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[N] (FlaB) COG1681 Archaeal flagellins
1 genomes BUD4419 6 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi

VNG0960

VNG0961

VNG0962

VNG1008

VNG1009

VNG1181

 - - - - - - - -

Pairwise sequence scores
Consensus score1298 VNG1181 VNG0961 VNG1008 VNG1009 VNG0960 VNG0962
698VNG1181 1504 615 697 549 676 572
1072VNG0961 615 1238 1147 947 1005 996
1170VNG1008 697 1147 1409 974 1188 1020
1064VNG1009 549 947 974 1226 1054 1065
1223VNG0960 676 1005 1188 1054 1391 1152
1127VNG0962 572 996 1020 1065 1152 1214 

215 symbols
consensus       ----------RGQVGIGTL-VF-AMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSN
#oth            111112222211111111121121.1....1..11.1111.2...1.1......11..1.
VNG1181         :::::MESMR:::::::::V::M::I::::M::ST:VDIG:M:::R:D::::::VG::T:
VNG0961         ::::::::::---------:--:-::::::::::::::::::::::::::::::::::::
VNG1008         MFEFITDEDE:::::::::I::I::::::::::::::::::F::::::::::::::::::
VNG1009         ::::::::::---------:--:-:::::::::::::::::F::::::::::::::::::
VNG0960         MFEFITDEDE:::::::::I::I:::::::::::::::::::::::::::::::::::::
VNG0962         ::::::::::---------:--:-::::::::::::::::::::::::::::::::::::

consensus       RINIVSAYGNV--------NNEKVDYVNLTVRQAAGADNINLSKSTIQWIGPDKATTLTY
#oth            111111.1.11111122333323.212111.1.1..11.1.1111.11.1..13....12
VNG1181         GVSVTG:F:TITNATDDPFTDGT:SDIEIV:G:S::SG:V:V:DV:VD:V::RQ::::SW
VNG0961         :::::::::::::::DTSGST:V:N:A::::::::::::::::::::::::::T::::::
VNG1008         :::::::::::::::KTASGTDT:::A::::::::::::::::::::::::::T::::::
VNG1009         ::::::::::::::::::::::E::::::::::::::::::::::::::::::::::::H
VNG0960         ::::::::::::::::::::::::::::::::::::::::::T::::::::::R::::::
VNG0962         ::::::::::::::::::::S:::::::::::::::::::::T:::::::::::::::::

consensus       DGNT---ALGENFTTESIKGNNADVLVDQSDRIKIIMYAAGVSSN------------GLG
#oth            334212222212.1.3111.2112..1211...11112.3312221111111111111.2
VNG1181         TDG:::::NSSR:::RKAT::S:T::A:AE:::E:VIN:TA:EE:QDSFSGTSNDNH::Y
VNG0961         ::T:::::DA:::::N::::D::::::::::::E:V:D::EITT:::::::::::::::K
VNG1008         ::S:::::DA:::::::::::::::::E:::::::V:D::SITT:::::::::::::::K
VNG1009         ANAADKTT:::E:N:T::::::DN:::Q::::::V::::G::::K::::::::::::-::
VNG0960         SS:S:PSS::::::::::::SS::::::::::::V::::S:::::::::::::::::-::
VNG0962         SS:S:PSS:::::::::::::::::::E::::::V::::S::::T::::::::::::-::

consensus       AGEEVQLTVTTQYGSKTTYWANVPESLKDKNAVTL
#oth            1.1111.11.....11....13....11111..21
VNG1181         :::RAE:VI:::::AS::::VS::::VTGAS::SV
VNG0961         :::::::::::::::::::::::::::::::::::
VNG1008         :::::::::::::::::::::::::::::::::::
VNG1009         ::D::::::::::::::::::::::::::::::K:
VNG0960         ::D::::::::::::::::::Q:::::::::::::
VNG0962         S::::::::::::::::::::H:::::::::::K: