|
Pairwise sequence scores | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1710 | VNG0761 | Hut0977 | hla1558 | HQ2488A | HVO_1177 | Hbo0381 | NP4100A | rrnAC0822 | Hmu1531 | HVO_0286 | Hbo1197 | rrnAC2608 | Hmu2932 | HQ2043A | NP5148A | hla1328 |
1103 | VNG0761 | 1722 | 966 | 926 | 886 | 989 | 940 | 952 | 964 | 964 | 698 | 703 | 755 | 777 | 741 | 719 | 720 |
1230 | Hut0977 | 966 | 1735 | 996 | 1029 | 1048 | 1006 | 1065 | 1032 | 1050 | 735 | 769 | 709 | 754 | 800 | 813 | 821 |
1177 | hla1558 | 926 | 996 | 1720 | 1056 | 1080 | 1056 | 1049 | 1003 | 1007 | 688 | 707 | 694 | 757 | 759 | 817 | 748 |
1178 | HQ2488A | 886 | 1029 | 1056 | 1751 | 1115 | 1139 | 1059 | 1000 | 989 | 659 | 687 | 699 | 738 | 724 | 699 | 721 |
1239 | HVO_1177 | 989 | 1048 | 1080 | 1115 | 1713 | 1191 | 1113 | 1116 | 1132 | 757 | 745 | 784 | 739 | 765 | 737 | 866 |
1237 | Hbo0381 | 940 | 1006 | 1056 | 1139 | 1191 | 1717 | 1070 | 1028 | 1072 | 701 | 757 | 736 | 765 | 784 | 753 | 774 |
1236 | NP4100A | 952 | 1065 | 1049 | 1059 | 1113 | 1070 | 1723 | 1066 | 1117 | 760 | 784 | 711 | 798 | 767 | 762 | 769 |
1228 | rrnAC0822 | 964 | 1032 | 1003 | 1000 | 1116 | 1028 | 1066 | 1738 | 1392 | 706 | 709 | 761 | 745 | 774 | 764 | 793 |
1233 | Hmu1531 | 964 | 1050 | 1007 | 989 | 1132 | 1072 | 1117 | 1392 | 1747 | 706 | 721 | 762 | 752 | 739 | 785 | 789 |
924 | HVO_0286 | 698 | 735 | 688 | 659 | 757 | 701 | 760 | 706 | 706 | 2060 | 1140 | 869 | 841 | 862 | 880 | 857 |
973 | Hbo1197 | 703 | 769 | 707 | 687 | 745 | 757 | 784 | 709 | 721 | 1140 | 1866 | 845 | 893 | 903 | 886 | 905 |
876 | rrnAC2608 | 755 | 709 | 694 | 699 | 784 | 736 | 711 | 761 | 762 | 869 | 845 | 1827 | 971 | 866 | 853 | 923 |
968 | Hmu2932 | 777 | 754 | 757 | 738 | 739 | 765 | 798 | 745 | 752 | 841 | 893 | 971 | 1838 | 930 | 851 | 978 |
945 | HQ2043A | 741 | 800 | 759 | 724 | 765 | 784 | 767 | 774 | 739 | 862 | 903 | 866 | 930 | 1864 | 1027 | 1169 |
949 | NP5148A | 719 | 813 | 817 | 699 | 737 | 753 | 762 | 764 | 785 | 880 | 886 | 853 | 851 | 1027 | 1814 | 1089 |
982 | hla1328 | 720 | 821 | 748 | 721 | 866 | 774 | 769 | 793 | 789 | 857 | 905 | 923 | 978 | 1169 | 1089 | 1925 |
288 symbols consensus --------MRVALVTVGDELLAGDTVNTNAAWLARRLTERGVTVARVTTVPDRVADIARV #oth 11111111.5212211.1.1.2.113....4..242.323.1415.3321..4634.246 VNG0761 :::::::::Q:::::::::::::::::::::::GQQ:H:::A::::TIVI::E::T:QAD Hut0977 :::::::::::G:I::::::::::::::::::::EQ::D:::::G:I:V::::T::::ET hla1558 :::::::::DA:I::::::::V:::E::::T::CG::AD:::::R:::V:::E::E:::: HQ2488A ::::::::::::V::::::I:::::I:::::::CEQ::DH::::E:I:::::T:S::::: HVO_1177 :::::::::Q::V::::::::::::::::::::CEE::A:::S:E::::::::::::::: Hbo0381 ::::::::::I:V:::::::::::::::::S:::E:::A:::R:E::::::::::E:::: NP4100A :::::::::N::::S::::::S:::::::::::GE::::::AS:::::V::::::::::: rrnAC0822 ::::::::::::V::::::::S:K:::::::::GQQ:A::::::G:T:V:::EIS::::: Hmu1531 :::::::::H:::::::::::::::::::::::G:Q:AD:::S:E:T:V::::L:::::: HVO_0286 :::::::::QI:IL:::N::::::IE::::T::::::::G:A::::IQ::::DHEV::ET Hbo1197 :::::::::N::I::::N::::::IE::::T::::E::::::K::::I:I::EETT::ET rrnAC2608 :::::::::E:::L:::::::::::E::::S::G:Q::AA:AS:T::L:I::DE:V::DA Hmu2932 :::::::::Q:::I:::::I:S:::E::::G::::::::::::I::ML:I::DR:L:::H HQ2043A ::::::::::::VL:I:::::::::T::::T:::Q:::::::::R:IL::::EHSL:RSR NP5148A :::::::::DA::::::::::::::E::::T:::G::SD:::A:K:TLV:::VR:V::DA hla1328 VRRPYDRA:E:::I::::::::::::::::N:::AE:SD:::A:K:ILS:::DR:V::EC consensus VNEYHAEFDAVIVTGGLGPTHDDVTMEAVAAAFDRELVENEAALAWLEEHGGYAAEDLP- #oth .4334562...21...2.4.1..3.4321.412115345645263625467537333543 VNG0761 :AALSERY::::::::V:::::::::D:::S::::::T:HAD:V:YFQR:DT:S:A::T: Hut0977 :DA:RTQY:::LL:::I:::::::::::::E:::VA:::DQ:::D::A:NRD::R:::A: hla1558 ::::Y::Y:::L:::::::::::::::::::::G:D::A:DQ:AD::A:R-::S:D::V: HQ2488A :::::::C:::::::::::::::::::GI:::VG:SVEPHD::KE::SAEK:::SD::A: HVO_1177 :::::::Y:::V:::::::::::::::S:::::G:S:ER:AD:EE:::TN:::S:A::V: Hbo0381 ::::R::Y:::::::::::::::L::AG::::VG:::::H::::E::T:::::::AE:S: NP4100A :::HA:DY::::::::I::::::K:::G::::VG:S:SR:::::E:::SA::::R:::T: rrnAC0822 :::::::::::::::::::::::K:I:::::::G:DV::S:D:I:::::::::TRD::T: Hmu1531 :::::::Y:::V:::::::::::K:I:G:::::G:DV::S:E::S::::::::ERA::T: HVO_0286 :ADWA:A::::L::::::G:P::I:::::::GL::AF:V::E:A:QV:STIAAIL:RR:D Hbo1197 :G:WSMS::::V::::::G:P::L::PG:::GL::::AVDPV:A:DV:ATIDRIL:RK:D rrnAC2608 :AR::DA:::::::::I:G:P::I:KA:::R::G:D::VPDDVR:H::AKAERF:D:N:K Hmu2932 :R:WADA:::::::::::D:P::::L::::D:::::MTVQP:VRERV::KAREYR:EN:E HQ2043A :R::SGN:::::::::I:S:P::::VD:::D::::N::IS:Q:R:DVI:TLEALSDTV:: NP5148A :GR:SDA::::L::::::R:P::::V::::D::::G::VD:V:::DV:RTLEAI:GEY:: hla1328 :RA:ADA:::::::::::G:P::::L::::D:::::::PTDLTREAV:RRLAEIR:R::D consensus -----------EGTAALPAGARPLPNEEGVAPGCVVENVYVLPGVPAEMKAMFESVADEF #oth 32223353236333273.22334161641221.143442.12..2.4.13411381243. VNG0761 :::::::::::T::TH::::::L:E:PR:::::AA:N:::::::::D:::G:::T::::: Hut0977 :::::::::::D:::LI:::::MI::R::::::::LA::::::::::::Q:::DV::TD: hla1558 :::::::::::AE:TH:::DC:::A::A:::::A:::S:::::::::::E::::::VE:: HQ2488A :::::::::::D::T::::R::M::::V:::::A:::SI:AF:::::::Q:::::::A:: HVO_1177 ::::::::::::::TD::::S:M:::D::::::A::GS::::::::G::::::AR::::: Hbo0381 ::::::::::::::TD:::R::M::::V:::::A:::DI:::::::E:::::::RIES:: NP4100A ::::::::::::::TL:::D:E::H:T:::::::K:::::::::::::::::::::::D: rrnAC0822 :::::::::::D::GEV:E:S:V:::H::::::::::SC:::::::G:::R:::E::E:: Hmu1531 :::::::::::D::GHV:E:::V:::H:::::::I:::C:::::::::::R:::EIE:A: HVO_0286 I::::DFDLEP:WY:SM::D:EV::::::L::::RAG:::::::I:D:::P:::GI:ER: Hbo1197 I::::EFDLKV:WY:SM::::T:I::P::L:::::A::::::::I:E::R:V:DN:::D: rrnAC2608 MVDRYDMDLDLDAW:SV:E:GQA:LTD:SF:A:::IDR::::::I:E:L:::Y:TI:::: Hmu2932 RYEEHDFDLDF:E::::::D::::QTAASFN::::::::::F::F:E:LQ:::D:::::: HQ2043A :::::NIDVDIDAE:TI:ED::::L:T::L::::::::::::::I:S:L:T::NKI:E:: NP5148A :::::DLEVDAAAE:R::R:S:::I:HA:LS:::::D:::::::I:S::ER:::L::E:: hla1328 ::::SDVNVDV:AE::V:E:S:::L:DS:L:::::::G:::M::I:E:L::::A:::::: consensus AGEQT-TETVYTDEPESALLDRLAAVQERFDVTVGSYP---GEHVRVKLTATDADAVDAA #oth 6.2663456473631.253466265233514.41.1..435236322235352444264. VNG0761 T:::VY::E:SV:A:::::I:TI::L::AY::::::::::::DR::::IQHS:::T:R:: Hut0977 T:::QHI:V:HV::::::::::IETLGD:::::::::::::::I::L:ISS::R:::ER: hla1558 E:TP:H:VV:DV:::::E::E:FTEL::T::::::::::::::S::::I::AA::EAER: HQ2488A S::::V::I:AI::Y::E:I::I:DLR:Q:A:::::::::::DC::::::S::PE::A:: HVO_1177 :::R:HVRF:H:S::::S:IE:FE:::SA:::::::::::::D:::I::AGA:EET:ES: Hbo0381 N::T:Y::::R:V::::E:VG::HD:::M:::::::::::::DD::L::::N:ESELRD: NP4100A D::PPHVGY:AVN::::Q:V:::QEL::::A:::::::::::::::::IES:::A::N:: rrnAC0822 ::::RYVR::DAA:::::::::::E:::Q:P:K::::::::::::T:RFEG:EEEL:EE: Hmu1531 D:DGRHVTV:E:::::::::::::::::::P:K::::::::::R:S::FEG::REL:QE: HVO_0286 ::DVE:SREC:A:A::G:VARE:GV:A:::G:G:::::N:S:GPT:::::GG:PA:L:D: Hbo1197 G:TVA::T:F::P:::G:MAEP::T:ATE:G:R:::::NRN:ART:::::::::AVL:E: rrnAC2608 D:DR:::::IH:PA::G::VTHIT:AR:Q:E:A:::::RKDDAPG:::I:GD:PAT:AD: Hmu2932 G:DAV:A:S:P:VT::G::K:V::G:R:::::A:::::AHGDADG:::VSG:::QE:A:: HQ2043A T::AV:SSVL::VK::ANIVSA:KT:G:E::::I:C::DRNAG:N:I:V::::GETLTS: NP5148A N:DTE:SRYL::E:::AN:::::ED:RD::G:A::C::DREAG:N:LQ:K:::P::L:D: hla1328 ::DRR:SRFL::V::::DIVPA:E:AG:Q:::AI:C::DREA::N:L:V::::E::L:E: consensus AAWLRER--VELVDTE-------------------------------- #oth 46.275312445657475543232212211111111111111111111 VNG0761 :D:F:D::::TA:SR::::::::::::::::::::::::::::::::: Hut0977 T:::::::::::AAA:ES:::::::::::::::::::::::::::::: hla1558 :E:V:::::S::::S:N::::::::::::::::::::::::::::::: HQ2488A RR::TA::::S:A::DDETA:::::::::::::::::::::::::::: HVO_1177 ::::EA::::D:YEE-:::::::::::::::::::::::::::::::: Hbo0381 :G::E::::::IA:EAK::::::::::::::::::::::::::::::: NP4100A M:::QD:::A:VEESD:::::::::::::::::::::::::::::::: rrnAC0822 :::FS::::::SPTA::::::::::::::::::::::::::::::::: Hmu1531 :::FEA::::DS::D-:::::::::::::::::::::::::::::::: HVO_0286 M::F:SNAT:D:YES:AAVETAREAEAGGEERSQIGRDDGRLGSRDGE Hbo1197 SS::V:NAG:::TE:DGKKTDG:::::::::::::::::::::::::: rrnAC2608 :::::D:::I:TE---:::::::::::::::::::::::::::::::: Hmu2932 :E:VAQ::::DSPE--:::::::::::::::::::::::::::::::: HQ2043A TT::QNQ::IDAS::PVERDWGENVESD:::::::::::::::::::: NP5148A :S::ADT::LA:::PDDAA::::::::::::::::::::::::::::: hla1328 ::::LAN:::DASE:PVRRDWGSE::::::::::::::::::::::::