|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3367 | HQ1244A | VNG0378 | hla2422 | HVO_0716 | Hbo0820 | NP0808A | Hut0133 | rrnAC0704 | Hmu0928 |
1900 | HQ1244A | 3945 | 1292 | 1507 | 1555 | 1751 | 1478 | 1534 | 1506 | 1514 |
1664 | VNG0378 | 1292 | 2961 | 1322 | 1414 | 1416 | 1469 | 1344 | 1212 | 1269 |
2340 | hla2422 | 1507 | 1322 | 3759 | 1986 | 1940 | 1764 | 1837 | 1700 | 1841 |
2308 | HVO_0716 | 1555 | 1414 | 1986 | 3320 | 2116 | 1711 | 1735 | 1703 | 1814 |
2376 | Hbo0820 | 1751 | 1416 | 1940 | 2116 | 3365 | 1786 | 1805 | 1711 | 1809 |
2256 | NP0808A | 1478 | 1469 | 1764 | 1711 | 1786 | 3342 | 1926 | 1747 | 1884 |
2427 | Hut0133 | 1534 | 1344 | 1837 | 1735 | 1805 | 1926 | 3442 | 1838 | 1981 |
2201 | rrnAC0704 | 1506 | 1212 | 1700 | 1703 | 1711 | 1747 | 1838 | 3439 | 2050 |
2342 | Hmu0928 | 1514 | 1269 | 1841 | 1814 | 1809 | 1884 | 1981 | 2050 | 3474 |
565 symbols consensus ---MIAIVVSRADSASEHIGEHLLELADWEERRDESRPDGAGGGTYYRTDGFELREFDDL #oth 111222311142161132233413324214455145132432122243525412142253 HQ1244A MPTV:GL:::S::T::VT:SDQ:H::VE::SH::------:A:DE:EQY:D::M:TI:EW VNG0378 :::--------------------------------------------------------- hla2422 :::V::::::::::::::::::::D:G:::R:D:P::::AD::::::::::::::::::: HVO_0716 :::V:G::::::::::V::::::::::::D::T:GD:::AD::::VFSR::::::::::: Hbo0820 :::V::V::::::N::V::::R:::::::V:QT:D::::E::::::::HGE:::::::GW NP0808A ::::L::::::::E::::::RK:RS::::T:HE::R:A::::::::::::RA:::I:::: Hut0133 :::::G::::T::R:::::H:::::V:::TTT:::::SP:E:::EVS::::::M:V::EW rrnAC0704 ::::LG::::H::A::M::::::RS:R:::TSV::T:::DE::::V:QI:SV:::::EA: Hmu0928 ::::L:V::::S::::::V::R::D:VE:T:TV::E::::D::::V::R:EI:::T::SI consensus HLDLDNVAAAF-----------------DDPDLLVFASRHSGETGPLLTAHHTGNFGPAE #oth 1243253252111111111111111112442332112.1.1.1.12..21.4.....2.2 HQ1244A ::EAE:ASEL:::::::::::::::::STT:QIIA:L:::::D::::::T:F:::::::: VNG0378 -----------:::::::::::::::::----MV:VV:::::D:::::S::Y:::::A:: hla2422 :IY::DP::::GGGAGDETNDAASDDTDET:EF:A:V::::::::E:::::V:::::::P HVO_0716 :I:::DP:E::::::::::::::::::DA:L::V:VV:::A::::A:::::F:::::::D Hbo0820 ::E:ER::D::::::::::::::::::SES:EFIA:V::::::::::::::F:::::::: NP0808A :IH::GA:S:::::::::::::::::::EE::::::::::::D::::::::A:::::::: Hut0133 ::E::G:::::::::::::::::::::::::::V::::::::::::::A::::::::::: rrnAC0704 :::IE:::::::::::::::::::::::::::::::::K:A:::DE:::::::::::V:: Hmu0928 ::::ES::T:::::::::::::::::::::::::::::::A::::::::::::::::::: consensus YGGEDGSLARACPNAHKAVVEALARHAPDDYDVGIECTHHGPTDVGAPSMFVELGSDEDQ #oth 2..32262.211.2134213211443..34.1.12.1.....15223111...1..3231 HQ1244A ::::P::F:Q:::MIQQTLL::FD:Y::SK:::::::::::::T:::::L::::::SKAE VNG0378 :::A:R:V:P::::::H:::DS:RSY::PE:::AM::::::::S::::::::::::SPAE hla2422 ::::PDT::::A:G:E:R::::::A:::EG::::::::::::::TSV::L::::::::P: HVO_0716 ::::P:RF:::::::QR::I:::RER:::::E::::A::::::EPTV:::::::::::E: Hbo0820 :::DS:AF::S::::Q::::::FD:::::A::::V:::::::::P:::A:::::::G::E NP0808A :::G:::::::A:::LS::RD:FET:::::::::::::::::ST::CS:L::::::GP:: Hut0133 :::A:RD::::A::::SR:LD:::E:::EG:E::M::::::::E::S::L:::V::GP:: rrnAC0704 H:::::QF:::::G::::::S::Q::::P::E::M::::::::A::V::::::V::A:P: Hmu0928 F::A::V:::::::::RR:::::ESF::EG:E::M:A:::::SV:::::::::V::::P: consensus WDDPDGARAVARAILDLRGVAAD---E------------TRRHLVGFGGGHYAPRFERIV #oth .5.321.3.1.211131312412343231122111111143.311111.1..2..12.13 HQ1244A :N:::::H:::Q:::E:S:ED:PANV::::::::::::::D:TV:::::::::::::::I VNG0378 :Q:DA::::::::VR:::::PPH:::-::::::::::::GD:AV:V::::::T::AT::L hla2422 :T:A:A:::::::V:::::TD::LVTDAGETTDEIDDDPHP::V::::::::::::T::: HVO_0716 :G::E::::::A:V::IE:::P::::-::::::::::::AD:Q:::::::::::::::VL Hbo0820 :E::A::::::QSV:::S::T:::::-::::::::::::RE::::::::::::::::::: NP0808A :Q:SE::A::::S::S::::EPH:::-:::::::::::::E:TV::::::::::::D:VL Hut0133 :::::A:::::Q:::::::::::APR:DGEAS:::::::A:::::::D:N::V::::::: rrnAC0704 :E:::A:E:A:::::::ADEP::RPR:NG:::::::::::::::L:V:::::::::::V: Hmu0928 :::A:A:::::::::A:EDTEP:ASR:NG:::::::::::::::::::::::::::::VR consensus RETDWAVGHIAADWALDALGAPADNRD----VIRRAFEASAADYALVEGDRPELEAAIED #oth 31.1.41..11.2.4.32114153233111112441143.4134.13221113.432234 HQ1244A :::::V::::G::::::SM::::A:::::::I:NH:VT::D::V:::AD:::::TKV:SQ VNG0378 AD:::P:::V::::S:TE::R:NAH:G:::::VDAM:T::G:AH::::::::::TET:R: hla2422 :::E:::::VG:::::GE::::DA:::::::::EQ::AR:K:NV:VI::EK:D:::TV:A HVO_0716 N::::R::::::::Q:K:M:::EN::::::::L::::::::::L:::D:::DD:A::L:A Hbo0820 ::::::::::G:E:P:::M:S::E::::::::::::::::::E::VI:::::::VEVV:S NP0808A TD:::G:::V::::S:TE::D:R:S:A::::::AK::Q::GTEF:::D::::::::V::: Hut0133 ::::::::::::::G:::::D:L::E::::::L:A:::K:::E:::ID::::R::R::D: rrnAC0704 ::::::::::::N:S::::AEW::SDEERDT:LD:::R::::::::M:::::D:T::::S Hmu0928 ::::::I::VG:::::::M:D:R::P:::::::E::::Q:R:::::L:AE::A:RET::G consensus LGYRVVSETWVRETTGVPLPLVEALEADLAPIDDGLRFGEPARAYD----GEFVVVDL-- #oth 2142113.21121351121432531.43353123...2.241444412211335253311 HQ1244A ADI:::Q:R:L::::::SR:M:S:::NA:V::AS:::L:T::TE::PATSD:::IT:RHT VNG0378 :::T::::::::::D::::SR:A:::ES:TTV::::::::::ATHT:::::GYL::E::: hla2422 ::H:::::::::AVGDR::::::R::S:::T::E::::::VVP:SP::::DAIR:RG::: HVO_0716 E:F:::::::::::A::::DR:A:::::VTTVEE:::::ARVD:--:::::DYE::S::: Hbo0820 :::::::::::T:SD::S:ERL:T:::::SSVEA:::L:AD:D:DA:GDSDDYTI:S::: NP0808A ::FE:L:::FLQ:::::::S::GR::D:CG:::::::L::::TG::::::::::TEE::: Hut0133 ::LEI:G:S:L:AVE:::::VARRV:DR::A::::::::::::G:::::::D:QI::I:: rrnAC0704 :::::::::F:Q:A:::N:G::::::DAIR:V:E:::::AL:PG::::::::WT:L:::: Hmu0928 ::::::D:::::::S::S:G::DQ:::AIG:::::::C:::::NH::::::::::W:P:: consensus -----------------------------------------------------PDELLSE #oth 111111111111111111111111111111111111111111111111111111441254 HQ1244A DNDAVGTVHTKDSTDIDTGTNHNVDAERTESEDSHNIRDAIDRADADAVVLAF:TS:MET VNG0378 :::::::::::::::::::::::::::::::::::::::::::::::::::::::AV:DA hla2422 ::::::::::::::::::::::::::::::::::::::::::::::::::::::ED:::R HVO_0716 :::::::::::::::::::::::::::::::::::::::::::::::::::::::G::G: Hbo0820 :::::::::::::::::::::::::::::::::::::::::::::::::::::::D:::: NP0808A ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::D: Hut0133 ::::::::::::::::::::::::::::::::::::::::::::::::::::::G:::N: rrnAC0704 ::::::::::::::::::::::::::::::::::::::::::::::::::::::K::I:D Hmu0928 :::::::::::::::::::::::::::::::::::::::::::::::::::::SG:::AR consensus AQGIDREATRAAVEENALAFDTEQGGTRAAGRAALADAD---DYDALVDALAAVLRAKYD #oth 2511.5323362455422.25.43312433123234373111534432451441.57521 HQ1244A IS:::I:T:NQVFS:HT:::E:TE::::PT::MIVS:YL:::SVESITH::IDI:KL::: VNG0378 :HAV:TA::V::GRSH:::VT:VNA:R:L::S::FP::::::A:E:F::DV::::N:E:A hla2422 :::V:AD:A:V:::T::V::::::A::::::SV:F::DEVSPG::D::AD::G::ERG:: HVO_0716 :::::LD:ALS::R:TTV::H:TE:::::V::::V:G-::::G::E:ASR:CD:::E:H: Hbo0820 :A::::D:A:T::H:::V:YE:RE:::K:::::::THE::::R:NE::::::S:::K::: NP0808A :N:V::T:V:E:ADAV:::YG:AD::SL:V:PV:::A:::::::RS::ES:::::DT::: Hut0133 ::::::::::D:::GV::::T:::SA:LVGD:::VV:G:::::RI:::E:::D::::D:: rrnAC0704 VR:V:S::L:DTI:RQSI:YA:::N::VVT:PIVCPATT:::ELE:V::P:VEI:KQRF: Hmu0928 :S:::::R:::V:ART::::::::N::EVV:PV::PAP:::::R:PI:EG:T:::APS:: consensus SVERDDDAVVARREAFDPALAAEAGVPEGPAFGKLAAGESVEVDGETVAPADVSRERTVR #oth 5.5363441312332..142.144111...1..2.12.321221.1214.3315322443 HQ1244A R:::T:ETLRV::QV::::K::TLD::::::::R:::::::T:A:R:ID:EA:HTTE::T VNG0378 ::S:A:GELT:T::V:::EA::AL:::::::::R::G::AI:H::R:I:::A:TSTE::: hla2422 T:DIT:G::I::ET::::E:::KR:::::::::R::S::::::::::I::::::::::N: HVO_0716 ::V:::G::T:TTR:::::A:R:F:::::::::::S::Q:::::::::::E:::K::L:E Hbo0820 D:RHKQT::::T::S::A:A:::L:::::::::::S::Q::T:::RE:M::::RS:E::A NP0808A :::IEAST:I:H::::::E::RD:::D::::::::SS:A::D::::::T:D::H:V:ER: Hut0133 V:TVR::R::::K:::::G:::D:::::::K:::::S:QP:D::::R:E:GE::::HEET rrnAC0704 ::::NA:EL:::ET::::D::RT:DI::::K:::::S:::::I:::EID:ERFQ:::IR: Hmu0928 E:V::G:CLR::ET::::S::R:H::::::K::Q:S::R:::::::::D::::V:::VDE consensus FPV---------------------- #oth 2533344323333333223222221 HQ1244A :::FSTSSSSSSSSSSSSSSSSSSS VNG0378 AD:ALHERPRERVRRPSDDEGKGN: hla2422 ::IDSPTDSAAEPPTEPSE:::::: HVO_0716 :S::::::::::::::::::::::: Hbo0820 :KI:::::::::::::::::::::: NP0808A :EF:::::::::::::::::::::: Hut0133 ::::::::::::::::::::::::: rrnAC0704 YTL:::::::::::::::::::::: Hmu0928 :ELAEVRSP::::::::::::::::