|
Pairwise sequence scores | |||||||||
---|---|---|---|---|---|---|---|---|---|
Consensus score | 4688 | HQ2528A | NP4200A | hla1717 | VNG1406 | rrnAC0181 | Hmu0716 | HVO_1723 | Hbo3098 |
3524 | HQ2528A | 5231 | 2617 | 3150 | 1674 | 2394 | 2727 | 3194 | 3334 |
3145 | NP4200A | 2617 | 4727 | 2808 | 1642 | 2455 | 2824 | 2688 | 2744 |
3658 | hla1717 | 3150 | 2808 | 5552 | 1625 | 2416 | 2833 | 3321 | 3268 |
1877 | VNG1406 | 1674 | 1642 | 1625 | 2472 | 1693 | 1762 | 1700 | 1765 |
2882 | rrnAC0181 | 2394 | 2455 | 2416 | 1693 | 3584 | 2783 | 2455 | 2584 |
3468 | Hmu0716 | 2727 | 2824 | 2833 | 1762 | 2783 | 4789 | 2934 | 3056 |
3797 | HVO_1723 | 3194 | 2688 | 3321 | 1700 | 2455 | 2934 | 5310 | 3615 |
3866 | Hbo3098 | 3334 | 2744 | 3268 | 1765 | 2584 | 3056 | 3615 | 4901 |
829 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 HQ2528A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP4200A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla1717 VSRSSAVRPVVAGSGRRTRSLAATVTVAPVNSRGRSGLHHPVADAIHFPLADAIHFPLAD VNG1406 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0181 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0716 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1723 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo3098 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus -----------MTTDD-DDASADDAGDID------------------------------- #oth 111111222222444264445444253333111111111113122344443224443333 HQ2528A ::::::::::::GKKSKS:::VES:KS::T:::::::::::::::QTETAVESNDHPRSN NP4200A ::::::MSNRCVV:A:P:I::::ADA:::::::::::::::::::::::::::::::::: hla1717 AIHFPLATEPEVM:::SG:PA:G::S:S:T:::::::::::GDAPDSAAGNDSRADPDSQ VNG1406 :::::::::::-----:------------::::::::::::::::::::::::::::::: rrnAC0181 :::::::::::-----:------------::::::::::::::::::::::::::::::: Hmu0716 :::::::::::V::E:DAE:GG:::::QP::::::::::::::::::::::::::::::: HVO_1723 :::::::::::::AE:E:QSPP:GD::::GAGASRDVLDRLADVTEVSDVPDASTVDADQ Hbo3098 :::::::::::::E::AG:TDGPSDTLSSE:::::::::::SD::ELTSEPDAVGQTDIP consensus -----E-LSLADFYDALEAEGRPVVTAQQVARRLGLTQAAAREALAALADDGEVQRLDVE #oth 433332522445222233233212412444234325333525231431445353324413 HQ2528A KTETSDR::TDQV::IF::AR::::::STI::Y:SRN::TIT:Q:ST:I:S:VIDNIT:D NP4200A :::::-:--IET:::::A:AR::::::EDL:TTA:C:VEV:N::::::::ES:::::::D hla1717 DNDAA:E:::DR:HE:::::E:::A::SE::::::T::::::D:::::V:R:D:D::::: VNG1406 :::::-:----------------------------------------------------- rrnAC0181 :::::-:----------------------------------------------------- Hmu0716 ::::::TVTV::V:::ID:V:K:HL:PAE::AKT:::ADE:::::ER:GE:A:LE:Q::S HVO_1723 PSEIADGV:::A::E:::S::::::::::::::::VS::D:MDG:D:::GA:R:::VN:: Hbo3098 ANVAV:N:::S:::::::::::::M::::TG:::::S::::S:::DR::R::TL::VE:: consensus DDPVVYYPTDW-RLADRERVVLFPDRREIVVDNPTQYTRARLSQFAHLVDTTG------- #oth 433313214423544421123311412221125231211131311111322213133111 HQ2528A :::::::::SLSEMST:::I:V::::::::::::::::::Q:T::::::::::ERQPVDQ NP4200A :ESA:WA:ER-:TAGAT:::TV::E::D::::E:E:::::L:T:::::EE:N-::::::: hla1717 S::I:F:::::G:::T:::::A::S:::::::R:::F::::::::::::::::T:EP::: VNG1406 -----------:-----------------------------------------::::::: rrnAC0181 -----------:-----------------------------------------::::::: Hmu0716 GAEA::::P:LDAVT:::::I:::::H:V::EHAD:F:::Q::::::::::N-::::::: HVO_1723 T::::W:::E:GD::S::::::::K:::::::::::::::::::::::A::::DREG::: Hbo3098 T:::::::AE:D:::::::I::::E:::::::Q:::::::::A:::::::S::DRNA::: consensus ---------------------------------------------RTRGYLYRIRQEDVW #oth 111111111111111111111111111111111111111111111453122142121121 HQ2528A HGPQVSEEMIDQDSISITDPEKTTIVEDEDEDAEADADTRAPRQPQS::::::V::::I: NP4200A :::::::::::::::::::::::::::::::::::::::::::::SES::I:AV:E::I: hla1717 :::::::::::::::::::::::::::::::::::::::::::::G:::::::::::::: VNG1406 :::::::::::::::::::::::::::::::::::::::::::::--------------- rrnAC0181 :::::::::::::::::::::::::::::::::::::::::::::--------------- Hmu0716 ::::::::::::::::::::::::::::::::::::::::::::::AG:AI:E::E:::: HVO_1723 ::::::::::::::::::::::::::::::::::::::::::::::G::::::::::::: Hbo3098 :::::::::::::::::::::::::::::::::::::::::::::G::::::K::::::: consensus QAPFDDLDELLAMIRSVLPRRSPHLEEWVEDQWERAHKFRLYTHEDGYVVLEAASESLMG #oth 311222334122432222232433115123511311331115212221211213332121 HQ2528A :::::::GS:ISV:::A::::V:G::S:I:T::K::NR:::F::N::::::::::::::: NP4200A N::YES:P::::T:::A:GGHHEA::S:::G::::::::::T:::::::::::K:AD:L: hla1717 A:::E:A:G:I:SL:::::::FD:::D:IR:::R:::R:::::::::::::Q:::::::: VNG1406 ------------------------------------------------------------ rrnAC0181 -------------M:D::GE:::::::::TS:::::R::::K:::::::::::E:DD::: Hmu0716 :::YES::::::T:HD:VGE::E::::::RS:::::R::::V::::::T::::ENDD::: HVO_1723 ::::::V:S::S:L:::::E::::::A::::::K:::Q::::S::E::T:::::T::::: Hbo3098 ::::::::A::S:M::::::::::::T:::N::K::NQ::::::::D::::::::::::: consensus NVARQKLDDDHLRAPISDTEAWVREEATAAIKRTLYEAGYPVRDDRDLETGDALDVDLRL #oth 111423112332412222333113235416312311211112413131241333533144 HQ2528A ::::::::EEQ:I::::::QN:::DG:E:T::::::::::::I:E:E::::EP:T:T:EA NP4200A :::EPR:::GV:::RLD:ET:::A::R::DL:Q:::::::::Q:H:N:D:::P:PM::T: hla1717 :::D:H:::::::::::E:::::N:D:V::V::A::D:::::E:::::DV::PV:I::TT VNG1406 ------------------------------------------------------------ rrnAC0181 ::::P:::::::::::::S:S::N:D:::E:::::::::::::::::::::::IEM:::: Hmu0716 ::::::::::V:::::::S:S::N::M::QL::::::::::::::::::D::::S:E:G: HVO_1723 :::L:::::::VY:::::::::::D:EI:::::I::D:::::E::::::E:EE:::T:GV Hbo3098 ::::::::EE::V:::::::S:::DGKE:H:::I:::::::IQ::::::::A::::E::A consensus ELRDYQQDWVDRFLDQRSGVLVGPPGSGKTVAAIGALAAIGGETLILVPSRELAAQWREE #oth 41141152135315223211311121211122321321211....1........4...21 HQ2528A :::S::::::NN:::::A::::::S::::::T::::::::::::::::::::::S:::A: NP4200A :::P::S::IA::A:AG::::::::::::::::L:IM:D:E::::::::::::::::::N hla1717 D::S::ET::ET:::A::::Y:::::::::::::ATI:::::::::::::::::G::::: VNG1406 ---------------------------------M:::ESV:::::V::::::::T::::: rrnAC0181 R:::::::::E::TE:G:::F::::::::::::M::M:::::::::::::::::T:::D: Hmu0716 P:::::A:::Q::QE:G:::F:::::::::::TM:VME:V::::::::::::::S:::D: HVO_1723 D:::::R::::::V:::A::::::::A:::I:G::::::V::::::::::::::R::::: Hbo3098 :::E:::::T:::TE:K:::::::::A::::TG::I:::V:::::V:::::::::::::: consensus LLRHTDLDDDQIGEYHGGEKEIRPVTIATYQTAGMDRHRSLFDSREWGLIVYDEVHHIPA #oth 136312134311.1....4.4112......11.......31..3.2....21..11.111 HQ2528A :IQ::::N::::::::::K:TVQS::::::::::::::::::::::::::I::::::::: NP4200A ::NE:T:SPE:V::::::S::::::::::::::::::::::::::K:::::::::::::S hla1717 ::E:STV:PAD::L::::Q::::::::::::I:::::::A:::::K::::CF::A:::T: VNG1406 ::AN:S:TG:::::::::::RV:::::::::::::::::HV::D:::::::::::::::: rrnAC0181 :V:::S:T::D::::::::::::A::::::R::::::::K:::Q:K:::::F:::::V:S Hmu0716 ::L:::::ES::::::::::A:::::::::R::::::::K:::E:R:::::::::Q:::: HVO_1723 :RST::::A:::::::::A::::::::::::::::::::::::::R::::I:::A::::S Hbo3098 I::::S:SE:::::::::Q:QV:::::::::::::::::::::D:::::::::::::V:S consensus PVARRSADLQTKHRLGLSATPVREDDKEEEIFTLIGPPIGTDWSALFDAGYVQEPEVEIR #oth 4132...4..3......1...2..212142.1..1.2...11.32..11.1.1..1.1.1 HQ2528A A:Y:::::::::::::::::::::::::T:::::V::::::::::::E:::::::Y:::Q NP4200A ::H::::Q:::::::::T::::::T:DQQQ:Y::V:Q::::N:E:::E::::A::::::: hla1717 :IFS:::E::A:::::::::::::TGS::::Y::::R:::A::DE::E::F::::::::: VNG1406 E::::::S::S::::::T::::::::::AD:Y::V:R::::::D::::::F:A::::::: rrnAC0181 :IH::::::::::::::T:::T::S:D::::::::::::::::GK:::E:::A::::::: Hmu0716 D::::::R::G::::::T::::::::::::::::V:::::::::::::::F::::::Q:: HVO_1723 R:FQ::::::S::::::::::I::::::A::::::::::::::GK::::::::::::::: Hbo3098 RIY:::::::A::::::::::I::::::K:::::::::::::::K::E:::::::::::: consensus YVPWADDTARNEYASADGRERRQLAAENPAKIAEIRRLLAEHPDAKALVFVEYLDQGEAI #oth 321.4114523.13223.131122.13.12.15113422541443211..111121.131 HQ2528A ::::K:ELSQ::W:N::::D::R::::::Q::TTTKK::GM:S::S::::::W::H:::L NP4200A FL:::SE:H::::G::T:H:K:::::T:::::R::SAI:H:NRGS::I:::::IE::DQ: hla1717 ::::R:EM::::::::::::::R:::::::::E:::Y:::A:R:K:::::I::::::::: VNG1406 ::::R::DD:Y:::A:S:HT::R::::::::E:::EH:VDQ:G:TQ:::::D::S:::R: rrnAC0181 L:::G:E:EQS::S:TS:HD:::A::S:TG::D:::YA:::N:A::::::I::::::::: Hmu0716 QI::S::EVAD::V::V:HG:::T::T:::::D:::H::T:::H:::::::::::::::: HVO_1723 ::G:G::M::::W::S:::::HM:::M::G::F:::::R:R:A:S:T::::D:::::::: Hbo3098 ::::::::::::WS:::::::::::SM::Q::::T::::RQ::KS::::::D::::::EL consensus AEALDVPFISGETPHARRERLFDRFRR---------------GELDTLVISRVGDEGIDL #oth 122111..11..11.32.353.34..4111111111111111233321.1..1....... HQ2528A :D:::A::V:::M::Y::DQV:ES::D:::::::::::::::D:ISV::::::::::::: NP4200A ::::G:::::::::::::SK::G:::G::::::::::::::::Q:::I:V:::::::::: hla1717 :D::G::::::::::HE:AE::R:::EEGTEGGEREGIGADGDDV::::V:::::::::: VNG1406 ::R::A::VN:::::S:::TH::Q::T::::::::::::::::A::A::V::I::::::: rrnAC0181 S::I:A:::::::::::::K:::E:::::::::::::::::::::T:::V:::::::::: Hmu0716 :AE::::::::::R::E::::::E::::::::::::::::::N:R::::::::::::::: HVO_1723 ::::::::V::::R:H:::AY:EA::D::::::::::::::::D::::::::I::::::: Hbo3098 ::::::::::::MR:HH:::::RQ::E::::::::::::::::::R:::::::::::::: consensus PNAELAIVASGLGGSRRQGAQRAGRTMRPTGSALVYVLATRGTSEEDFARRQMRHLAEKG #oth .1112.21...........1.........31412222.....13..11113122..151. HQ2528A ::::::V::::::::::::::::::::::::::Q:::::::::T::E::Q::L::::::: NP4200A :DT:V::A:::::::::::::::::::::V:K:RM:::::::SR::::::KRTK:::AR: hla1717 :::::::::::::::::::S::::::::::::::::::::::S:::E::Q:::::::R:: VNG1406 :D::F:V::::::::::::::::::::::GSQS:LF:::::::E:::H::SR::::ST:: rrnAC0181 :D::::L::::::::::::::::::::::A:D:RMVI::::::T::::V::::::::S:: Hmu0716 :D:::::::::::::::::::::::::::V:D:QL:L::::::E::::V:Q::::::S:: HVO_1723 :::G:::::::::::::::S:::::::::::::::::::::::::::::Q:::Q:::G:: Hbo3098 :::::::::::::::::::::::::::::A:G:::::::::::::::::Q:::::::::: consensus IRVTETDAAAVD------------------------------------- #oth 1..2.43354544434442311222111111111111111111111111 HQ2528A :::::R:V:EE:V:::::::::::::::::::::::::::::::::::: NP4200A V::Q:AEPL:FGDGRVADEE::::::::::::::::::::::::::::: hla1717 :::R::NV:E--::::::::::::::::::::::::::::::::::::: VNG1406 V::::S::SHSP::::::::::::::::::::::::::::::::::::: rrnAC0181 ::::::E:E::EPPAKTE::::::::::::::::::::::::::::::: Hmu0716 :::::Q::E::GERSGRAEDDAGDE:::::::::::::::::::::::: HVO_1723 :::R::S:DDL:PESDGGDTDADTDTEDDESDGAESASADGAESATTDE Hbo3098 V::::S:LTT--:::::::::::::::::::::::::::::::::::::