|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1956 | hla2292 | HQ1165A | HVO_0781 | NP0906A | Hut0553 | VNG0300 | Hmu0662 | Hbo0127 | rrnAC1911 |
1241 | hla2292 | 2128 | 1016 | 1092 | 1115 | 1060 | 971 | 1094 | 1030 | 1071 |
1276 | HQ1165A | 1016 | 2020 | 1163 | 1038 | 1123 | 925 | 1068 | 1048 | 1207 |
1312 | HVO_0781 | 1092 | 1163 | 2003 | 1115 | 1170 | 1070 | 1126 | 1150 | 1136 |
1373 | NP0906A | 1115 | 1038 | 1115 | 1986 | 1106 | 1046 | 1097 | 1158 | 1211 |
1470 | Hut0553 | 1060 | 1123 | 1170 | 1106 | 1972 | 1112 | 1271 | 1219 | 1301 |
1370 | VNG0300 | 971 | 925 | 1070 | 1046 | 1112 | 1820 | 1224 | 1108 | 1191 |
1487 | Hmu0662 | 1094 | 1068 | 1126 | 1097 | 1271 | 1224 | 1927 | 1214 | 1289 |
1431 | Hbo0127 | 1030 | 1048 | 1150 | 1158 | 1219 | 1108 | 1214 | 1961 | 1278 |
1541 | rrnAC1911 | 1071 | 1207 | 1136 | 1211 | 1301 | 1191 | 1289 | 1278 | 1982 |
297 symbols consensus ----------MITLSSDFGSPYPAAMKGVILQRTDARLVDVAHDFPRQDVRAAAFWLREV #oth 1111111111111121111321111....23362.1112.12.11..1.1121...1121 hla2292 ::::::::::::::A:::::::::::::::RRH:::E:I:::::L::G:P::::::::F: HQ1165A ::::::::::::::::::::::::::::::::T:::::I::T:EL:::::::::::C::T HVO_0781 ::::::::::::::A::::LA::::::::V:S:::G::::::::L::::::::::::::T NP0906A :::::::::::::::::::T:::::::::::KQC:::::::::::::::::ST::::TQT Hut0553 :::::::::::::::::::T:::::::::LASG:::::I::S:E:::::::::::::::: VNG0300 ::::::::::---------------::::V::T:::::::I:::L::::::::::::::: Hmu0662 :::::::::::::::::::::::::::::::RDS:::I:::S:E::::::PG:::::::: Hbo0127 MARGGRETDT:::::::::T:::::::::L:S::::::::::::::::::::T::::::: rrnAC1911 ::::::::::::::::::::::::::::::C:A::::IE:I::::::::::::::::TQT consensus LPYFPPAVHLVVVDPGVGTDRDAIVVRAGDHALVGPDNGVLLPAARALAGDADD------ #oth 2.2..2.1.22.1......1.3.22211.2.2211....124.21.42146643441111 hla2292 ::E::::::CA:I::::::::::L:::::S:V::A::::LAM:P:::::REKEQD::::: HQ1165A I::::S:::VI:::::::::::::MI:V:::::I:::::::R:V::Q:SEQLQ:ETMGLK HVO_0781 :::::::::::::::::::::R:V:L:V:::VF::::::::R:P::RV:AEL::D::::: NP0906A ::E:::::::I::::::::G:::L:::::::V:::::::::F:P::::::GD::YS:::: Hut0553 ::H::::::::::::::::::A:LAI:::E:V::::::::::::::K::DA::SEA:::: VNG0300 V:::::::::A::::::::::S:V:::::S::I:A:::::AV::::RI::::--:::::: Hmu0662 :::::::::C:::::::::::A:::::V::::I:A:::::A::::::I:D:G--:::::: Hbo0127 :::::A:T:::::::::::::A::::E::E:TF:A:::::V:::V:EI::----:::::: rrnAC1911 :::::::::C:::::::::::::::::::::::::::::::::V::E::ETEN:AP:::: consensus DDIEVFEIDYDDPASATFHGRDVFAPAAAAIH------------EAGVDTLEALDRLE-- #oth 35213154234214.5..........3..4211111111111112425443655444522 hla2292 EN::A:VV:VGE:::E::::::::::T::R:RTALDDNPAKATP::VSE::A:M:D:S:: HQ1165A NN::Y:RYE:TE:Q::::::::::::::::::::::::::::::DC:IASV:T::AVTSV HVO_0781 APV:AY:::VPN:E:T:::::::::::::DA:::::::::::::V::ASA:GSV::F:PI NP0906A A::DAYQL:MG::R:S::::::::::G:::V::::::::::::::T:I:R:PE::C:S:: Hut0553 :A::G::YA::::E:V:::::::::::::T:::::::::::::::::RSQF::G::FG:: VNG0300 A::D:::::VE::::::::::::::::::D:::::::::::::::R::::FDQYPEY::: Hmu0662 :V::::::ET:E::::::::::::::M:::V::::::::::::::I:::S:HEVAD:V:: Hbo0127 ::FD:YDVA:::VP:N:::::::::::::NV:::::::::::::D:S--AVTDIE:IT:: rrnAC1911 :TF:::TWA::::::T::::::::::::::V:::::::::::::DT::::I:T:SEID:: consensus PAEDYVDLTFPAPTVD----DDG--ATGEVLVVDDFGNAITNVPGEVLADRFGEQVRVNG #oth 12545342511314251111424331312.111.2...31..2..442524312615121 hla2292 ::T:P:::VL:D:S:ERDDAG:PVAVD::::AI:R:::VV::::::LIRG:--DW::I:: HQ1165A ::TAT:QCK::SA:I:::::A:DTS:::::::I:::::I:::I::SF::::A::MAT:GT HVO_0781 :VGSLSECRLSEA::S:::::::RE:::::::::::::C::::::AFVR:AA::T:W::: NP0906A ::SSV::::L:S:EF:::::G:A::V:AA::A::::::V::::::T::G:S--DR:V:D: Hut0553 :V:A:EG::::D::IR::::E:::::D:::::::::::::::::::I:TE::::A:T::: VNG0300 :TA::ERVS::::A:T:::::G::::A:T:IA::G:::::::L:::IV:::V:DT:E:D: Hmu0662 R:DG:EE:A::E:::S::::QT::::S:A:::::G:::::::::::AIE::::Q:::I:: Hbo0127 :V:EF::::::::V:G:::::GQ:::::::::::::::VV:::::R::DGL--:::S::: rrnAC1911 :T:::A::R:::AA::::::G::::::::::::::::::V::I::::::GQ:::V:S:D: consensus EEAPVRRTYAAVDPGDRLVTVGSHGNVELAVNRGRGDEAFGVSAGDTVRLRW----- #oth 2631163213422524311......2..21..3.1.122.41431231324642221 hla2292 :LT::AE:FG:::S:::::::::::Y::CD::D::::G::DLRP:ES:::VADNVSL HQ1165A TT:E:TS:F:D::T::P:L::::::F::CD::H:Q:T:I:ELEVK:::QI:F::::: HVO_0781 :SV::G::FE::AR:EK:::::::::::CD::H::::::::LAP::R:E::VD:::: NP0906A ::R::VDS:DHAAT:TAV:::::::::::::::::::D:::::::E::::DGIDAA: Hut0553 VW::AK::::M:EADN::::::::::::::::Q:::::R:S::T:SRI::::T:::: VNG0300 VAT::::S::HT:::Q::L::::::::::::::::::D::::::::E:TVV:::::: Hmu0662 :P::::::::T::::Q::::::::::::::::::::::::R:G:::R:E:SY::::: Hbo0127 :P:::GDS::::E:::::::::::::::F::::::::D:::LAV::::T:EY::::: rrnAC1911 V::::H:A:::::KSQ:::::::::::::::::::::::::::T::::TISLC::::