|
Pairwise sequence scores | |||||||||
---|---|---|---|---|---|---|---|---|---|
Consensus score | 4144 | NP1742A | hla0893 | HVO_2302 | HQ3347A | Hbo1988 | VNG1770 | Hmu2260 | Hut0240 |
3118 | NP1742A | 4142 | 2734 | 2723 | 2738 | 2807 | 2461 | 2799 | 2759 |
3264 | hla0893 | 2734 | 4187 | 2914 | 3007 | 3063 | 2470 | 2682 | 2484 |
3267 | HVO_2302 | 2723 | 2914 | 4174 | 2956 | 3186 | 2508 | 2713 | 2608 |
3419 | HQ3347A | 2738 | 3007 | 2956 | 4131 | 3332 | 2517 | 2789 | 2684 |
3516 | Hbo1988 | 2807 | 3063 | 3186 | 3332 | 4181 | 2593 | 2838 | 2676 |
2890 | VNG1770 | 2461 | 2470 | 2508 | 2517 | 2593 | 3974 | 2677 | 2541 |
3260 | Hmu2260 | 2799 | 2682 | 2713 | 2789 | 2838 | 2677 | 4232 | 3082 |
3089 | Hut0240 | 2759 | 2484 | 2608 | 2684 | 2676 | 2541 | 3082 | 4326 |
586 symbols consensus -V--VNLRAYWRFLVVLRQFLPLIVAYARDRRRYLLFGGSRSVTAEMRRERAEILLDSLL #oth 11222311212113215441311443131123322211331624422143..54..22.1 NP1742A :-::-M:::::::V::AS:::::LF:::::KK:F:::::::QPS::T::R::QS:::::V hla0893 V:TL:::::::::F::M:R:S::::::W:::K::F::::G:E:D::TQ::::A::::I:: HVO_2302 V:TL:::::::::::::Y::F::::::T::K:K::::::G:R::T:::V:::DV::E::: HQ3347A :-::M:::::::::::I:::F:::I:::::K:K::F:::T:::N::TQTA::::::E::: Hbo1988 V:TL::::S:::::::VY::F:::::::::::T::::::::T:::::QSK:::::::::: VNG1770 :-::------------------------------------------::::::R::::A:: Hmu2260 :-:::::::::::V::V:H::::GLS:::::N:F::::R::D::P:Q::R::GR:::::: Hut0240 ::ES:S::S:R:::T::VE::::ALT:::::::F::::S::::SSAQ:H::::T::G::: consensus TLGPTFIKLGQLLSTRPDILPPEYIEELSSLQDDVPPAPWDEAKAVLEDELGPVDEAFDD #oth 1..........2......1..22.121135...1..1.1.22225.1.311..1114124 NP1742A R:::::::::::::::::V::::::::FER::::::::D:ER::::::SDI::IE:T:EE hla0893 :::::::::::I::::::::::A::DV:EG::::::::::E:S:I:::::::::::T::: HVO_2302 ::::::::::::::::::::::::::V:G:::::::A:::::S:::::A:::::E::::A HQ3347A ::::::::::::::::::V::A::::V:::::::::::::A:S:V:I:::::::::IY:: Hbo1988 ::::::::::::::::::::::Q::DV:::::::::::::E:T:Q:I:E:::::::V:ES VNG1770 ::::::::::::::::::V::T::::::AE:::R::::D:A::QR:I::::::::DV::A Hmu2260 ::::::::::::::::::V::::::D:FAQ:::R:::::::::RT::::::::::::::G Hut0240 :::::::::::M::::::::::::VT:F:K:::R::::D::D:RV:::A:::::::R:S: consensus FDREPISGASLGQVYTAEYDGDDVAVKVRRPGIESLVEADLRVIRWSLPILMRFVGQGRA #oth .2512..........3.421144....1...21.2..1....22..12.3232.213211 NP1742A ::T::::::::::::::RV::R:::::::::D:::::::::::::::::::::::D:A:S hla0893 :::::::::::::::::R:E:S:::::::::K::::::::::T::::I:LVRK:T:S::: HVO_2302 ::SD:::::::::::V:::E:EK:::::::::::D::::::::::::M:L::::I:E::: HQ3347A :::::::::::::::::T::D:P::::I::::::T::::::::V::::::VR::I::::: Hbo1988 ::ND:::::::::::::Q:::::::::::::::::::::::::::::::FI:::I::::: VNG1770 :N::S::::::::::::DV:DQQ:::::::::::::::::::A::::I::VV::::::Q: Hmu2260 :ED:A::::::::::R::V:::A::::I::::::D:::::::A:::::::::Y:::ET:S Hut0240 ::V:A::::::::::Y::I:::P:::::::::V:D::Q:::::L::I::V:LY::DDA:S consensus FSLENLADEFAKTIREEMDYNRERRMLEEIRENFADNDRIRIPEAVEERSGDRVLTMEYL #oth ....1.....32...1....51.222.31.23.133334211.524133.25.....1.2 NP1742A ::::T:::::ET::::::::::::::::::G::LEA:ENV:V:D:LP:Y:SQ:::::::V hla0893 ::::::::::::::::::::::::A::::::A::::E::::::T:F:AV::P:::::::I HVO_2302 ::::::::::::::::::::AE:AET:V::Q:::::D:TLV:::PIP::::::::::::: HQ3347A :::::::::::::::Q::::D::::I:QQ::S::RSV:D::::::I:S:::S:::::::: Hbo1988 :::::::::::::::Q::::S::::I::Q:QS::NG:GT::::KP::::::P:::::::: VNG1770 ::::::::::::::::::::S::G:::T:::A::::EPD:V::TVY::Y:S::::::Q:I Hmu2260 ::::T:::::S:::::::::G::AE::T:::G:::::::::::GV::TH:TN:::::::: Hut0240 ::::T:::::DQ:::Q::::K::A:::T:::::::GD:A::::PV::SH:TE:::::::V consensus PGTKINDVDELDEAGIDRTRLAETLQRVYLQMIIDDGVFHADPHPGNLAVQDDGTIIFYD #oth 2....122231145131.232122.133.1...12..11.........1.322.321... NP1742A G::::SKL:D::S::V:::E::R:::Q::::::V:::A::::::::::::K::::LV::: hla0893 :::::S:::A::D::H::NAI:::::D:::::::::::::::::::::::D:::AV:::: HVO_2302 :::::::I:A::DR:::::E::TN:::I:::::V::::::::::::::S:T:::R::::: HQ3347A ::::::NIE::::M:LN:::::::::E:::::::G:::::::::::::::TET::V:::: Hbo1988 :::::::LETI:ME:::::E::TR:::I::::::::::::::::::::::DEE:R::::: VNG1770 E::::S:::T:ERR:V::SQVS:::E:A::::::E:::::::::::::::::::S:V::: Hmu2260 ::::::::E::::LSV:::::::::::S:::::::::::::::::::::::S:::LV::: Hut0240 E:::::::A::::K:::::::::::E:A:F:::VE:::Y::::::::::::::::LV::: consensus FGMSGRVDPFIQDKIVDFYVAVANQDIDAILDALIEMGTLSPEADRQVMGDVMELAIADA #oth ...212.11.2.11.11..31..3..2.1...1.12......21..3..12..1...1.. NP1742A ::::::::::::E::I:::M:::R::T:::::T:::::::::D:::E::AN::::::::: hla0893 :::A::::::::E::::::::::R::::G:::T::A::::::::::E:::N::::::::: HVO_2302 :::H:E::::::E:::E::I::::::V:G:::T:::::::::NV:::::::::::::::: HQ3347A :::::T:G::::ER:I::::::::::::G:::::::::::::::::E:::N::Q:::::: Hbo1988 ::::::::::V:::::::::::::::::G:::::V:::::::::::R::::::::::::: VNG1770 ::::::::S:::::::E:::G::::::::::::::D::::::::::A::A:::::::Q:: Hmu2260 ::::::::::V::R:::::A:::S::::::::::::::::::::::::::E::::::::: Hut0240 ::::A:::S:L::R:I:::M:::E:::::::::::::::::::V:::::A:::::::::: consensus RGEDIEQYRVQQIIQQVEDTIYEFPLRLPRNLALVLRVATVVEGVCVTLDPEFDFISVAT #oth 1.121.1.111..232..1..........31........1.....1....11....21.. NP1742A :::::::::I:::::::::::::::::::P:::::::::::::::::::::D::::D::: hla0893 S:::::::Q:N:::E:::S::::::::::PD::::::::::::::::::::::::::T:: HVO_2302 ::D:::::::N::LE:::S::::::::::::::::::::G:::::::::::::::::::: HQ3347A :::::::::::::VD:::S::::::::::::::::::::::::::::::::::::::::: Hbo1988 ::::::::::::::E:::S:::::::::::::::::::::::::::::::Q::::::::: VNG1770 :::N::T::::::VGK:::::::::::::P::::::::::::::::::::::::::T::: Hmu2260 ::::L::::::::::::::::::::::::A:::::::::::::::::::::D::::T::: Hut0240 :::Q:::::::::::S:::::::::::::E:::::::::::::::A:::::D:::::::: consensus DYLREEGYYEESARQIAADRGQQVQDTAESLVRVPPKLERALDRIERDNLHVRVRLEDSN #oth 111421.13122224333132416132231322....1243..332.2123231322.54 NP1742A ::::D:::I:::::GYVE::VGEI::FG::M::::::::S:::DLD:G:VSLQ:SF::DE hla0893 E::K::::::QT::NL:EGA:::A:K:::A:FT::::ADDF:::AN:GD::ID:TID:GS HVO_2302 :::T::::R:::VQK:IEGV:::G:K::Q::F::::::::V:::AD::::TLN:::::NR HQ3347A ::IES::::::T::KLL::A:T:T::::RA::E:::::NGV:::::::::S:D:::Q:QS Hbo1988 :::::::::::T:KE:V::T:R:M:R:T:AMFT:::::D:V::SV::E::T:N:::::K: VNG1770 :::A:Q::R:::I::F::GTAEEF:AA:T:VL:::::::::::KV::ED:Y::AD::::: Hmu2260 E::::::HIAAG:K:Y:Q::AGE:R:A:::M::::::::S:::::::ED::::ADI:::D Hut0240 :F::::::L::::::FVS::VTE:R:AGR:A::::::::TT:::::::DFY::ADI:::D consensus NVLDRLARRLVYGLLLAVGVLSTAILYAF--SSVRAAAVAAALTAPVAIALYRSFRKRRG #oth 42213113.22214321524322331.232342342233223413233531121..3221 NP1742A SAF::::K:::F:G::SAL:IAA:V::::::ADLT::LI:LGGAV:::FL:W::::G::: hla0893 ::::K::M:IA:SV::::::::ST:::S::AQ:W:L:::VLL:A::L:V::::::::K:: HVO_2302 G:::K::K::I::IF:SF:FV::V:I::LNPE:LV:VGA:G:P::V::LL:W::::S::: HQ3347A ::I::::::I::::FV:::A:::::::::DQ:::LP:T:::V::L::I::::::::SK:: Hbo1988 ::::K::::I:::::::::::::::::::DQT::VP::::::::L:II:Q:::::::K:: VNG1770 R:I:A::::V:L::V::TS:PT::F::VT::AD:T:::ISG:F::A:GA:::KT::R:N: Hmu2260 G::E:MT:::IL:MI::S:T::::L:::A:::TDE:T:::GVG:LA::GVT:L:::RSK: Hut0240 DL::I::T::IL:MIA:G:LV::SV::SL:::T:::TLL::LV:TVSLF::::::::::S consensus LRTTPQFTRQNMRQRRGDD--------------------------- #oth 2222......311212343232333223312321212222222221 NP1742A ::GK:::::::L:K::::E::::::::::::::::::::::::::: hla0893 I:::::::::G:KK::D:-::::::::::::::::::::::::::: HVO_2302 I::::::::::LKE::RE-::::::::::::::::::::::::::: HQ3347A VQ:K::::::S::E:::R:::::::::::::::::::::::::::: Hbo1988 :K::::::::::::Q::E:::::::::::::::::::::::::::: VNG1770 :QAS:::::::L:E:D::GDDGGTALARSGSQIEADDAGTATNGD: Hmu2260 ::A:::::::S::::ESA:DAGYAS::SYGPDEE:::::::::::: Hut0240 I:A:::::::K::::ESNEGTESPPIGADGPIEEEDTKVAEEDRWT