|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2221 | VNG2233 | hla0633 | NP1312A | rrnAC2476 | Hmu3160 | Hut2308 | HQ3398A | HVO_0135 | Hbo1361 |
1190 | VNG2233 | 1743 | 1145 | 1093 | 954 | 1049 | 1005 | 1086 | 1107 | 1063 |
1884 | hla0633 | 1145 | 2538 | 1700 | 936 | 1549 | 1537 | 1638 | 1670 | 1741 |
1776 | NP1312A | 1093 | 1700 | 2197 | 986 | 1666 | 1591 | 1521 | 1517 | 1575 |
1085 | rrnAC2476 | 954 | 936 | 986 | 1481 | 1040 | 1013 | 901 | 889 | 951 |
1728 | Hmu3160 | 1049 | 1549 | 1666 | 1040 | 2306 | 1739 | 1442 | 1543 | 1552 |
1724 | Hut2308 | 1005 | 1537 | 1591 | 1013 | 1739 | 2552 | 1437 | 1554 | 1537 |
1732 | HQ3398A | 1086 | 1638 | 1521 | 901 | 1442 | 1437 | 2635 | 1574 | 1706 |
1816 | HVO_0135 | 1107 | 1670 | 1517 | 889 | 1543 | 1554 | 1574 | 2225 | 1776 |
1889 | Hbo1361 | 1063 | 1741 | 1575 | 951 | 1552 | 1537 | 1706 | 1776 | 2299 |
420 symbols consensus ----------------------------------------------MDEEFGLVEPEEAD #oth 111111111111111111111111111111111111111111112244523233444433 VNG2233 ::::::::::::::::::::::::::::::::::::::::::::::-------------- hla0633 :::::::::::::::::::::::::::::::::::::::::::::::S:::V:L:::--: NP1312A :::::::::::::::::::::::::::::::::::::::::::::::T:DD::LSADDGE rrnAC2476 ::::::::::::::::::::::::::::::::::::::::::::::-------------- Hmu3160 ::::::::::::::::::::::::::::::::::::::::::::MSD:GD::::DT:::: Hut2308 ::::::::::::::::::::::::::::::::::::::::::::::-MT::::IDD:G:E HQ3398A MTDHDHDNNHENSGHRSDIDNAEDEAEAEADIESTDAEMSKINAETT:SDS:F:A:DVV: HVO_0135 :::::::::::::::::::::::::::::::::::::::::::::::TD:::M:::Q:GE Hbo1361 ::::::::::::::::::::::::::::::::::::::::::::MTES::::::::A::G consensus QPGDEWEEIDVSDTEADRIARRRDREFDEFRKRIKDTEQFKVEASVFDDATFAAIYKLVQ #oth 531212232113121112111431131321131222221112331111111321211111 VNG2233 ------------------------------------------------------------ hla0633 :::::::KL:::::::::::::Q::::::::::::::::::LQE:::::::L:::::::: NP1312A ::::::::L::::::::::::AQ::::L:::::::N:::::::::::::::LG:L::::: rrnAC2476 ------------------------------------------------------------ Hmu3160 GV:::::S:::::::::E:::T:::::S:::::::N::::::T::::::::YG:L::::: Hut2308 L::::F:::::A:::::::::::::::S:::::::N::::::::::::::::::L::::: HQ3398A T::N::A::::::::::::::::::::ST::E:LT:AD:::::Q:::::::::::::::: HVO_0135 AF:::::::::::D::::::::K::D:::::M:L::AD:::::Q:::::::::::::::: Hbo1361 T::::::S:::T:::::::::K:::K:::::::L::AD:::::Q:::::::::::::::: consensus DGHIDAFGGPISTGKEANVYEALGGDDA-------------------------------- #oth 132231212121111112222124446532333222111111111111111111111122 VNG2233 ------M::::::::::::::::DAEGG:::::::::::::::::::::::::::::::: hla0633 ::YV::::::V::::::S:F:::::QAGERPEPGSA::::::::::::::::::::::AA NP1312A :SYV::::::::::::::I:T::AP:G-:::::::::::::::::::::::::::::::: rrnAC2476 ----------------------------:::::::::::::::::::::::::::::::: Hmu3160 ::::::::::::::::::::T::A::SEARSASGQS:::::::::::::::::::::::: Hut2308 ::Y:E:::A:::::::::::T::S:AQSRSAPDESSRPDRRSAESKAAEPRDYGDEPEPR HQ3398A :D::A:::::::::::::::::R:T:T::::::::::::::::::::::::::::::::: HVO_0135 :::::::::::::::::::F:::::::::::::::::::::::::::::::::::::::: Hbo1361 ::::::::::::::::::::::::PE:T:::::::::::::::::::::::::::::::: consensus -----------DVAVKVYRINASNFRQMRDYLEGDPRFEGIGSDKKKVVLAWTRKEFANL #oth 221231333332113121111212133..3..1.....11124..131.31.12..21.. VNG2233 ::::::::::::::L::::::::::Q:::A::::::::::LRG:::A:::S::::::S:: hla0633 GGGPEGVHPERE:::::::::S:::::::::::::::::::A::::A::::::::::::: NP1312A :::::::::::E:::::::::::D:K:::A:::::::::::::::::::V:::K::Y::: rrnAC2476 :::::::::::----------------::S::D::::::::::::::::T::V:::SS:: Hmu3160 ::GGDGEPRDEE:::::::::::D::D::G::D::::::::::::::::T::V::::::: Hut2308 DDGGRGTKGGHE:::::::::::D:KD::G::D::::::::::::::::T::V::::::: HQ3398A ::::::::::::::::I::::::::Q:::S::::::::D:L:Q:::AI:::::Q:::::: HVO_0135 ::::::::::::::::I::::::D::H::::::::::::N::H::GQ::R::V::::::: Hbo1361 ::::::::::::::T:I:::::::::H:::::::::::::::N:::R::::::Q:::::: consensus ERARRAGVRVPEPIAVERNVLVMELVGTE-EDRARRLSEVHIENPETAYEVVREYMRRLY #oth 3..33....1.3.1..1.......121531231121.21.31...1111..12..21..2 VNG2233 R::KA::::::A:L::Q::::::::I:R::G:A:PT::D:D::::QM::::::::V:::: hla0633 ::::K:::::::::::Q::::::::::HA:::::::::::DV:::::::::::::::::F NP1312A ::::K:::::::::::::::::::YL:DD:DR::K::N:::::::::T:::::::::::: rrnAC2476 K::::::::T::::::::::::::YL:::::G:SK:::::::::::::::::K::T:::: Hmu3160 Q::QK::::::N::::Q:::::::YIA:::DG::K::N::::::::::F::::::::::: Hut2308 K::QQ::::::N::::::::::::YIA:DA:G::K::N::::::::::F::L:::::::H HQ3398A R::M:::::::::::::::::::::::LV::E:::::A::D::::Q::::::Q:::Q::: HVO_0135 :::Q:::::::K::::Q::::::::::VV:D:::::::::RV:::Q:::::::::::::H Hbo1361 ::::Q::::::::::::::::::::::LV::::::::A::SV:::Q:::::::::::::: consensus DAGLVHGDLSEYNIVIHEGELVVIDLGQAVTVHHPNAEEFLRRDCRNVANFFARQGVDVD #oth 3...1......1.31212.1.221.2.....1.11.1431.2...3...3..31..3122 VNG2233 :::::::::::::V:VY::::::::V:::::I::::SAT::E::::::::::::::A:A: hla0633 R:::I::::::::MI:::::::I::M:::::::::::G:::D:::E:::T::T:::I::: NP1312A :::::::::::F:::V:::::CLL::::::::::::SR:::E:::E:::G:::::::::: rrnAC2476 :::::::::::::::F:::Q:YI::::::::I:::::DD::E::::::::::::::::AT Hmu3160 :::::::::::::::F:::Q::::::::::::::G::RDY:E:::E:::::::::::::T Hut2308 A::::::::::::V:F:::::::::::::::::S::::D::::::Q:::::::G:::E:T HQ3398A S:::I::::::::MI::N::::::::::::::::::::M::::::K:::T::S:::I:T: HVO_0135 R::::::::::::LI::D::::::::::::::::::::::::::::::::::R:::A:A: Hbo1361 S::::::::::::MI::D::::I::::::::::::::D:::::::::::K::S:::T:TS consensus ADDLLEYV---------------TDDDPDPSGDPA---D--------------------- #oth 233.233.21211122211111123325445.5537454454432221111111111111 VNG2233 P::::S::HEHATPRAEADTA::AG:RDGTE:SLDRGS:ADDA::::::::::::::::: hla0633 P:::Y:::::::::::::::::::EPE:::::E:ESGGESKSGGESKSGGESKSGGESDK NP1312A :::::AH:::::::::::::::::EPE:::::NAE:::-::::::::::::::::::::: rrnAC2476 PEE::A::REYATPKDKADTAPGS:::AV:Q:T::DRR:DE::::::::::::::::::: Hmu3160 :E:::AT:::::::::::::::::RA:EAAD:---:::-::::::::::::::::::::: Hut2308 ::A:YD::::::::::::::::::::EQQDY:SS:ASK:T:::::::::::::::::::: HQ3398A PAA:I:T:::::::::::::::::EP::::::TL:QSEHSVQSTDEES:::::::::::: HVO_0135 G:S:Y:F:::::::::::::::::G:E-GED::GDE::-::::::::::::::::::::: Hbo1361 :T::Y:F::::::::::::::::::V:A::T:::DVDERDAGTDE:::::::::::::::