|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3633 | hla2590 | NP2314A | VNG0648 | HQ1648A | HVO_0988 | Hbo0453 | Hut1382 | rrnAC1458 | Hmu1940 |
2723 | hla2590 | 3635 | 2141 | 2008 | 2450 | 2496 | 2444 | 2182 | 2168 | 2228 |
2535 | NP2314A | 2141 | 3592 | 2000 | 2213 | 2327 | 2264 | 2289 | 2229 | 2322 |
2222 | VNG0648 | 2008 | 2000 | 2940 | 2048 | 2140 | 2029 | 1961 | 1900 | 1964 |
2907 | HQ1648A | 2450 | 2213 | 2048 | 3723 | 2794 | 2885 | 2221 | 2252 | 2209 |
3033 | HVO_0988 | 2496 | 2327 | 2140 | 2794 | 3699 | 2904 | 2359 | 2354 | 2400 |
3016 | Hbo0453 | 2444 | 2264 | 2029 | 2885 | 2904 | 3688 | 2306 | 2346 | 2323 |
2693 | Hut1382 | 2182 | 2289 | 1961 | 2221 | 2359 | 2306 | 3617 | 2411 | 2469 |
2650 | rrnAC1458 | 2168 | 2229 | 1900 | 2252 | 2354 | 2346 | 2411 | 3731 | 2581 |
2708 | Hmu1940 | 2228 | 2322 | 1964 | 2209 | 2400 | 2323 | 2469 | 2581 | 3590 |
546 symbols consensus ----------MIAL-------PQWAALAPAILLALTGLALLLIDSI--DPDSTNNGLLAG #oth 111111113454611222111253533414452342324122313111533542562233 hla2590 :::::::::MVNT::::::::::M:::L:VF:::F:::::::V:T:::S::ARS:TSM:V NP2314A :::::::::::V--:::::::SD:LL:::PAAFITAA:::FVV:A:::SS:E:SGW::S: VNG0648 ::::::::::----:::::::-------------------------::------------ HQ1648A MPASTFSMIDI:I:QSQSGLPSGILV:T:V::::A:::I:::::T:::FTEVSSDS:::: HVO_0988 :::::::::::TP:QSA:::::::F:T::::V::::::::::::T::::::::::::::: Hbo0453 :::::::MFEP:::QAAP::::E:T:V::::I:G::::L::V::::::NTGEE:SA:::S Hut1382 ::::::::MAA:E:::::::::::::::::LV:G::A:::FV::::EPE::T::T:::T: rrnAC1458 :::::::::::V::::::::::D:M:::::LS:::AS:V:::A:::::::::::T::::: Hmu1940 :::::::::::VQ:::::::::T:T::S:TL::G::AIV:::V:::::::::S::E:::: consensus VSTLGSLAAFAIAGWFLVAGTGQPATGGA-ITLFGDALVVDGMSLFFTLIFASVTALVVV #oth 345413232425422234422154443121241244223113231215422321322143 hla2590 :GA::::::L:ASV:LV:S:::SAD:::::::::AE:IK::T:A::::A::::::::::: NP2314A :T:A:G:::A::::VL:LSE:---:A::-:VE:::GQ::::::::L::F::G::::::A: VNG0648 -----------------------------:-----------------------------M HQ1648A ::AI:::L::G:T::::IS:L:::Q::::::::Y::::::::L::::I:::TI::TM:A: HVO_0988 TA:::A:::GG::::::IG:::MES::::::S:Y:::::::::::::::::T::A:M:S: Hbo0453 I::V:A:F:::V::::::E::::SQ::::::::Y:::::::::::::::::TI:A:M:CI Hut1382 :GLA:A:::L:FNV::::::::N::A---::E::::Q:L::::T:::GT:V:::L::::L rrnAC1458 I:V::::LS:GF::::IT::::MADNT:-:VA::NSQ::::Q:A:::MA:VG:::T:::L Hmu1940 :AG:::I::A:TSV::I:::::L::EN:EL:S::D:Q::::Q:A:::SFLV:::LT:::: consensus ASYDYIADQQYQAEFYSLVLLAATGMTLMAAANSLATAFVSLELASLPSYALVAFLKDNR #oth 112..553564412112.33211...2.1222.11111121..11.....1..23..512 hla2590 :AH::FH:HTNP:A:::::VF:::::A:L:::::::VV::A::MV:::::V:::Y::RD: NP2314A ::L:::R:LPHK::Y:L:IS::::::S:::S::::VVV:I::::::::::::::Y::N:: VNG0648 ::H::LD:ADSV::::A:T::::::::::::::::V:V:I::::::::::V::SY::RD: HQ1648A ::::::SA:::K::::::I:F:::::A::SMS:::::::::::::::::::::S::::DQ HVO_0988 :::::L::::::G:::A:::F::::::::GMS:::::V:::::::::::::::::::KD: Hbo0453 ::L::V:E:R::::::::::F:T::::::SMS:::::::::::::::::::::G:::::K Hut1382 G::::YTGVP:R::YF::LF::::::::LG:V::F:::LLA:::::::::::::S::::K rrnAC1458 ::::::TEHS:::::FA::::S::::S:LS::::::::::A:::V::::::::::::E:K Hmu1940 :::::M::KAR::KY:::TVM:::::S:LGS::G::V:::A:::::::::::::I::T:K consensus GSVEAGLKYFLIGALSSAVFLYGISLVYAATGSLLLDDVAAALGEGT------------- #oth 1.1.111..1.1..1..11221....1112..2251531.63234432111111111111 hla2590 ::::::M:::::::::::I::F::::::::::::::G:::EGI:SLD::::::::::::: NP2314A :::::::::::::::::GIM::::::I::T:::F::G:I::SV::AAS:::::::::::: VNG0648 ::I::::::::::::::G:M::::::::::::VMG:PAI:DTITA::::::::::::::: HQ1648A S:I::::::L::::::::::VF::::::::::::::S:I:KSVA:T-::::::::::::: HVO_0988 ::I:::::::::::::::::AF:::::F:V::::V:PEI::T:A:::::::::::::::: Hbo0453 :::::A::::::::V:::::AF:::::::V::::::A:::S:::GS:::::::::::::: Hut1382 ::::G::::::V::::::ILV:::::::::::H:AFTE::G:::DA-::::::::::::: rrnAC1458 ::::::::::::::V::::LA:::::::::::V:RF:G::T:ISS::IQTISEGSIQAQS Hmu1940 :::::A:::::V:::::G::::::::::G:::::QF:A:::::TD:-::::::::::::: consensus ----ELAGVLGIGILMIAGGFAFKTASVPFHFWAPEAYEGAPAPISAFLSSASKAAGFVV #oth 1111544112.2.21.231.1..............1......1.11..1.........12 hla2590 ::::G::::A:L::V::L::V:::::::::::::::::::::::V::::::::::::::: NP2314A ::::THP::F:V:L::VI:::::::::::::::::D::::::::VA:::::::::::::I VNG0648 ::::DFV::::L::V:LVA:::::::::::::::::::::::::V:::I:::::::::A: HQ1648A ::::::I:::::::::::::::::::::::::::::::::::::::::::::::::::A: HVO_0988 ::::::V::::L:V::::::::::::::::::::::::::::::V:::::::::::::A: Hbo0453 :::::MV::::::V:::L::::::::::::::::::::::::::::::::::::::::AI Hut1382 ::::-P::I::V:VV:V:::V:::::::::::::::::::::T::::::::::::::::L rrnAC1458 GDPAVPMAI::V:::::I::V::::::::::::::::::::::::::::::::::::::L Hmu1940 ::::VP::I::::V:::V::V::::::::::::::::::::::::::::::::::::::L consensus AFRVFTEAFPLDALLA----GVDWVLAFQVLAVVTMTLGNFAAATQENVKRMLAYSSIGH #oth 1..21421114473443111411.212.22..21..22......1.33.........1.. hla2590 :::L::::::VG:S::A::::I::::::G:::A:::::::::::V::E:::::::::::: NP2314A ::::LLVG::IQEVA:::::T:::::L::I:::::::V::::::::S::::::::::::: VNG0648 L:::::T:::::VIAGT:::VI::S:L:AA:::::::::::::::::::::::::::V:: HQ1648A :::::V:::::GS:PV:::::::::::::::::A:::::::::::::T:::::::::::: HVO_0988 ::::::V::::ETVTEIGGGS:::S:L:A:::::::::::::::::N::::::::::::: Hbo0453 :::::F:::::AK:PT:::::::::::::::::::::::::::::::::::::::::::: Hut1382 :::L::T:::Y:LISG::::TI::L:L::I:::A::V:::::::::RS:::::::::::: rrnAC1458 :::A:AV:::IGD:::AGG:AIN::M:::I::IA::FI:::::::::T:::::::::V:: Hmu1940 :::::AT:LMG::V::::::V:::::V:::::I:::FV:::::::::::::::::::V:: consensus AGYVLIGLAALTAGGG-AANALVLGASMAHLLVYGFMNTGAFLFIALAEYWGVGRTFEDY #oth ...1..11..22761114542511112.3..2..........1.1.11.3.12..1.... hla2590 :::A:::V:::SQ-:::S::GA:M::A:::::::::::::::::V:M::R:::::::::: NP2314A ::::::::::::NV::PT:E:T::::::L:::::::::::::::V:MV:H:D:::::::: VNG0648 :::::::::::QS:::::Q:S:::::::M:::::::::::::::V::::::D:::::::: HQ1648A :::A:::::::S:::-:-P:GD:::::::::F:::::::::::::::V:H:::::::::: HVO_0988 :::A::::::I:TD::::::GD:::::::::F::::::::::::::MV:K::L::::::: Hbo0453 :::A::::::I::N:-:-P::N:::::::::M:::::::::::::::::H:::::::::: Hut1382 ::::::S:::::PQ--::DGS:::::G:L:::::::::::::M:V::::::D:::::::: rrnAC1458 ::::::::::VSGS:-:EGLS:S:S:G:S::::::::::::::::::::::::::R:::: Hmu1940 ::::::::::::--:::SSD:Y:::SG:M::::::::::::::::::V:::DI::::::: consensus NGLARRAPVACVAMTVFLFSLAGLPPGGGFFSKYVLFMAAINSGFWWLAAVGAVNSALSL #oth 1.1333..3.33..21.1.......211..2..14.2621254.322.1232111.11.. hla2590 A:::::::::ST::A::M::::::::FA::::::F:::G::DN::L::::F:::::VV:: NP2314A :::::E::L::::::I:::::::::V::::L:::Y:VVG:VGT:V::::V:L:I:::::: VNG0648 :::SK::::::::::::M:::::::V:A::L::::::AG:VQ:::A:::GIA:I:::::: HQ1648A :::VT:::I:V:::::::::::::::F:::V:::A::YS::E:::::::::::::::::: HVO_0988 ::I:SK::I:AS:::::M::::::::F:::::::A::ES::G:::::::::::::::::: Hbo0453 :::GSK::M:::::S::M::::::::F:::::::::::S::E:::::::::::::::::: Hut1382 :::::E::::A::::I:::::::::V:A::L::::::G::V:A:V::::::::IA::::: rrnAC1458 :::GKE:::::A:::::::::::::I:::::::FY::S:TL:V:A:S:::ALII:::::: Hmu1940 ::::TQ::L::A:::::::::::::I:::::::FN:L::TVR::T:F:G:ALI::::::: consensus FYYSRVVKAMWIEEP--SQSLE-IDSYPIGLYTAVIFAAVGTVLLLPGFGPVIETAQTAA #oth 1..1..11.211121113642321333.31..2.133.132.22.1111542423.441. hla2590 Y::::::::LF:DD:AS:S::DV::VR:T:::A:::::::A:::::::::::::::EA:: NP2314A Y::::::::::::S:::AE::T::ER::TA::A::MA::AV:::::::LFVFDGA:FD:: VNG0648 :::::::::L:::D:::RDD:S:LSGQ:T:::V::LA:::::IA::VA:D::AQ::TH:: HQ1648A ::::::IR:::::S:::T:D:SAL::R:::::A::L::G:::LI:::A::::V:::::V: HVO_0988 ::::::::::::::::::KP::::G:Q:V:::V:IV:::::::::::::Q::::::::V: Hbo0453 :::::::::I:::DA:::P:::::G:K:V:::::::::::::L::::::R::::::::V: Hut1382 :::::::::L:F:::::T:AF:::::::::::::I:V:::V::::::A::FPS:E:IA:: rrnAC1458 :::::::::::::::::TG:RT::E:::M::::::VG::IV::::V:::NR:S:I:FQ:: Hmu1940 Y::T:::::::::::::ASG::::ER:::::::::LV::LV::::::::DA:SQ::E::: consensus AALF-- #oth 52.311 hla2590 S::::: NP2314A :::L:: VNG0648 DV::AG HQ1648A :::::: HVO_0988 :::::: Hbo0453 T::::: Hut1382 G::V:: rrnAC1458 QL:-:: Hmu1940 SL:-::