|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1986 | HQ1234A | hla2698 | VNG0363 | NP1158A | HVO_0726 | Hbo0808 | rrnAC0676 | Hmu0896 | Hut0108 |
1260 | HQ1234A | 2141 | 1053 | 905 | 951 | 1130 | 1217 | 1134 | 1029 | 976 |
1399 | hla2698 | 1053 | 2274 | 1146 | 1095 | 1199 | 1121 | 1157 | 1104 | 1107 |
1314 | VNG0363 | 905 | 1146 | 1982 | 1110 | 1040 | 998 | 1119 | 1080 | 1002 |
1356 | NP1158A | 951 | 1095 | 1110 | 1881 | 1159 | 1076 | 1104 | 1095 | 1048 |
1524 | HVO_0726 | 1130 | 1199 | 1040 | 1159 | 2085 | 1350 | 1208 | 1187 | 1090 |
1405 | Hbo0808 | 1217 | 1121 | 998 | 1076 | 1350 | 1970 | 1156 | 1161 | 1034 |
1447 | rrnAC0676 | 1134 | 1157 | 1119 | 1104 | 1208 | 1156 | 2037 | 1278 | 1146 |
1453 | Hmu0896 | 1029 | 1104 | 1080 | 1095 | 1187 | 1161 | 1278 | 2031 | 1137 |
1273 | Hut0108 | 976 | 1107 | 1002 | 1048 | 1090 | 1034 | 1146 | 1137 | 1882 |
310 symbols consensus ------------MRPARPEFRPDPSLSRDEMESLQRDIAAAADFADDLGFDPAAIR---- #oth 111111111122364432435131422352.231.232.23.613144444234253242 HQ1234A :::::::::::::Q:TDSKRI:::EM:Q:::KA:::Q::D::CWQ:T:SVN:EM::WEPT hla2698 MAPPADLPQGHPDNIE:::LL:::::::A:::::::EL::T:T::::H:I:::VVAIDEP VNG0363 ::::::::::::::VV::::::A:G:DT:A:A:R::::::V::::::H:LT:ER:G:::: NP1158A :::::::::::::EL:T:R:::::::::EA::T::H::::::S:ENEASPS::::::::: HVO_0726 ::::::::::::::::::DLA:R:G:::::::::::RV:ET:V:::::P::S::VS:::: Hbo0808 :::::::::::::D:V::::L:::A:::::::A::Y:V:D:::WS:AFD::AQEVS:::: rrnAC0676 ::::::::::MTVH:V::::V::::::QT:::E:::::::::R:E:EMDVL:E::T::RT Hmu0896 :::::::::::::E::::::V:::A:::G:::::::E:::E:T:::::::::::L::::: Hut0108 ::::::::::::------------------::A:::E::DV:L:E:GFA:::S::EFDSP consensus -D-----PDTEQHTLDGAT---G----DAD---PLVAGVDQAFL---D--DRAVSAVVVL #oth 5351111436426326454444411111434311311.1..1.21111332332..2.24 HQ1234A ETT::::K::T:K:I:SS:STTDIPNQ:::ETQ::::::::::R:::TEQSEVI::I:LT hla2698 A:LTDGL::AR:E::P:THPNT::::::P:A:::V:V:I:::::TPD:GE::::::A:AI VNG0363 L:E:::::PG::AA:G::::TS:::::E:A::::V:V::::::R::::D:EVS:::A:AI NP1158A :-:::::------------:::-:::::G::::A:::::::::::::::::::::::::: HVO_0726 LAS:::::E::HQ::AE::ALDA:::::::SP::::::I::S:::::::::::L:::::: Hbo0808 :-:::::-------:::EASLS::::::R-::::::::::::::::::::::G:::I::A rrnAC0676 G:A::::::VD:T::STSA:::D:::::RTEP::FI:::::::V:::::::K::::I::: Hmu0896 :-:::::S:P:::R:GEDVGDGS:::::SAPAQ::::::::::V:::::::V:::::::S Hut0108 V:L::::G:DD::R:T:--:::-:::::G-::::I:::::::::::::DG:::L::::A: consensus RGGEVVERAHAVTDLEIPYIPGLLSFREGGPILAALSELDVEPDLLVVDGSGRIHFREAG #oth 1224.121342343122..1....1....21121.1451453..2222.....1.1.1.. HQ1234A ::AT::D:IV:::::S:::::::::::::::::::FE:ISQK::ITMF:::::M:Y:Q:: hla2698 :D:V:I:Y:S:I:P:S::::::::A::::E::::::DA::A::::::C:::::::::::: VNG0363 :D:A:I:::AGNAP:DV::V::::A::::SAVID:::S:S:::::::::::::::Y:Q:: NP1158A ::::::A:E::::P:S::::::::A:::::::ID:::R:::::::::::::::::::::: HVO_0726 ::::::::::V:S:::L::::::::::::::::D::A:::CD:::::F:::::::::Q:: Hbo0808 ::DT::::V:::::::::::::::::::::::V::FEK:SCD:::::F:::::::::Q:: rrnAC0676 QN:::I::VS::ERT:::::::::::::::A::::FA::ETD::VVL::::::::::::: Hmu0896 ::D:::::V::AVET:::::::::::::::A:::::G::RRT:::::::::::::::::: Hut0108 QD:R::D::Y::V:T:::::::::::::::A::::::N:A:::::::::::::::::::: consensus LATHIGVLFDVPAVGVAKSLLCGTPAEDLDGR-PEGTRTPIEADDSVET---APDG--TV #oth 1...3.123.3.21....2....4.5443243323.2234.4..2212421225421133 HQ1234A :::::::VL:I:TI:::::::::::ES:TAQ:::T:WQ:Q:N::ET::D::::DTE:::: hla2698 I:::V:::L:::S::::::::::V:D:ST:E:::A:W::::R::G::::AGS:G:A::P: VNG0363 ::::V:::::::::::::::::::::AA:ADPL:A:::VA::::::MD-:::::::::A: NP1158A ::::A:L:::::::::::R::::E:SRTVASL::::::V:::::::MT-::::A:::::: HVO_0726 ::::L::VC:A:SI:::::::::::D::V:::::::W::::R:::::DAVGGH:A:SE:T Hbo0808 ::::L::V::K:S::::::::::H:T::V:::::::W:AE:L::::::N::::DS:::DP rrnAC0676 :::::::TL:::::::::N::::::EQS::E:Y:::::I::T::::::::::C::::::: Hmu0896 ::::V::::::::I:::::::::R:R:S:::KLSV::TVG:::::::::::::TP:::AL Hut0108 :::::::TV::::I::::N::::::::PIPD:MA::D:I:::::ER:::::::EP::::: consensus IGHALQSRQYDS-S-RHINPLYVSPGHRVSAATAVDLVEALCAGYKLPEPTRLADAYADE #oth 1.1.3.1...23241341..111.....1226.23321422433....2...3..43.13 HQ1234A ::::::T::::::R:KI:::V::::::::::T:::KITQ:::D:::::::::R::::::: hla2698 ::::F:::::PN::::RV::::::::::::P::T:E::::::::::::::::I::::::A VNG0363 V:Y:::::::PTPET::::::::::::::::G::A:::::T:TQ::::A::::::Q::AD NP1158A V:Y:Y:::::PD:::KR:::::I:::::LC:E::::C:A:CGGE::::R::::::GH::D HVO_0726 ::Y:F::::::::R:PVV::::::::::L::::T::::SR:SGS:::::::::::::::: Hbo0808 ::::F::::::T:E:PI:::::::::::::VP::TT::SQ::G:::::::::Q::::::D rrnAC0676 ::::::T:::::PN:::::::I:::::::::S::A:I:::TAD::::::::::::S:::: Hmu0896 ::::V:T:::::PK:::V:::::::::::G:E:VPE::L:TT:::::::::::::SD::: Hut0108 ::::V:T:::Q:G::TS::::::::::::::V:TA:::SQCA:::::::::::::RK::R consensus AKAEYRD--- #oth 3126453411 HQ1234A I:R::S:N:: hla2698 V:RDAVRA:: VNG0363 LT-----::: NP1158A L::R:G:G:: HVO_0726 :::Q:E:::: Hbo0808 V:::::-::: rrnAC0676 :::TVE-::: Hmu0896 :::AV::DRA Hut0108 L:R:GGEA::