| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 2916 | HQ1626A | Hmu1068 | Hut0149 | VNG1371 | rrnAC3372 | hla2439 | NP3818A | HVO_1112 | Hbo0616 | Hbo0617 |
| 1414 | HQ1626A | 3327 | 958 | 1023 | 742 | 1089 | 997 | 1106 | 1145 | 947 | 987 |
| 1764 | Hmu1068 | 958 | 3029 | 1543 | 1004 | 1173 | 1249 | 1238 | 1403 | 983 | 1165 |
| 1663 | Hut0149 | 1023 | 1543 | 3103 | 817 | 1256 | 1153 | 1351 | 1407 | 942 | 1167 |
| 1338 | VNG1371 | 742 | 1004 | 817 | 2576 | 1005 | 1087 | 1044 | 1075 | 836 | 1142 |
| 1770 | rrnAC3372 | 1089 | 1173 | 1256 | 1005 | 3116 | 1598 | 1228 | 1353 | 1047 | 1173 |
| 1698 | hla2439 | 997 | 1249 | 1153 | 1087 | 1598 | 3110 | 1250 | 1327 | 1024 | 1105 |
| 1645 | NP3818A | 1106 | 1238 | 1351 | 1044 | 1228 | 1250 | 2863 | 1286 | 1006 | 1076 |
| 2004 | HVO_1112 | 1145 | 1403 | 1407 | 1075 | 1353 | 1327 | 1286 | 3487 | 1180 | 1832 |
| 1378 | Hbo0616 | 947 | 983 | 942 | 836 | 1047 | 1024 | 1006 | 1180 | 2005 | 1239 |
| 1801 | Hbo0617 | 987 | 1165 | 1167 | 1142 | 1173 | 1105 | 1076 | 1832 | 1239 | 2782 |
520 symbols consensus --------------------PMIEVSDLSVSLGDTSILDGVDLSVDEGEFVGLVGPNGAG #oth 133334433323232345652635344243331536324412352531432222111111 HQ1626A :::::::::::::::::MSS:F:TIKN::ITR:SVT:::E:::TAR::A:L:V::::::: Hmu1068 ::::::::::::::::::::-::::ESVD::::::E::RD:S:R:PA::::::::::::: Hut0149 :::::::::::::::::MNHHT::LD:V:::::EVDA:RD:S::::A:::L::::::::: VNG1371 ::::::::::::::::::::---------------------------------------- rrnAC3372 :MSEQTAPEGSDPERDRSG:::LD::::A::F::Q:VVS:::F:::R:SL:::::::::: hla2439 VTAEQSPAGDTDPSPVAAEI:P:::::::::F::VPVVS::::R:ER:SI:::::::::: NP3818A ::::::::::::::::::::-::SL::VV:EF:E:TV::::S:::E::::LA:::::::: HVO_1112 :VSDSDSNSDSGSGPFSDAD:A:RLDGV:L:::N:R:::S:SVD:G::T::::I:::::: Hbo0616 :VTSRRYNGESES::VTGDT:VVS::::A:E::G::::ES:::A::::T::::I:::::: Hbo0617 ::::::::::::::::::::---------------------------------------- consensus KTTLLRALNGAISPDAGSVRVDGEDVHSLSSRATSRLVATVPQDTSLSFNFDVRQVVRMG #oth 111211242.414134.414241443443223351131.11..31333.3.4114212.. HQ1626A :::::::ID:S::TTT::IHIGDIAIE:ADATTI:QQ::S::::::I:::::G:TIIE:: Hmu1068 ::::::TV::::D::::R:L:::DRMSD:::::G::R::::::::GTR:A:S:ED::A:: Hut0149 ::::::TV::V:T::S:A::L::TA:TE:GP:GV::H:::::::::V::A:S:ED::::: VNG1371 -------M::L:T:T::T:L:A:D:::A:::A:A::RI::::::A:V::E:T:::::E:: rrnAC3372 :::V:::VK:TLN::T:T::::::PISNR:AK:V:::::ST::G:A:::D:S:::T:E:: hla2439 :::V:::IK:TL::G::E:LL::DPAE:::A:EAG:R::S:::E:::A:D:R:::I:E:: NP3818A ::::::TC::VLT:A::T:T:A:R::AAT:A:ELG:Q::::::E:T:A:E:::EA::::: HVO_1112 ::::::T::::LA::E:A:::V:::::A:::K:::::::::::T::VT:D:P::E::::: Hbo0616 ::::::::::::::AR:::IIS::M::::::K:::::::::::::::T:::::::TI::: Hbo0617 -------:::::::AR:::IIS::M::::::K:::::::::::::::T:::::::TI::: consensus RTPHRSRFG-GWREDDRAAVERALERTQTAAFADRPVTSLSGGERQRVLLARALAQETPV #oth .1.123.241454331451123.24235335132152241....1..222...1..31.2 HQ1626A ::::::::A:T:T:T:DT:::Q:INQVDAD::V:Q:::T:::::Q::I::::::::Q::: Hmu1068 ::::::::::--SD:GGD:::::::::S::S:R::RIST:::::::::FV:::I:::A:A Hut0149 :::Y:A:TDLTGD:A::E:I:::::::EM:DLR:::I:AV:::::::AFV::::::D::A VNG1371 :H::TT::::--TDT:T:V:D::MA::GV:Q::A:D::::::::::::::::::::AA:: rrnAC3372 ::::LG::D:RMD:A::R:::::M::ASVTQ:::::F::::::::::::::::::::::: hla2439 ::::LG::D::HGP::ER::RE:MDAGGV:R::::AI:EV:::::::::::::::::::S NP3818A :::::::LS:PADSAG:::::S:::::E:::::::SID::::::::::M:::::::A::: HVO_1112 :::::G::E:::::R:DE:::S:MR::AVESL::::::EV:::::::::I:::::::::: Hbo0616 ::::::::::::::::ES::::::D:::::ELSE:T:SD::::::::::I:::::::::: Hbo0617 ::::::::::::::::ES::::::D:::::ELSE:T:SD::::::::::I:::::::::: consensus LLLDEPTASLDINHQVRTLELVRDLVA-DGKTAVAAIHDLNLAARYCDELVLLADGRVRA #oth .1.........1111221.22153.2312122121.....22..11..4222123.3363 HQ1626A ::::::::::::HR:IQ:::S:AR::E:T::::I::::::::::::::IIC::TE:SIT: Hmu1068 :V:::::::::V::AT:::S::CE::::::RAVLG:::::EA:::F::R::M::::E:V: Hut0149 :V::::::::::::::GV::::GE:I::::RG::::::::D:::::::R:A:::::ELQ: VNG1371 :::::::::::V:::I::::V::::ADSEDRAV:::::::D::::::::::VV:::::HD rrnAC3372 ::::::::::::::A:::::::QT::E:::::::::::::::::::::::::::G:G::: hla2439 :::::::::::V::A::::::::R::D:::RA:L::::::DM:::::::I:V::N:G::: NP3818A :::::::::::::::::::A:A:E:AD:::::V:::::::E::::F::TVA::S:::ILD HVO_1112 ::::::::::::::::::::::S:::::::T:::::::::::::H:::A::::SG:::LS Hbo0616 ::::::::::::::::::::::::::G:E::::I::::::::::H::::::::S::G--- Hbo0617 ::::::::::::::::::::::::::G:E::::I::::::::::H::::::::S::::V: consensus AGPPADVLTADTLRAAFDAEAVVTTNPVTGSPTVTAL--------PDQ----EDANRR-- #oth 514.251.26451353.1545413543412335113311111111226124585686411 HQ1626A I::::E:::TP::AGT:GGYP::::DLI::TAN::T:::::::::::ERAKTT:NTTNDQ Hmu1068 S:A::::::::A:ATS::M:S:::R:::::A::::P:::::::::S:T::::G:ER:S:: Hut0149 V:D:ET::SDEH::P:::TRTA::PDA:::T:S:::I::::::::AEP:::RR:R:AH:: VNG1371 ::A:RS:::P::I::::::RVA:G:D:A::AV:::P:::::::::::R::TSAA:DTS:: rrnAC3372 ::R::::::S::::D:::::TL:::Q:G:DA:L::P::::::::::E::::::SVA:::: hla2439 ::::E:::::G:::D::::::F:GE::A::::::::FDGGGGGDSA:S::AELAELL::: NP3818A S:R:EA::::ER:E:::GVRTA:G::::::::S::P:::::::::A:A::::PPDGQ::: HVO_1112 ::D:ET:::EGN::E::::::::SRH:::::VY:::::::::::::PS:::SD:::G::: Hbo0616 ---:RCE:GGTSILEF::LP-----------------:::::::::EE::::------:: Hbo0617 T::::S:::ETN:EG::G:N::::HH:::::VY:::::::::::::::RSDA:K:QGH:: consensus ---------------------------VHVVGGGQPAARALARLAAAGYAVSAGPLPEGD #oth 11111111111111111111111111121231516433343641452.562131252412 HQ1626A STHEQHDESTIVGDSSEYSRETSSQPII:II:H:::VIT:MSE:V::::T:TV::A:A:S Hmu1068 ::::::::::::::::::::::::::::::L:::RVG:AVV:::H:::FG:T:::V:::: Hut0149 ::::::::::::::::::::::::::::::L:S:AT:::::TK:WQ::FE:T:::M:S:: VNG1371 ::::::::::::::::::::::::::::::::::DS:TPVVR::VS::AS::V::VV::: rrnAC3372 ::::::::::::::::::::::::::::::::T:T:::A:VSK:VG::CR::I:VV:A:: hla2439 :::::::::::::::::::::::::::I::::S::::G::V:::::::H:::V:VI:::: NP3818A ::::::::::::::::::::::::::::::L:A::::::L:GD::ER:ID:T:::::T:: HVO_1112 ::::::::::::::::::::::::::::::::::GTG::::HL:S:::::L:::A:N::: Hbo0616 :::::::::::::::::::::::::::----------GTFF:LI:PN:AGKTTF:R:--- Hbo0617 :::::::::::::::::::::::::::I::::::GT:::Y:YL:S::::E::V:A:N::: consensus TAAETAARLDAEAVTVPPFSAVDDSARAEAADR-IAAADVTVLADVEAGPDGL--LEAAA #oth 444552543375652332444464456543766144313332434554355463535344 HQ1626A VT:T::D:VATSVM:T:AYKPITE:MTT:LRSK::D::AAV:::N:DLTK:ANAIVT:VD Hmu1068 ELLGVSE:::VPTE::::M::L:G:TL:A:GE:::DE::::::::LTLT:::G:L:DL:: Hut0149 ::LSV::E::I::I:A::L:GPSE::LR::QEH:CRT:VA:::::P:V::::T:V::L:E VNG1371 :DH:::R:VGCPCTS:A::TRLE:TTA:S:TRAD::::::IAVPVAA:ARP:VRG:LTG: rrnAC3372 ::::R::D::C::::::A:AGI::A::QR:::L:A:T::AV:I:G-:T:DGNSPVI::GG hla2439 A::GI::DA::QI::A:::A::PPER::::VVF:ARE:::::AVG-:::KA:S::-::GG NP3818A V::A::GSVGR::::A:::KP:SE:DIEA:T:L::E::::::::GRP:::TE-::-RLT: HVO_1112 :D::A:R:VA:DL:::::Y:P:::A:::AVES::VD::::::V::::V:DGN:AN:D::: Hbo0616 ---------------------------------:-------------------::----- Hbo0617 :DT:::RS:GLDV:::N:::::G:A:Q::V:T::V:E::CV:V::::V:TGN:AN:R::: consensus EA-R---V---------YAGDAQRDAYERLRERARTVAPGDLLSAV-------------- #oth 543343421311231127456456645746655665667655353422111111111111 HQ1626A Y:ENIITL:::::::::TQQ:P:QKPQQDTTHDNL:QT:I:E:PYSRD:::::::::::: Hmu1068 ::GQTVV:EERPLDERDR::TD::RR:::::::VT:SGLD:VAAT::::::::::::::: Hut0149 SSG:PIL:ETRPLGERNHG:QDA::R:RD:ES::L:ASIHG:VP:I:::::::::::::: VNG1371 --:-:::-:::::::::VPTL:VG::AGAPEWAD:L::CDAVV::::::::::::::::: rrnAC3372 AC:-:::-:::::::::F:VETDES::TSNGHDTVPLTALPAAV:S:::::::::::::: hla2439 :T:-:::-:::::::::A:NA:VLT:SD:IAHVDD:FDD:E::D:::::::::::::::: NP3818A RSE:LLAL:::::::::--------PGTDAPPS:HIA::::IVD:L:::::::::::::: HVO_1112 ::D:LVL:EQRPFSERN::::DGFAV:::::::G:V:E::::::::GELACDAFAARDDG Hbo0616 --:-:::-:::::::::-----------------------------:::::::::::::: Hbo0617 ::E:IVL:EERPFGERN:::E:G:S::N:::::GVV:SSA:V:::::::::::::::::: consensus -------------------RTARADAPPAVS--------- #oth 1111111111111111155657664584764534532313 HQ1626A :::::::::::::::::TVN:KTT:DKSI::VIEELLASD Hmu1068 ::::::::::::::::::::SVG:::GRH::RRGI::::: Hut0149 ::::::::::::::::::AE:I:PQ:V::DD::::::::: VNG1371 :::::::::::::::::::-G:L::T:SDGV::::::::: rrnAC3372 :::::::::::::::::LPPATER::T:PL:QSTTD:::: hla2439 ::::::::::::::::::::GRT::TA:DR-::::::::: NP3818A :::::::::::::::::EDP:R:QTSSS::E::::::::: HVO_1112 ATGDADRETGATADESGATD:EST::DAVSDDRVSDLFSS Hbo0616 :::::::::::::::::::------------::::::::: Hbo0617 :::::::::::::::::QTQL:EHGQ::LD:ESVGTTSSE