|
Pairwise sequence scores | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1340 | NP3658A | hla0005 | HVO_0536 | Hbo4056 | rrnAC0890 | Hmu1575 | Hmu0268 | VNG2443 | HQ1586A | Hbo0517 | Hut2711 |
973 | NP3658A | 1354 | 878 | 792 | 826 | 913 | 890 | 830 | 783 | 858 | 913 | 840 |
1015 | hla0005 | 878 | 1346 | 1006 | 1067 | 890 | 874 | 971 | 896 | 865 | 937 | 840 |
970 | HVO_0536 | 792 | 1006 | 1321 | 1098 | 847 | 846 | 904 | 869 | 837 | 882 | 829 |
992 | Hbo4056 | 826 | 1067 | 1098 | 1362 | 867 | 866 | 926 | 878 | 839 | 918 | 838 |
1056 | rrnAC0890 | 913 | 890 | 847 | 867 | 1342 | 1031 | 893 | 901 | 914 | 985 | 906 |
1106 | Hmu1575 | 890 | 874 | 846 | 866 | 1031 | 1348 | 973 | 952 | 940 | 970 | 956 |
1084 | Hmu0268 | 830 | 971 | 904 | 926 | 893 | 973 | 1332 | 1025 | 926 | 939 | 972 |
1065 | VNG2443 | 783 | 896 | 869 | 878 | 901 | 952 | 1025 | 1360 | 972 | 1011 | 998 |
1064 | HQ1586A | 858 | 865 | 837 | 839 | 914 | 940 | 926 | 972 | 1357 | 1031 | 968 |
1133 | Hbo0517 | 913 | 937 | 882 | 918 | 985 | 970 | 939 | 1011 | 1031 | 1384 | 1025 |
1100 | Hut2711 | 840 | 840 | 829 | 838 | 906 | 956 | 972 | 998 | 968 | 1025 | 1362 |
186 symbols consensus --MSTQESVRKRAGEV-GSNALRLDAEKAEQIVDALNTDLAATYVLYHQLKKHHWNVEGA #oth 11.121342243213.122331121711211312...4...2211....22......... NP3658A :::::::T::RQ::S::EET::NI:P:::::L:::::::::::::::::I:::::::::: hla0005 ::::::KET:Q:::T::EE:::::ES::::::IE:::V:::DA:T:::::H::::::::: HVO_0536 ::::::K::L:E::S:::D:PV:::T::::::IE:::::::DA:::::::H::::::::: Hbo4056 :::::::T::RQE:T:::E:PV:::ED:V::::::::::::DA:::::::H::::::::: rrnAC0890 MT:A:::H::REF:N::EE:E::::K::S::VIN:::Q:::D::T::::V:::::::::: Hmu1575 ::::K:T::QQEF:T:::D:E:::ERD:S:::I::::S:::::::::::::::::::::: Hmu0268 ::::Q:Q:TL:Q::T:EA:E::::EQ::V::::::::A:::NV:::::::R::::::::: VNG2443 ::::::KNA:AT::::E::D:::M::DR:::C:::::A:::NV::::::::::::::::: HQ1586A ::::::QT::L::D::E::D:::I:S:R:S:L:::::::::::QT::::::::::::::: Hbo0517 :::::::N::::::::E::E:::I::DR:::::N:::::::::::::::::::::::::: Hut2711 ::::QS:H:L:T::::E::DG::M::DR::E:::::::::::::::::::R::::::::: consensus EFRDLHLFLGEAAENAEAAADELAERAQALGGVPHASGAALEEHAPVEPEDEDVYDIRTS #oth .1112.3112111232.23..12...3.21..2.311451333412113.221....... NP3658A ::L:V:EY:::V:ADL::D::::::::::I::::L:G::TF:::::ID::GD:::::::: hla0005 ::::V:V::Q:VY:DV::::::V:::L::::::::::LTT:A:N:T:::::::::::::: HVO_0536 :HLRI:E::Q::Y:EV:E::::I:::L:SI:::::::MP::S:A:T:::::::::::::: Hbo4056 :H::I:I::Q::Y:DV:D:::DV:::I:T::::::::MT::S:A:T::A::::::::::: rrnAC0890 :::::::::::::::::E::::::::::::::T:IS::K:Q::::S::::GQ:::::::: Hmu1575 ::::::::::D::A::::::::::::::::::T:V:GP:::AD::::DS::::::::::: Hmu0268 ::::::::::::::E:::::::::::V::::::::::A:T::SE:T:::::::::::::: VNG2443 ::::::::::::::T::EV:::::::V::::::::::PET:QAE:S:DV::::::::::: HQ1586A :::::::::::::DE::EF:::::::::::::A:VS:PS:IS:RS:::::N::::::::: Hbo0517 ::::::::FE::Y::::EF:::::::V:::::::I:G:K:::::::::::G::::::::: Hut2711 ::::::::::D:::::::F:::::::V::::::::::::T::AES:::::::N::::::: consensus LANDLEMYGDIIESLREHIELAENLGDHATAEMLREQLVEVEEDAHHIEHYLEDDTLVTE #oth .4..3232.2..133.2.21.344.1.2113321.141443.221.111....1....34 NP3658A :E::I:AF:V::D:::D:::::ND:::YT:E:L::DV:AG:::H:::L::::::::::LD hla0005 :::::::M::::::Y::::::::G:::Y::::::::::EGI:GH::::::::::::::V: HVO_0536 :S::::::::::::Y:::::::AG::::T::H::::::I:I::H::V:D:::::::::Q- Hbo4056 :S::::::::::::Y::::::I:G:::Y::G:::::::MDI::H::V:D:::::::::L: rrnAC0890 :E::::::::::::::D::D:::::::::::QI:::II:QT:::::::::::::::::LD Hmu1575 :::::::::E::::::D:V:::T::::::::QI:::I:::T::::::::::::::::::: Hmu0268 ::::VDV::E::::A:S::::T:G:::::S:Q::::::::L:DAV::::::::::::::: VNG2443 ::::MAI::::::AT:::T::::::::::::H::::G:I:L:D::::::::::::::::Q HQ1586A :G::M::::::::T::D::::::R:N:PT::H::::N:I:::DA::::::::::::::V: Hbo0517 :R::M::::::::N::::V:::DS::::::SY::::N:ED::D::::::::::::::::: Hut2711 :E:::::::::::T::::V::FD::::PT:::II::NI:T:::::::::::::G:::::A consensus SAMQ-- #oth 414411 NP3658A ::TK:: hla0005 ::TN:: HVO_0536 ----:: Hbo4056 ::TK:: rrnAC0890 ----:: Hmu1575 N::::: Hmu0268 :::::: VNG2443 G:LE:: HQ1586A :::::: Hbo0517 ::VNNE Hut2711 D::E::