|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1442 | hla1510 | NP3194A | HQ3207A | HVO_2601 | Hbo2243 | Hut0760 | VNG1864 | Hmu2361 | rrnAC3423 |
973 | hla1510 | 1446 | 824 | 858 | 876 | 891 | 778 | 830 | 801 | 819 |
1041 | NP3194A | 824 | 1417 | 873 | 858 | 868 | 871 | 920 | 875 | 914 |
1041 | HQ3207A | 858 | 873 | 1755 | 968 | 997 | 886 | 913 | 880 | 876 |
1142 | HVO_2601 | 876 | 858 | 968 | 1500 | 1057 | 924 | 879 | 936 | 950 |
1153 | Hbo2243 | 891 | 868 | 997 | 1057 | 1494 | 944 | 935 | 949 | 961 |
1110 | Hut0760 | 778 | 871 | 886 | 924 | 944 | 1431 | 921 | 1009 | 998 |
1105 | VNG1864 | 830 | 920 | 913 | 879 | 935 | 921 | 1449 | 968 | 997 |
1112 | Hmu2361 | 801 | 875 | 880 | 936 | 949 | 1009 | 968 | 1501 | 1016 |
1129 | rrnAC3423 | 819 | 914 | 876 | 950 | 961 | 998 | 997 | 1016 | 1404 |
238 symbols consensus MDQVFAPWRIEWVERDDK-------NDDVDGCPFCALPERDD--DRENRVVARSDHAFVL #oth .1221.....1..1.2431111122434313.2..2113322111143321.123122.1 hla1510 ::RIY:::::::::::AD:::::::--PIE:::::V::::E:::A:DA::::::ERNY:: NP3194A ::::::::::K::::E::::::::::EAI::::::V::::::::AS:SL:::E:E::::: HQ3207A :E::::::::::::::ET:::::::-ESI::::::V::A:KPTR:::S:I::::Q:S::: HVO_2601 :::L:::::::::A:::DQDADADDP::D:R::::::::::::::::SKI::::P:S::: Hbo2243 :::I::::::::::::GE:::::SDA:GG:A:::::::DA::::::::::::::::S::: Hut0760 :::::::::::::::SE:::::::::P:::A:I::E::GW::::::T::LI:EN:::Y:: VNG1864 :E:::::::::::::::T::::::TD::::-:V:::F:G:EH::A:QHL::::T:::A:M Hmu2361 :E:::::::::::::EE:::::::::P:::-:V::::::::::::::H:::::N:::Y:: rrnAC3423 ::K::::::::::::EKT::::::::P:::-:V:::FQAQ::::::A:NL:::::::::: consensus LNNYPYNPGHVMVIPRRHTGDYGDLDDEELLDHARLKQRTIDALDAALDPDGFNAGLNLG #oth ...1..2...3....36.313362.4342.11.121.32.33.244223.114.2.2... hla1510 :::A::::::A:::::E:RE:PT::::AT:::::K::AA:LA:MRRDV::::V:T:Q::: NP3194A ::::::::::A:::::P:V:E:PE:EPDV:F::::::::::E::N::FE:::I::::::: HQ3207A :::::::::::::::DH:::SWDA:N:T:::::::T:TA::N:IQS:F::::I:T:E::: HVO_2601 ::::::A::::::::H::::EFAA:S:A:::::::::SK:LA:::::F::A:::::E::: Hbo2243 :::::::::::::::Y::S:SWS::S:::::::::::A::V:::ND::G::AA:::E::: Hut0760 ::::::::::A:::::T:::A::::::::::A::H::::::::M:::F::::Y:V::::: VNG1864 ::::::::::C::::DV:::::::::ADT:::::::::A:L:::::::G::A::T::::: Hmu2361 :::A::S:::L::::YQ:::::RA:PE:V::A:G::::::F:::E:S::::A:::::::: rrnAC3423 :::::::::::::::HT:::E::::::KT::::G::::::F:::ET::S::A:::::::: consensus GSAAGGSIDDHLHTHVVPRWNGDTNFMPVISDTKVIVEALDDTYDRLHEAF--------- #oth 2311....3......2....3..1.1.11322.1.1.1121212122221.111111111 hla1510 A:::::::-::::::::::::::::::::TG::::::::I:R::EH::AG:::::::::: NP3194A -E:S:::::::::::L::::H::::::::C:::::::Q:VEE:HEQ:M:::::::::::: HQ3207A :D:::::::::::::L::::R::::M::I:NG::::::::::::::::D::TTLQPAVDT HVO_2601 :::::::::::::::::::::::::::::::::::L:Q::::S::QI::::::::::::: Hbo2243 :G:S::::E::::::I::::::::::::::G::::::::::::F:::::::::::::::: Hut0760 ::::::::::::::::::::E::N:::A:V:E::::::::E:S:E:::D::::::::::: VNG1864 :G::::::G:::::::::::::::::::::::::::::::::::::::D::::::::::: Hmu2361 :GP:::::E:::::::::::E::::::::::::Q::::G:E:::::V::G:::::::::: rrnAC3423 :::::::::::::::::::::::::::::::::::::::VEE:::::YA::::::::::: consensus -------------------------AAQDDATADDD---GDA--VDFE---------- #oth 1111111111111111111111111143412646431112322323154433121111 hla1510 :::::::::::::::::::::::::::G::VVDPG:VEA:::VKL::DV::::::::: NP3194A ::::::::::::::::::::::::::::P:TEPL:S::::AVF:::I-:::::::::: HQ3207A SHQMTDTENKQQETRNMGNNADHTS:M:Q::D:EAS:::NQ:VTLR:DSHEISS:::: HVO_2601 ::::::::::::::::::::::::::GL:G:L::G::::D:::::R::LD:::::::: Hbo2243 ::::::::::::::::::::::::::::EG:SV:GS:::N::VEL:::FPSDS::::: Hut0760 ::::::::::::::::::::::::::D:SG:IVT:P:::D::::IS:S:::::::::: VNG1864 :::::::::::::::::::::::::L:RP:::EAPT::::AVF::::N:::::::::: Hmu2361 ::::::::::::::::::::::::::::::::VV:::::DT::::A:GSERGSNCRER rrnAC3423 ::::::::::::::::::::::::::S::GT::PE:::::A-:::RI:::::::::::