu0278 Q::G:T:LA:VST:DVRMAM:QN::::FV::S:::::P:ARR::E::Y::CE---G:CV: rrnAC2551 Q::G:T:MA:L::G:::MGEIQN:::VF:::A:LS::::A:D::G::::::A---GMR:: consensus DLNYRSKLWDPEDAREALEDLLPHVDVLFVAERDARTVLDRTGDAEEIARGLASEFDFET #oth 1121243..4455.34325512251.3.22333135611244131553134215433235 Hut3000 :V::::N:::::S:::T:T::::D:::::::H:::E::::YD::::TV:AD:HADY:LDL HQ1455A :::::::::NTTM:KN:YQS:::D::I:IG::::VN:C:::SA:P:S:V:D:::T:NL:: VNG0158 :V:::RG::SH:E::DT::A:F:D::::::::::::G::::::::DA::::::D::A:G: rrnAC0545 :::::::::T:AE::SV:TE:F:S::L:V::::::NV:::::::::T:::D::A:YG::A Hmu1351 :V:::::::E::V:::T:TE:F::::::I::Q:::EN::G:::E:AS:::E::E:::::V hla0075 :::::A::::::T::A:Y:::FE:::T:::PR::::E::::E:::V:::H::::A::::: hla2114 :::::::::::QT::A:Y:::FE:I:T:::PR::::K::::E:::V:::H:::T::A:D: HVO_A0328 :::::::::S:S:::D:C:S:F:K::::VA::::I:A::ELD:::PTL:SE::GD::::: HVO_0549 :::::T:::S:DE:A:VYR:::DS::L::A:::::A:::G:D::::SV:::::DDY:I:: Hbo0980 :::::::::T:AE:KAGY:T:::N::::IG::::IE:C:GKR:EPADV::E::D:Y:::: Hut0688 E:D::PR:::A:::::T:TPM:E:::::IAN:NQL:::FG::::PR:A:H:V::KW:IDL Hmu0278 ::D:Q:G::SLS::::::LS:QDAI:::VAD:D::QA:F::S:K:RQL:HSI:::G:::Q rrnAC2551 ::GFHPG:::A:::LD::A::::A::T::A::EQVSA:F:T::SPR:VVHT::T:Y:LTR consensus VVVTRGEEGALALHDGTVHEQPVFEAETVDAIGTGDAFVGGFLAQRLAGG-------DVE #oth 223.2147121164256462133312445123.1122.3112244546131111111554 Hut3000 ::::T::A::::FDGERSAH:::::T::::::::::::::::::AW:TDE:::::::SIP HQ1455A :IL:::KN:VV::SND::F::::YD:K:I::V:::::::::::T:K:ND:HNGTTCSSI: VNG0158 ::L::::A::::VRNA:TVT:::::T::H:P::::::::::Y::A:VD:::::::::::: rrnAC0545 T:I:::SD:::::A::::T:::T::STDAHPV::::S::::::S:Y:S:::::::::T:A Hmu1351 TIL:::S:P:::VA:::T::::T:::TSAHPV::::S::::::S:YV::E:::::::S:: hla0075 ::::::T:::V::RN:E:Y::G::::D:Y::::::::::A:Y::K:ID:::::::::EMA hla2114 ::::::L:::V:::::SMY::D::::D:F:::::::::::::I:E::R::::::::::LP HVO_A0328 :::::::D::::R:G:::Y::::::TD:::::::::::::A::SRLI::E:::::::P:: HVO_0549 :::::::::S::VS::A:S::G:Y:T::Y:::::::::::::::KH:D:::::::::S:T Hbo0980 :I::LS:K:S::::::K:Y::G:YD:D:F:::::::::::::::R::D:::::::::::P Hut0688 LAM::::H:::VID:SV:::IESV:::::::A:QH:::S:A:V::L:::D:::::::RPD Hmu0278 ::I::S:R::V:WD:NV::::DAI:T:VI::S::HAG:L::Y:H:LYEDA:::::::PT: rrnAC2551 :IL::S:Y::V:Y:::VI:::DAI:TSA::EA:QHE::I:AT:Q:LA::A::::::::TD consensus DALAWGAATAALKRTIPGDLAVVTPAEVESVVDGET--GISR-- #oth 63.441311.212.136.13244425212323455826524122 Hut3000 V::EQA::::::::::G::A:TIR:EM:::IL::DV:EE::::: HQ1455A H:::T:::::::::::K::I:AI:::::AA:R:TD:TE:::::: VNG0158 :::::::::::::::::::V:L::R:D::::LAD:H:S::D::: rrnAC0545 :G:::::::::::::::::I:::S:D:IR:ILS:D::EA::::: Hmu1351 T::EYA:G::::::S::::I:::::T::AA:IE:G::AD::::: hla0075 :S:E:A::A::::::VD:::::I::GD:::::::AG::::N::: hla2114 A::R::S::::::::TD:::::T:R:::R::I:::S::::N::: HVO_A0328 T:::Y::::::::::VH::::::::D:::R:LR:GD:A::D::: HVO_0549 ES:E:AS:::SF:::VE::I:::::ED::R::AE:G:D:::::: Hbo0980 ES::Y:::::S:::::D::::::::E:::A::EE:::G:::::: Hut0688 A::SHAV:A:T:T::T::PIPAFDRTD:::L:EQLE::----:: Hmu0278 Q:::Y:T:A:::T::V::P:PTISAG:::GL:ET:REPTGE:SI rrnAC2551 EV:LH:V:A:::S::LS:P:TPLE:S:::RL::SQQ::--::RP