Home |  Text search
[U] (Ffh) COG0541 Signal recognition particle GTPase
9 genomes BUD0318 9 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi

VNG2459

rrnAC3124

HVO_0123

Hbo1373

Hmu2646

Hut1962

hla0043

NP0096A

HQ3418A

Pairwise sequence scores
Consensus score3496 VNG2459 NP0096A hla0043 HQ3418A HVO_0123 Hbo1373 Hut1962 rrnAC3124 Hmu2646
2999VNG2459 3457 2797 2799 2807 2864 2838 2770 2778 2708
3097NP0096A 2797 3491 2869 2888 2882 2924 2831 2815 2796
3115hla0043 2799 2869 3617 2926 2961 2917 2773 2760 2725
3092HQ3418A 2807 2888 2926 3484 2995 3076 2757 2774 2711
3132HVO_0123 2864 2882 2961 2995 3489 3077 2789 2767 2733
3152Hbo1373 2838 2924 2917 3076 3077 3476 2775 2768 2730
3012Hut1962 2770 2831 2773 2757 2789 2775 3528 2893 2868
3009rrnAC3124 2778 2815 2760 2774 2767 2768 2893 3539 3183
2954Hmu2646 2708 2796 2725 2711 2733 2730 2868 3183 3527

495 symbols
consensus       --------------------MVLDDLGSSLRGSLDKLRGKSRLSEDDVEEIVKEIQRSLL
#oth            11111111111111111111....1..1...12..3.1..1111.2.1231.1.......
VNG2459         ::::::::::::::::::::::::::::::::T::T::::::I::E::DKV:::::::::
NP0096A         ::::::::::::::::::::::::::::::::T::::Q::TT::::::::::::::::::
hla0043         MYSATADEQSFTASAAYFRQ:::::::T:::S:::::Q:::::::S::::::::::::::
HQ3418A         ::::::::::::::::::::::::N::::::::::::Q:::::D::::::::::::::::
HVO_0123        ::::::::::::::::::::::::N::::::::::::::::::D::::Q:::::::::::
Hbo1373         ::::::::::::::::::::::::N::::::::::::Q:::::D::::::::R:::::::
Hut1962         ::::::::::::::::::::::::::::::::A::G::::::I::E::QAV:::::::::
rrnAC3124       ::::::::::::::::::::::::::::::::T::D:::::::::E:I:D::::::::::
Hmu2646         ::::::::::::::::::::::::::::::::T::D::::::I::E:I:D::::::::::

consensus       SADVDVDLVMDLSDSIKTRALEEEPPAGTSARDHVLRIVYEELVDLVGESTELPLEEQTI
#oth            1...1.3..11..31.33.113....1..111.1..1.....1.2.1.1..31..13...
VNG2459         Q::::::::::::E::TE:S::::::G:::::::::::::::::G:::D::PI:::::::
NP0096A         ::::::::::::::::RE:::D:::::::T::::::K:::::M:E::::::A::::::::
hla0043         ::::::S:::E:::::::::::::::G::T:K::::K:::::M:E:::D:::::::N:::
HQ3418A         ::::E:S:::E::S::ED::TG::::::::::::::::::::::::::D::D:::KS:::
HVO_0123        ::::::S:::::::::::::::::::G:::::::::K:::::::::I:::::I:::S:::
Hbo1373         ::::::N::::::S:::E:::N::::G:::::::::K:::::::G:I::::DI:::P:::
Hut1962         Q:::::::::::::::E::::::::::::::::W::::::::::::::::::::::P:::
rrnAC3124       Q:::::G::Q:::N::E::::D:::::::TP::W::::::::::::::::::::::::::
Hmu2646         Q:::::G::Q::::G::S:::D:::::::TP::W::::::::::::::::::I:::N:::

consensus       MLAGLQGSGKTTTAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFYGDPD
#oth            2....1......11..1.....1....1.11....2.....1.121.111...2...21.
VNG2459         :::::::::::::::::::::::::::::IV::::::::::E::AE:AD::::::::E::
NP0096A         V::::::::::::::::::::::::::::::::::::::::::::E:::::::::::N::
hla0043         L:::::::::::S:::::::::::::::::::::::::::::::::::::::::::::::
HQ3418A         L:::::::::::S:::::::::T:::::::::::::::::::::E::::::::S::::::
HVO_0123        :::::::::::::S::::::::::::::::::::::::::::::::::::::::::::::
Hbo1373         L:::::::::::::::::::::T::::A:::::::::::::::::::::::::E::::::
Hut1962         V:::::::::::S:::I::::::::::::::::::W:::::E::EE:A::::::::::::
rrnAC3124       :::::Y::::::::::::::::T::::::I:::::D:::::::S:E:A::::::::::::
Hmu2646         :::::Y:::::::::::::::::::::::::::::D:::::::S:::ADN:::E::::E:

consensus       EDDPVKIARDGLEATADADVHIVDTAGRHALEDDLIDEIEEIESAVDPDRNLLVLDAAIG
#oth            32.1.3..12.111.21..12.......11.123..211.3.24314..22...1...1.
VNG2459         S::::Q::::::A:::::::::::::::::::::::A::::::GV:E:::S:::::::::
NP0096A         S::::E::ER:::E::::::::::::::::::EA::::L:A:::::::::::::::::::
hla0043         N::::A:::E::::::::::::::::::::::::::A::::::R::::::S:::::::::
HQ3418A         C::::::::E:I:::::::I::::::::::::A:::::::A:D:T:A:::S:::::::::
HVO_0123        C::::Q:::E:::::E:::::::::::::::::::::::::::GV:Q::L::::::::::
Hbo1373         :E:::::::::::::E:::I:::::::::::::A::::::D:D:::N:::S:::::::::
Hut1962         :::A:::::::::::D::::Q::::::::::::G::::L:D:::VA:::H::::::::::
rrnAC3124       :::::::::::::::EN:::R:::::::DG:NEE::EQ::R::QE:Q:::D:::::::M:
Hmu2646         SN:::E:::E::A::E::::R:::::::DG:NEE:::Q::R:GAE:Q:::::::I:::M:

consensus       QGAKDQARQFEDAIGIDGVAITKLDGTAKGGGALTAVNETDSSIAFLGTGETVQDIERFE
#oth            .2..3..43.3411..2..21...........1.2..11...1.1...2..1.1.1....
VNG2459         ::::Q:::::DAS:::::::::::::::::::S:::::::::T:::::S:::::::::::
NP0096A         :::::::ER:H::V::::::::::::::::::::A::DQ::::::::::::E:K::::::
hla0043         ::::E::::::KS:::E::M::::::::::::::::::::::::::::::::::::::::
HQ3418A         ::::Q:::E:NN:::::::VV::::::::::::::::::::::::::::::::::V::::
HVO_0123        ::::E::Q::DES:::G::V::::::::::::::::::::::::::::M:::::::::::
Hbo1373         ::::::::::D:S:::::::::::::::::::::::::::::::G:::::::::::::::
Hut1962         :E::E::SR::::V:::::V::::::::::::::V:::::::T::::::::::K:V::::
rrnAC3124       :S::S::AD::A:::::::V::::::::::::::A:::::::T:::::S::::K::::::
Hmu2646         :S:::::QE:::::::::::::::::::::::::A::DQ:::T::::::::::K::::::

consensus       PSGFISRLLGMGDLKQLSERVERAMEETQE-EEEDWDPEDMMKGEFTLKDMRKQMEAMNR
#oth            .21...........1..1.......2.1121312..2..1213.3...1..22..31.12
VNG2459         :DS::::::::::::::T:::::::::::D:DD:::::::L:::::::H::::::Q::DN
NP0096A         :::::::::::::::::::::::::::::A:-::::::::L:::::::::::N::N:::K
hla0043         :::::::::::::::::::::::::A:A::::D::::::::LQ::::::::KR::D::::
HQ3418A         :N:::::::::::::::::::::::A:::::ADD::::::I:E:S:::::::::::::D:
HVO_0123        :N:::::::::::::::::::::::S:::A::D::::::E::::N::::::Q::::::DK
Hbo1373         :N:::::::::::::::::::::::A:::::::D::::::I:::S::::::Q::::::::
Hut1962         ::::::::::::::Q::T:::::::::::A:::G::G::::LD::::::::::::::::K
rrnAC3124       :::::::::::::::::T::::::::::::GD:::::::::LE:Q::::::::::QT::N
Hmu2646         :::::::::::::::::T::::::::::G::::G::E:::::E:S::::::::::::::N

consensus       MGPLDQVMDMIPGLGGGLMDQLPDDAMDVTQERMRDFEVIMDSMTEAELENPRVVGASRT
#oth            .......1.....2...31.1.......1.12.113.11.....111.112..51.2.12
VNG2459         :::::::::::::M::::::E::::::::::::::G::::::::::::MAD::S::::QI
NP0096A         :::::::::::::::::IK:::::::::M::::L::::::::::S::::::::AI:Q:QI
hla0043         :::::::::::::M:::M:::::::::::::D:::R::R::::::DE:::Q:::::Q:::
HQ3418A         ::::::::::::::::::K::::::::::::N:::::D::::::::::::D::S:::::V
HVO_0123        :::::::L:::::F:::IK:::::::::::KD:::S::::::::::E::::::K:::::V
Hbo1373         :::::::L:::::::::FK::::::::::::D:::S:D:::::::::::::::TI::::V
Hut1962         :::::::::::::::::M:::::::::::::::::::::::::::::::::::QI:R:::
rrnAC3124       ::::::::::::::::::::::::::::::::::Q::D::::::::E:::::::::Q:::
Hmu2646         ::::::::::::::::::::::::::::::::::::::::::::::E:::::::::Q:::

consensus       RRIARGSGKDEETVRELLEQHKMMEQTIKQFQGMGDGDMQRMMKKMQQQGG-----GGGG
#oth            2..11...21111111..2..21.31123...1..11..1...211222..11111.31.
VNG2459         ::::::::QP:DR:::::D:::::A::MQ::::::::::::::S::::::::::::::::
NP0096A         E:::::::T::D::::::::::::SRMM::::::::::::::::Q:::G:::::::::::
hla0043         E:::::::T::::::Q:::::S::::::S::::::E::::::::::---::::::::E::
HQ3418A         ::::::::T:::::::::Q::::::R:::::::::E::::::::::::::::::::::M:
HVO_0123        ::::Q:::Q::::IQ::::::R::::::::::N::::::::::::L:N::::::::::::
Hbo1373         ::::::::::::::Q::::::::::R:::::::::::::::::::L:N::::::::::::
Hut1962         E::::::::PKDRI::::::::::DR:LN:::::::A::E::::Q:E--::DMGDM:DM:
rrnAC3124       K::C:::::P::R:::::Q:::Q:::ML:::::::::::E::::Q:::-:::::::::::
Hmu2646         E::::::::P::RI::::Q:::Q:D:MLN::::::E:::E:::QQ::::::::::::P::

consensus       GMGGM-GGG-GPFG-
#oth            .3.122111321.11
VNG2459         :F::::---:--:-:
NP0096A         :G::L:-::M::::D
hla0043         :L:D:M:::K:::-:
HQ3418A         :L::-::::L:::::
HVO_0123        ::::L:-::M:::-:
Hbo1373         :L::::---:::::D
Hut1962         :::::G::::N::-:
rrnAC3124       :::::G:::M::::D
Hmu2646         :::::G::::::::D