[C] (CyoC) COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 8 genomes BUD0907 9 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG0662 rrnAC0882 rrnAC1399 HVO_1138 Hbo0419 Hmu1908 Hut0993 - NP2450A HQ2352A

Pairwise sequence scores
Consensus score	2174	rrnAC0882	NP2450A	HQ2352A	HVO_1138	Hbo0419	VNG0662	Hut0993	rrnAC1399	Hmu1908
1201	rrnAC0882	2020	1006	967	987	1001	1022	1082	1058	1018
1507	NP2450A	1006	2226	1252	1330	1279	1360	1317	1388	1422
1693	HQ2352A	967	1252	2179	1659	1806	1534	1371	1433	1405
1749	HVO_1138	987	1330	1659	2182	1836	1493	1470	1445	1445
1759	Hbo0419	1001	1279	1806	1836	2215	1536	1403	1507	1431
1692	VNG0662	1022	1360	1534	1493	1536	2181	1509	1517	1456
1672	Hut0993	1082	1317	1371	1470	1403	1509	2188	1492	1476
1724	rrnAC1399	1058	1388	1433	1445	1507	1517	1492	2193	1643
1674	Hmu1908	1018	1422	1405	1445	1431	1456	1476	1643	2212

297 symbols
consensus       -MSTEEDHDD--HG-HHLPAVEDWPRGFGEASWWPFITAIGAAGIYVGAALYVLGQGENA
#oth            1234413343412121111131.114.1111.1..121.2.1113.3211.432245443
rrnAC0882       MAGST:AGTE::--:---RVA::---:HEHR:R::LLA:V:::SL:LSIG:VFV:LDLVP
NP2450A         MSVETD:GHGHG:::::::::::::K:::::::::::A:L:GS:L:I::::F::::P:HG
HQ2352A         ::G:::S:::::::::::::::::::::::::::::V::V:::SV::A::::I:::SNSD
HVO_1138        ::::::A::::::::::::::Q::::::::::::::V::V:G::::A::G:::M::--DG
Hbo0419         ::G:::A:::::::::::::::::::::::::::::V::V::::::A::G::I::R::::
VNG0662         :::VAD:ST:D::::::::::::::K::::::::::::::::::F:I::::::::R::S:
Hut0993         :::IV::T:AG:D:::::::E::::Q::::::::::::::::::::L::::WL:AG:DDP
rrnAC1399       :::VSDE:A:DG::E:::::T::::H::::::::::V::::GS::::S:::L::SM::::
Hmu1908         ::TVA::TSEE:::D::::::::::::::::::::::::::::::::A:G:F::S:A::P

consensus       LVGPMVGPGAFVGSVGLFLAGLYGWLYHAFVSDFWSRGADGHSANKLRWGMLLFLGSEIA
#oth            3.2342222243322221.2.21..211..12311424416434652232.12..11121
rrnAC0882       S:V:I:LG::--:AI::-:T::A::ANE::IA:YL-:NRS:GDSDLYATT:I:::V:DV:
NP2450A         V:S:LA::LV::L:TAA:::::::::::::IV:::AGE::D:GFP-MKLT::::::T:V:
HQ2352A         ::::::::ATM:VA::I::::::::V::::::H::::ESS:Q::::::::::A:::::L:
HVO_1138        I::QTA::AV::::IF::::::::::::::::H::::D:SQK::S::::::IA:::::LG
Hbo0419         I::Q::::A::A:::AI::::::::V::::::H::::D:SEKG::::::::IA:::::LG
VNG0662         :::::::::V:IA:TFA::::::::V:::::AAY:--SN::GGSTA:::::IG:::::::
Hut0993         :::SS:::::IIV::F:::V:M:::::::::V:::H::::PSASSG::L:::::::::::
rrnAC1399       ::SQT::A::MA:::::::V:I:::::::::::::E::T:Y::DKT:KFA::::::::::
Hmu1908         V:SELIAA:TT:AT::I::::::::::::::AN::E::T:H::GGT::FA::::::::V:

consensus       TFGAGFVYYFFIRAG-AWPP--AALP---NLLGSLVIANTAILIASSVTLHYAHVALRNG
#oth            ..1.1.2..121.1236.5634652112252212..22..31.22..3.1.32.411253
rrnAC0882       ::S::::::A::::::S::::::H:::::P::::::VI:::L:L::::::::G:E::ED:
NP2450A         ::::::::::::::D:::ANLPPIVA:DG:V:NA::::::L::::::::M::::H::LKD
HQ2352A         ::::L:G:::Y:::::N:GSIFVGI::::T:T::::LI::TL::::::::::::::I::N
HVO_1138        ::::L:A:::::::::T:::::QE:::::H:T::::L:::::::V::L:::W::::I:EE
Hbo0419         ::::L:G:::Y:::::D:NEILVGV::::E:T::::LI:::L:V:::I:::W::::I::N
VNG0662         ::::::A::::::::TQ:STAAS:I:::DGF:::::VV:::::VV::F:::F::::::K:
Hut0993         ::::::::::::::::::::::DH:::::H::::::VV:::::::::::::V::L:::R:
rrnAC1399       ::::::::::IV:G:EV:TQ::::V::::EVF:::::V::LL::::::::::S:I:::S:
Hmu1908         :::::::::::V:GANV:SA::EL::HGG:VF:N::::::I::VI::L:::::::K:LD:

consensus       NRRRFLRLLGVTLLLGIVFIGGQVYEYYEFIVHEGFTITSGAFGSAFYGLTGLHGLHVTL
#oth            2153.262.34..2..21.11..2....1.13243.2134.312...11......2..21
rrnAC0882       ::D:::G::::::A::V::LA:::::::::VAV:::G:G:::::::::::::::::::A:
NP2450A         ::K::V::::A:::::LI:LA::T:::::::TVY::GL:D::Y:::::A:::::::::A:
HQ2352A         K:KK:IGG:LG::::::::::::::::::::I::S::L:::I:A:::F:::::::V::S:
HVO_1138        :H:N:ILG:A::::::VI:::::::::::::::SN:S::D:I::::::::::::::::S:
Hbo0419         D:GK::SG:A:::::::I:::::::::::::::SD::::::L:::::F::::::::::S:
VNG0662         ::S:::A::VS::V::V::::::::::::::A:::::LSG:L:E:::F:::::::::::M
Hut0993         ::::::QW:::::A:::::::::A::::Q:::VD::SLST:T:::::::::::::A::::
rrnAC1399       ::S:::K:::A::::::::::::::::::::::K::S:GG:IY::::::::::::::::M
Hmu1908         D:QS:V:W::L:::::VI:::::A::::::::G:::::AE::YA:::::::::::::::M

consensus       GAVLLGIVFIRALRGQYSAERHTSVSTASMYWHFVDVVWIFLVVVLYVGAEL-----
#oth            .11.121324.133.1.132111111.2.1......3..1...1...3.14233111
rrnAC0882       :VL::A:A:G:::::H:AP::D:AIR:T:L::::::L::V::::::::::A::::::
NP2450A         :::::T:L::::IY:H::P:K:V::::V::::::::I::V::::::::::IV:::::
HQ2352A         ::::I:V:TL:G:L:::::D::V::::::::::::::::::::::::L:::VGA:::
HVO_1138        :::::::::V::::::::T:::V::::::::::::::::::::::::::::VGA:::
Hbo0419         :::::::::::::A::::::::V:::::::::::::::::::::::::::::GTGAF
VNG0662         ::::I::IMV:G:::::::D:::::::V::::::::I::::::::::A:SVA:::::
Hut0993         ::::I::::A:GMA::::EH:::::::V::::::::A::V:::A::::::AA:::::
rrnAC1399       :::::::::::GYY::::::::::::::::::::::I::::::::::M::N:V::::
Hmu1908         :::::::::V::IY:::::::::::::V::::::::::::::::::::::::SI:::