| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 3406 | HQ1281A | HVO_0658 | Hbo0870 | hla2724 | VNG0243 | NP5228A | Hmu0627 | Hut0322 | rrnAC1758 |
| 2087 | HQ1281A | 3704 | 1761 | 2069 | 1777 | 1727 | 1761 | 1838 | 1832 | 1802 |
| 2490 | HVO_0658 | 1761 | 3567 | 2312 | 2087 | 2084 | 1946 | 2016 | 2048 | 2143 |
| 2518 | Hbo0870 | 2069 | 2312 | 3519 | 2135 | 2015 | 1991 | 2055 | 2006 | 2119 |
| 2518 | hla2724 | 1777 | 2087 | 2135 | 3718 | 2041 | 2046 | 2103 | 2069 | 2219 |
| 2473 | VNG0243 | 1727 | 2084 | 2015 | 2041 | 4439 | 2102 | 2098 | 2109 | 2163 |
| 2478 | NP5228A | 1761 | 1946 | 1991 | 2046 | 2102 | 3343 | 2051 | 2074 | 2202 |
| 2516 | Hmu0627 | 1838 | 2016 | 2055 | 2103 | 2098 | 2051 | 3320 | 2230 | 2395 |
| 2589 | Hut0322 | 1832 | 2048 | 2006 | 2069 | 2109 | 2074 | 2230 | 3446 | 2400 |
| 2690 | rrnAC1758 | 1802 | 2143 | 2119 | 2219 | 2163 | 2202 | 2395 | 2400 | 3508 |
649 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 HQ1281A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0658 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0870 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2724 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0243 MPNAAGWTDVVVSAASSQGYAGAGRPSGHETGHRRPHGHRNGAGKARRAGRPRLAERLRV NP5228A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0627 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0322 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1758 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 HQ1281A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0658 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0870 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2724 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0243 HRRSRRPPVERRGADESRGESRQRARALRALRGSQTRRAAHGAHLGRRPHPTGAGDADGA NP5228A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0627 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0322 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1758 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ---------------------MREAHPIERAVGIEYYVSDADGTGGRLRDSPADFRVREL #oth 111111111111111222222116222512321232.21131.21.1..53.21.3...3 HQ1281A :::::::::::::::::::::::ISPSR:QT::::::Y::T:::D::::VR::::Q:::I HVO_0658 :::::::::::::::::::::::::::L::::::DS:::::::V:::::VA:E::::::: Hbo0870 :::::::::::::::::::::::N::SL::R::::H:::::E::::::::A:E::::::V hla2724 :::::::::::::::MAPSIPL:::::A:::A::DH:::::::I:::::E::D::::::: VNG0243 RHRARARRRRRPDHGRPLAVL::::::::::::MA::A::S::::::::::::::::::: NP5228A :::::::::::::::::::::::DS::V:QT:::::::TET:::::::::R::::::::R Hmu0627 :::::::::::::::::::::::------------:::::G::I:::::A::E::A:::: Hut0322 :::::::::::::::::::::::Q:::V:Q:::M::::::S::V::H::RE::A:G:::V rrnAC1758 ::::::::::::::::::::::QA:::::::::M:::::::::V:::::S:::::::::: consensus EAF--DAEPADADTGDYPHLVLRATLREWDTNDFASRLSDALGISRERVSWAGTKDKRAV #oth .2322343141134.2114112.11.34.1....1352115113.....1......12.2 HQ1281A :TI::EP::I::SV:::::VL::V::SK::::::VQQ:::N:E::::::::::::::Y:I HVO_0658 :LDSLNVR:P::P:::F:N::::V:::G:::::::G::::E::A:::::::::::::H:: Hbo0870 ::M::::VDV:E:P::::S:L::V:::::::::::R:::::::::::::::::::::Y:: hla2724 :::::EP::LG::::S::E::V:V:::D:::::::R:I:::::::::::::::::::::: VNG0243 ::::::TQ::::P:::::W::V::::H::::::::RE:ANTV:M:::::R::::::RH:: NP5228A :::GA:CR:L:::P:S:::::F::::::::::::::AV:N:::V:::::::::::::H:: Hmu0627 :::::E:::::::S:A:A:::V::::HN::::::::A:::R::::::::::::::::::: Hut0322 :::::QV::I::KQ:A:::V:F::::AG::::::::V:::H::::::::::::::::Y:E rrnAC1758 ::::::T::V:::::A:::::F::E::N:E::::::K:::R::::::::::::::::::: consensus TTQLFSVRDVDAADLP--EIRNADIEVLGRAGRPLLFGDLAGNAFEIRVRD--PDAPDNA #oth .....2235531343222225121.112..3..425....1..4.224122113242442 HQ1281A ::::::IARINPNNKSLTA:P:::::::::I::::Q::::G::S:::C::S::ATDTSVV HVO_0658 :::::T:NGG::::V::::VP::::::V::L::T:D:::::::G:R::::::::ET:::: Hbo0870 :::::::::ASPDEI:::A:N:::::::::I::D:G:::::::D:DV::::::A::SA:: hla2724 :::::TL:E::PD::::::::G:E::P::::::R:S:::::::::::::A:TV:E::ERV VNG0243 :::::A:::L:::QV::::::::::::V:::::G:E:::::::::::V:::::::::ER: NP5228A ::::::::HD:::-::::DLDG::::PI::::::V::::::::E::LVI::::::R:EH: Hmu0627 ::::::IA:A::::V:::::DG:E:D:V::::::V::::::::::::I::E::V:R::GV Hut0322 :::::::AK::P:::ETIDLS:VE::::::S:::I::::::::::::EISE::::::G:L rrnAC1758 :::::::KG:A:G:::::::GGT::::I::::::I::::::::::::V:::::TENT::: consensus AAVTAELRAFG---------G--S-GGEA----TVGVPNYFGQQRFGSRRPVTHEVGLAV #oth 242333.521322323333224345254433344212..1..2.....3..1..2..121 HQ1281A D:I::::H:YTVSNNHSQDDDTQ:VYAGDTNKVSIAF:::::H::::::::I::R::R:I HVO_0658 ::::DA:TE:::::::::::-::-::R:G::::R:::::F::H:::::I::I::T:::H: Hbo0870 :T:::Q:Q::L::TDEDAVD:AATE:ET:::::A:A::::::H:::::::::::::::H: hla2724 :D:VGD::::::::::::::-::GDAE::KDDA:::::::::::::::::::::R::::: VNG0243 :::AD::A::::::::::::-::-:::--:::::::T:::::::::::K::::::::::I NP5228A E:TA:::CD:::::::::::-::-:::::::::--:::::::T::::::::I::R:::D: Hmu0627 DGI:EQ::E:A::::::::::SADAAD:P::::::A::::::::::::K::I:::::::I Hut0322 DG:LD::A::A::::::::::SA:G:::DDGSIRI:::::::::::::Q::::::::::: rrnAC1758 :S:V:D::::ANGDDSVTSE:WS:DATLPDGDT::::::::::::::::::::::::::I consensus VRGDWRDAVLAYVGNPNEREPEDTQAAREYVDE---------------------DPDWEG #oth 2123143.134.3231525.1261132.5424111111111111111113222424..34 HQ1281A ::NA::::::Q::A:SF:S:::T::R:::FAS:::::::::::::::::QAGSSR::::E HVO_0658 :::E::E:::::C:G:T:D:::E:::G:AV:::::::::::::::::::EAASA::::HR Hbo0870 :::E:CE:::S:::::ASA::DG:::::RF:::::::::::::::::::QAASD::::HA hla2724 ::D:F:E::RL:A::SSDT::D::R:::DR::AAFGVGGDDTGDGSDPSADGTG:G:::T VNG0243 L:D::EA:AM::L:A:T:H::A:S:R:::::A::::::::::::::::::::::TR::T: NP5228A LD:::EA:AVR::CESS:::::R::EV::GI:A::::::::::::::::::::::R::AA Hmu0627 ::N::EG::M::L:::::::::A:::::A::E::::::::::::::::::::::TH:::: Hut0322 A::G:T::::::::::HD::R:::RK::K::T::::::::::::::::::::::TE:::: rrnAC1758 A::E:K::::::::::::::::S::E::G:::::::::::::::::::::::::TH::A: consensus ALDRLPGALRYERSMLHRLAEAGAE---SP--EDFRHALEAVPSNLQRLFVNAAQSYVFN #oth 12233.44.11.132312.215235212531133215.1132.3...31..1....22.. HQ1281A :IE:M:N:::F:Q::::::N::N:NIDSDA::ATW::::M:::K::::::::::::DL:: HVO_0658 ::::I::Y:G:::G:::::::D::::::TD::::W:N:::S::::::::::::::::A:: Hbo0870 ::ETM:NR:::::::::::::D:D:::::A::::W::::::::R:::::::::::::::: hla2724 C::AI::K::F::::V:::::RDVAPDAP:DH::W:::::::::::::::::::::FL:: VNG0243 ::AEF:QR:::::T:::E::DG:S-:::--::--::D:V:TF:::::Q:::H:::::::: NP5228A :GE::::S::F::AIAN::::-::::::::::D:Y:A:::EL::::::M::::::::::: Hmu0627 ::E:F:R::G:::ALC:S::D:DDA:::::::AA::S:::TL:T:::T:::::::::L:: Hut0322 ::::::KR:G:::::C:::V:N::D:::D::::::QE::::::T:::Q:::::::::A:: rrnAC1758 :::::::::G::::IC:::V:N::S:::E:::A:::E::::L:::::S:::::::::::: consensus RILSERLRRGLPFDRPVAGDVVCFADSDAPEELELPDPDRTQRVTARRVDTVRRHCERGR #oth 122.1.231111231.12..1.1.3.3132554551.33.2.42134114215..1.... HQ1281A ::I:::::HDI:IH::I:::I:::Q:QNS:T:VIR:::A:::LT:E::::IMQ::::::: HVO_0658 :M::::RD::::::E::E::::::::R:::GG:::::VS:L:TA:G::::VMS::I:::: Hbo0870 :::::::D::::LT::IE::::::::R:V:DR:YRA::::::VA:G:::EVMS::::::: hla2724 QV:::::::::S::::::::::::::G::::::YA::T::L:::DED::AV:T::::::: VNG0243 ::V:::MA:::::GE:::::::W::::::DAAVAQ::AA:Q::::DS:::VMA::::::: NP5228A ::::::::::::::E::V::::::S:::GN-----:::::::T::ES:LE:::::::::: Hmu0627 :V:::::D::::::::::::::::::::::DG:P:::T::::::::G:::::E::::::: Hut0322 ::::A::E::::::E:::::::::::::::::I::::TG:::::::DN:G:::::::::: rrnAC1758 :::::::E:::::::::E::::::R::::::DFPI::A::::E:::K:LS::E::::::: consensus AFVTAPLVGTDTELADGEPGEIERAVLADLDLEPADFDLPGEFDSSGTRRAILLRTDLD- #oth .......2..213112.2211.213.131322323..2...4.3.5.1...221222262 HQ1281A ::::::::::Q:NF:S:K:::::KS:::EY:IT:E::::::T:::R:::::MA:Q:NIST HVO_0658 :::::::::::::::E::Q:D::::::D::::::G::::::N:R:T:::::::V:::::V Hbo0870 ::::::::::E::::E::A::::::::NE::::::::::::::::T:::::V:::::VE: hla2724 :::::::I::E:D:G:::::::::E::::AGI::G::A:::D:::::::::::::S::N: VNG0243 :::::::::::::F:::D::::T:G::D::G:SR:::::::::::A:S:::::::P::T: NP5228A ::::::::::E:VFG::::A::T:E::::V:VS:T::E:::::G:::::::V:VT:::T: Hmu0627 ::::::::::E::::E:::::::::::::AE:::T::A:::::::::::::VQV:SQI:: Hut0322 :::::::L:::S::::::::::::::FE::GIG::::::::::H:E:::::::::::IA: rrnAC1758 ::::::::::::::GS::::D:A:E::D:VG::QG::::::A:::D::::::::::::G: consensus ------------V-ERDPDDLTFSFALPKGSYATVVLREFLKADPADL- #oth 222222122223215534443515.2..3.1...112..22.64.4311 HQ1281A KADCNTDSDKHNI:DQSGQSYKLV:T::P:A:::A::::Y::VA::K:: HVO_0658 ERESGDDDADTDA:AGGA:::V:D::::H:::::A:M::Y:::G:L::: Hbo0870 ::::::::::TT::DS:A:TYELT:S::S:::::AL:::Y::TT:Q::: hla2724 ::::::::::::::TF:DG:PR:A::::S::::::L::::T:SG:L::: VNG0243 ::::::::::::::SH::--:A:E::::S:::::::::::::PS:LA:: NP5228A :::::::::::::::QE:--::L::S::::::::::A::::::::EA:S Hmu0627 :::::::::::::RR::G:AVE:A:S:::::::::L:::Y::R:::Q:: Hut0322 ::::::::::::::::::--::L::::::::::::::::IT:::::::: rrnAC1758 :::::::::::::::::SA::::::S:::::::::L::::R:G::DA-: