| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||
|---|---|---|---|---|---|---|---|
| Consensus score | 4186 | NP0830A | hla2474 | HQ1681A | VNG0562 | rrnAC3530 | Hmu0998 |
| 2670 | NP0830A | 4264 | 2234 | 2228 | 1957 | 2255 | 2299 |
| 2955 | hla2474 | 2234 | 5261 | 2525 | 2187 | 2580 | 2545 |
| 3040 | HQ1681A | 2228 | 2525 | 5163 | 2543 | 2642 | 2612 |
| 2753 | VNG0562 | 1957 | 2187 | 2543 | 3576 | 2526 | 2490 |
| 3455 | rrnAC3530 | 2255 | 2580 | 2642 | 2526 | 4210 | 3147 |
| 3441 | Hmu0998 | 2299 | 2545 | 2612 | 2490 | 3147 | 4222 |
775 symbols consensus --------MADIPSLRPLLAILVSAVAIPLIFASKRRPNIREGWTIAAAVAKFAIVASMV #oth 111111223353321112323232333344133343331311232153123322221111 NP0830A MTEAIVASV:TE::::::AVL::PL:TVG:::L::N::::::A:S:L:::TM:G:::::: hla2474 ::::::MIE:P:TD::::::V:::F::AFF:V::Y:S::V::::::V::::::::::::L HQ1681A ::::::::::E:I:::::::VILP:IG:AG:VL:R:YQ:::::A::IT::STV::I::LL VNG0562 ::::::::--------------------------------------------------:: rrnAC3530 :::::::::T::T:::::F::::::::::V:LSL:::::V:::V::TV:::::::::::: Hmu0998 ::::::::-MID:::::V::::A:LL:::::::TSS:R:L:::V:::::LT::GLI::L: consensus PAVL-AGAVYETSLGTFVP-GIELALRADALGLLFALLASGLWIVTSFYSIGYMRGLDEH #oth .31214.5222341241231.1212111.1..3..111..3.122111........22.2 NP0830A :D:::N:R:H::D::F::E:::::V::::G::M::::V::::YV::AI::::::::HH:P hla2474 :::::D:::F:W:::A:L:G:::FV:::::::M:::F:::::::::::::::::::N::V HQ1681A :::::::N::I:N::S:::::VAFT:::::::T:::::::F::VI::::::::::::G:: VNG0562 :GAI:::D::V:T:S::::::VS:::::::::V:::::::T::LAA:::::::::::G:: rrnAC3530 :G:::S:TR:VF:F:QLAT::::::F:V:::::::G::::L::::::::::::::::::: Hmu0998 :S:VWG:ET::YA:F:LAS:::::::EV:::::::G::::L::::::::::::::::::: consensus AQTRYFASFAASLAAAIGVAFASNLLTLFVFYELLTVATYPLVTHDETDEARAAGRKYLA #oth 3...1..2112.2211311...2..331222..1.121.....2...112..21.1...1 NP0830A F:::F::MLC::VG::L::::::::FM:L::::V::L::::::A:::SEK::VS:Y:::: hla2474 N::::::A::V::S:TM:I:::G::V:I:::::::SI::::::A:::::::::::::::: HQ1681A ::::::::::G:VS:::::::::::II:YI:::::::::::::::::S:A:::::::::: VNG0562 S::::::A::G:I:S::A::::A::VV:YLA::::::::::::V:::::A:::::::::: rrnAC3530 ::::::::::::::S:::::::::::::::C::::::S:::::::::::::::::::::: Hmu0998 ::::::::::::::::V:::::A:::::::::::::::::::::::::::::T::::::T consensus YT-FGGGVAVLAGTVLVFWAT--GTTAFTPGGIEGLAT---ADPTLARAAFALLAGGFGV #oth .1111..11.11.32111331111122.13..122..21112..42.121.2..23..1. NP0830A :A:LS::L::FG:MLA:Y:L:DPS:IT::R::::::::VAA:::WA::G:::::::::A: hla2474 ::M:::::L:::::A::YLIA:::NVS::A::::E::N::::::G::ML::F:::I:::: HQ1681A :::::::::::::I:::::S:::::V:::S:::AS::S:::I::LI::G::::::::::: VNG0562 :::::::::::::V:::YH:::::::::A::::G:::::::::::::::::G::IT:::: rrnAC3530 :::::::::::G::::::VLA:::::::A:::L::::::::::::::::::::::A:::: Hmu0998 ::::::::::::::::L::::::::::::::::AE::::::T::AI:::I::::VT:::: consensus KAALMPLHSWLPDAMVAPTPVSGLLHAVAVVKSGVFGIARVVLDVFGPETVAQLGV---- #oth ..121.2.1...2...................1.1..21.221..1.2211331221111 NP0830A :::V::::::::S:::::::::::::::::::A:A::V::TII::::::::R:I:M:::: hla2474 ::GI::::Q:::E:::::::::::::::::::::A::VS::::::::::L:FD:SLPFGF HQ1681A ::::I:V:::::::::::::::::::::::::::::::S:L::::Y:::::::::::::: VNG0562 :::::::::::::::::::::::::::::::::::::::::L:::Y:IDL::H:N::::: rrnAC3530 ::::::V::::::::::::::::::::::::::::::::::::::Y:TG:ME:::::::: Hmu0998 ::::::M::::::::::::::::::::::::::::::L:::I:::::::::ES::::::: consensus --GLPLAVVAAITLLIASIIALRQDNLKRRLAYSTISQLSYIVLGLGL--------LSGQ #oth 11.221232122.133..21..12.1..2...1..11.....1...21111111112445 NP0830A ::::::TIA:GA:I::::LF::::::::A:::::::A:::::::::S::::::::::::M hla2474 SA::V:STIG::::TA:::::::K:H::Q::::::V::::::I:::::::::::::FGWY HQ1681A :::V:::::::::IV:::V:::::::::::::::::::::::::::::::::::::F:PE VNG0562 :::MAV::::::::IV::V:::::::::::::F::V::::::::::AVGAATPGADATKW rrnAC3530 :::::::AI::F:::T:::::::::::::::::::::::::::::::::::::::::H:: Hmu0998 ::::::::::TA::::::::::GR::::::::::::::::::::::A::::::::::KES consensus ALIGGLLHIPAHAFMKLTLFFCAGAIHVETHTDDISDMAGIGKRMPLTMAAFAVASAGMA #oth 1.3.1.........1.....1...111.111112..2...1.1...1..3..22.131.. NP0830A G:M:::::::::::S:::::L::::LY::LDVKY::E:::V:::::V::G::GL::FS:: hla2474 G:V:A:::::::::::::::::::NL::S::::Y::E::::::::::::G::T:::L::: HQ1681A :::::::::::::::::::::::::::::::::N::K:::::R::::::S:::I::V::: VNG0562 :::::::::::::::::::::::::L:::::::::::::::::::::::T:::::A:::: rrnAC3530 ::T::::::::::::::::::::::::::::::::::::::::::::::::::::A:::: Hmu0998 ::::::::::::::::::::::::::::::::::::::::::R::::::::::::::::: consensus GIPLVAGFVSKWYLLIGAIE-GGGL-----VFAAALLLSGVLNIAYFWPIVYQAFFESED #oth .1..2......12221.334221321111142232.12..1..11....11.1.1.1232 NP0830A ::::M:::::::H:IW:GA::A:Y::::::LV:PL:V::::::V::::::I:T::::::: hla2474 ::::L::::::Y:M:::G:RM:AQ:TPVAYYLVG:::::::::::::::VI:T::::A:: HQ1681A :L:::::::::::::::SVD:A:YP:::::I::IV::G::I:::::::::::::::QTAA VNG0562 :::::::::::YF::::TVT:::H::::::::T::::V:::::::::::V::T:::::QG rrnAC3530 ::::::::::::::V:::LSLN:::::::::::::::V::::::::::::::::Y:::P: Hmu0998 ::::L::::::::IV:::::::::W:::::F::G::::::::::G::::V::::Y:::P: consensus DHDEKPLVDGPLGGRDA---PATDGGEPRDA-----------------------ADG--- #oth 33.2..124242..35522235321.3443322222222122122212222222222333 NP0830A :A:Q::VL:N:F::VFDDDAYL::::VSS:D:::::::::::::::::::::::---::: hla2474 A::A:::::FRM::ESRSTL::::::R:E::DGDDGDSDDTAATDIDIDEVVES:E:DSA HQ1681A ET:A::V:EFS:::QWH::::IRTD:HG:EYGDEHTEETDADADADDDADITAAS:AVNN VNG0562 :S::::::S:A::::L-:::----::HT:AD:::::::::::::::::::::::---::: rrnAC3530 G::::::IG:::::::K:::VRA::::DHESG:::::::::::::::::::::A:::::: Hmu0998 ::::::::R:IF::QT::::VE::::::VG:::::::::::::::::::::::::::AET consensus --HDDTDDEPDDRET--------------------------------------------- #oth 323424233343522222211111111111111111111111111111111212222221 NP0830A ::-QHE::SH::HH-::::::::::::::::::::::::::::::::::::::::::::: hla2474 VDAE:A:SVS::V:VPDDSDIPDAEMDDLPTDEDGVVRPNFDTSDRDFSEPADRVDTGDY HQ1681A KQS::::S:SSQ:::ALSGD::::::::::::::::::::::::::::::PSDPNAETTY VNG0562 ::-------------::::::::::::::::::::::::::::::::::::::::::::: rrnAC3530 :::S:GGEV:KPEHV::::::::::::::::::::::::::::::::::::::::::::: Hmu0998 GD::H:::::EPY::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------DHLGK-------------------------ADENHGHHGGPPAGG--- #oth 11122111222223313222221122112222212122221252452434212231.111 NP0830A ::::::::::::-----:::::::::::::::::::::::::D:GH:ARPEL:::::::: hla2474 AVDSRPSDADVPFGV:RGDANSADEADDQTDHGDHDTGHDDH::HD:::A:::::::::: HQ1681A AVDMYPSDHTTA:TE:SAQKTTADTIDDTDESIDPDSASSDNETL:T:MNR:QDST:VDA VNG0562 ::::::::::::-----:::::::::::::::::::::::::--------::HEG::::: rrnAC3530 ::::::::::::::::::::::::::::::::::::::::::H::E:E:::::::::::: Hmu0998 ::::::::::::::::::::::::::::::::::::::::::Y::G:D::::::E::::: consensus ------------------------------------------------------WDRRG- #oth 111111111111111111111111111111111111111111111111111111123341 NP0830A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::SN: hla2474 :::::::::::::::::::::::::::::::::::::::::::::::::::::::THIDG HQ1681A SSSTDSSSKSPTPDASLLNTPETEVDDNTDTSANIDHPDIDAPDHDDAYMSDPV::::T: VNG0562 ::::::::::::::::::::::::::::::::::::::::::::::::::::::FE::A: rrnAC3530 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::D::: Hmu0998 :::::::::::::::::::::::::::::::::::::::::::::::::::::::TAA:: consensus ---WRGGESTWFLLGPILTAATGAVLLGVIPDTAVFLELIETIVDNALGVMV--- #oth 1113313.2111321.21312212331.22.3331.1311331.23323243222 NP0830A ::::Y:::T:LL:VA:LV:T::LMFIF::A::YI::FD:::G:::G::E:DN::: hla2474 LDVLL:R:::::T:A:::::MSL::::::::YEMG::::::L:::TR:PEE:MRP HQ1681A :::IY-T:::::M::::VI:V::::A::I::QQV:::S:::QV:TA:T::II::: VNG0562 :::VS:A:GS:::I::VVF::F:SIV:::::::::::S:VR:V::T:TAMG:VGV rrnAC3530 ::::::::::::M:::::::::LSL:::TV:Y:::::RIVD:::G:LP:::A::: Hmu0998 ::::::::::::I:::::A::::::V::IV:N::::::IVT:V:::-::::::::