| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 5070 | VNG0822 | hla2296 | Hbo0527 | HVO_1033 | NP3108A | Hut0471 | rrnAC0464 | Hmu1137 |
| 2231 | VNG0822 | 3924 | 1719 | 1769 | 1735 | 1680 | 1599 | 1608 | 1644 |
| 3271 | hla2296 | 1719 | 5213 | 2662 | 2852 | 2026 | 2052 | 1942 | 1949 |
| 3020 | Hbo0527 | 1769 | 2662 | 5233 | 3010 | 1934 | 1968 | 1827 | 1843 |
| 3125 | HVO_1033 | 1735 | 2852 | 3010 | 5119 | 1953 | 1881 | 1828 | 1923 |
| 2879 | NP3108A | 1680 | 2026 | 1934 | 1953 | 4889 | 2276 | 2294 | 2300 |
| 3145 | Hut0471 | 1599 | 2052 | 1968 | 1881 | 2276 | 5861 | 3063 | 3210 |
| 3126 | rrnAC0464 | 1608 | 1942 | 1827 | 1828 | 2294 | 3063 | 5988 | 3703 |
| 3142 | Hmu1137 | 1644 | 1949 | 1843 | 1923 | 2300 | 3210 | 3703 | 5888 |
857 symbols consensus ----MLGYLPLVAAVGICLPLVLSPVSERADLVVTRVARRLF-GRYVGESPPRRR----L #oth 133455442125424455453434534653236421433431125326445514331233 VNG0822 ::::--------------------------------------:------------::::- hla2296 :::::IA::::L::F:C::A:L:PA:DDG:::::::::LS::::D::::DG:::QRQRD: Hbo0527 :::MVV::::::L::IF:::V::::::S::N:FI::ISLP::::WH:MNES::::QQESS HVO_1033 MVAQY:YL::::L::LLV::V::::::RA:::L:S:::LSV:::F::ANEN::::EQRTQ NP3108A :::::FRF::::::::VTAV::AA:FIG:I:TM:S:L:F:::D::SISAP:Q:TK::::: Hut0471 ::MSLT:::::IG:LALAGM:G:TR::PH::R:F:::::QY::SQHIE:::V:K:::::: rrnAC0464 MALNP::LA::AVV:::LGLIGY:T:N::F:RN:::LS::::::::::Q::K:E:::::Q Hmu1137 MQLNP::T::VF:VIA:LCVVA:AMLD:TF:TSL::FG::::::::IP::EE:E:::::: consensus LRAAHVGETYRVYAAKTLLYAAVAAVAGAVFGVYAAAGLLLVLPVIAAALRG-LPSALGF #oth 243142653214123212324534244132412145236364444656444332164234 VNG0822 ----------------------------------------------------:------- hla2296 M:::::AG:H:T:::::::::G:LG:::S:I:::::::::S::D:SE:::::T::AS::: Hbo0527 ::::F:::SH:::SS::::MS::FGI::S:::::F::LIVQTFA:P:S:::EA::P:::: HVO_1033 ::::::SV:H::::SR:::M:T:FG:::S:::::L::VT:DT:A:QSETI:EV::G:::: NP3108A ::G:AI:TP::E::T::YF:IVF::AV::::::::G::VFALVETYGP---::V:TV:PT Hut0471 :AS:Y:ET:::::::::Y::T:L::LI:G:V:::VVG:A:V:I:T:::V:AD::::VM:D rrnAC0464 :E::YID::::G:::R::V::C:G:::::IT:A::IG:F:::::ALVNLAQ:::::TMVT Hmu1137 :KS:F:VY:::T:::R::::T:L::LG::IT:::LFG::::AI:G:VDLMM::::RTMVN consensus AAGLRGLE-VLPLRQLFLLLTGGGATLGALLAGGTYWARWELLDQRARARRRQIDAALPR #oth 342445552414454425423532244143414341551145266315314451324231 VNG0822 --------:------------------------------------------------ME: hla2296 V::VTR:T:E:G:PK::::::LAS:::::A::V:M:YG:::::::::H::GAE:::T::: Hbo0527 L:AVASMP:N:SVYE::G:VLVSS::V::T::A:::VV:::Y:::::::::V:::::::Q HVO_1033 LG::TSIQ:A::::D:::A:LLSS::::T:::L:V::G::YV:TE:::T:SSE:E:T::: NP3108A VF::D:TRLA:------::::S:--LV:S:A:::A:A:::R:PSI::D::Q:::::S::: Hut0471 :L:N:N::I:::AD:V:IV::A::VV::::S:VV::V:::Q:PAGT:EV:::G:NE:::: rrnAC0464 :F:::TF:L::TPT:TLYI:I:::VLS::AT::L::LY:::R:KNQ:DV:S:N::EGMA: Hmu1137 :L:I::F:L::TP:EILWI:I:::VIT:VTA::L:::L:::MPRS::AV:Q:A::EGQG: consensus TVAFMYALSRGGMPFPDVLRTLARNQEIYGEAAREVSVAVRDMDLFGTDMITALRRMARR #oth 12..41..1.1.221351132.33.2411.23.4.4211.23224114.43112243261 VNG0822 ::::::::::S:::LAE:::I:::::PV::A::E:MA:::T:I:NY:A:I::::E:VGS: hla2296 ::::::::::S:::::R:MD:::E:EAV:::::T:L:::::::NA::::AL:::Q:TS:: Hbo0527 :I::I:::::S::::QK::A::TE::HV:::::::FG:::N:VQT::::LP:::::::E: HVO_1033 ::::VF::::S:::::Q::E:::::EA::::::::::IV:::::A::::VLSS:QT::T: NP3108A M:::T:::T::::S::::::::SQ:EDVF::G:A:IG:V::R::::NV:LV::VQDISQQ Hut0471 ::::T:::::::LA::::M:::G::R::::D::D:::::::E::V::::::S:I::T:H: rrnAC0464 :I:::::::::::S:S::M:V:::::::::DT::::G::::E:::::R::::::EHVS:: Hmu1137 :L::L:::::::VS::AA::::SD:R::::AS:E:::::::Q:::::Q:::::V:G::G: consensus TPSDDLATFAENLASVLQSGQSLSAFLREQYERYQEEAEARQQQYLELLATFAEAYVTVL #oth 1..34153.4...4.1.31.24223..521.12432.1143.324.12.1.4..1...22 VNG0822 :::::::E:T:::G:I::::SD:P:::KQE::Y:A:::::T:S:F::::::L:::::::: hla2296 :::::::D:::::::::GT::PI:T::SD:::L::::::SK::::::::S::::::::A: Hbo0527 :::QR:DD:T:::T:::T:::::::::H:::D:F:A:S::Q:::::::::::::V::::: HVO_1033 :::PS:EE:::::::::G::RN::S::Q:::::F::::::Q:::::D::S::::V::::: NP3108A :::EQF:Q:S:::V:::::::NV:T:::::::::RD:::EQ:KEI::::::A::V::::I Hut0471 S:::TFR::G:::::::A:::HIP:::ED::D:L:::::Q::EEV::::::I::::::T: rrnAC0464 :::EQFK::I:::S:::::::::AP::::::::H::::AE::EDL::R:::V:::::::F Hmu1137 :::E:FQ:::::::::::::R:::T::::::::TKD:S:R::EEI::H:::V:::::::: consensus VAGPLFLITILLVIGLTLADTLPLLRLVAYLGIPLANFGFVVYLDSITQ-SLGGGGEADT #oth ..12..13.1.112..1342..52214441142.21232132123231315214346646 VNG0822 :::::::::::V::::::GG::GF:::T:FVLV:G:T:::A:::::::DATV::P:D--- hla2296 ::::::F::::V::::V:E:::::::V:V:::V:::T::::::V::V:::GI::TETV:L Hbo0527 :::::::::::V:V::VMQ:::::::VII:::L:::SVA::::V::V:E:::RAP:RTGS HVO_1033 ::::::F::V:V::::V:::::T:I:I:G:V:::::S::::::I::::E:::R:AAV::D NP3108A :::M:::V::::I::::VGE::FIMQAI::VI::A::LLILS::LE::::P:RT::::RQ Hut0471 :::V:::L:::::F:::VTE:::F:Q:LT::I:::S:AL:::F:VQKLE:E::VAR:SGV rrnAC0464 ::AV:::M:::::F:::TT:::W::QMM:::V:::::V::M:::::KL:::::I:NGGT: Hmu1137 ::AV::F::::::F::::::::VFIQM:G::M:::::A:::L::GQRLA:I::I:NNKT: consensus ----ALDRGESATRAAQTDGSGE-PAPDGGVA------DRWRANRERLAAYDRIRSLRRL #oth 6222425434444565443363446521114543332244453324112422.2454435 VNG0822 ::::EQSV:GEQS:FQSIPSPSAALC::::ADAAVAPLGSSPE::A:F:ISE:L:PVLYR hla2296 SEAIEDES:M:D:AS::A::N--::Q::::::GGSPSA:::A:S::::R::::::T:::W Hbo0527 VADADDAS:::NAPV:V::AEA:IVTA::::LEN:::::::::::::::V:::LSVAT:A HVO_1033 G::::DTAA:::R:IDA:G:V:SA::T:::ETDARG:::P:::::::::::::L:A::NW NP3108A ::::L:GV:GA::PQEVV:T:S:YHH:QSAE-::::::-----:H:::D::R::Q:IQET Hut0471 A:::::EG:SPDQN:P::PT---:ATA:::HL::::::R:LS:G:SQ::L::::SRFK:V rrnAC0464 D:::I:::Y:T::LGKPSL:::PLGL:::::V::::::PADE::WD::RFH::VK:::E: Hmu1137 T:::L:::RATT:F:KP::SG:S:T:T:::Y:::::::--DSIE:RQ::V::::ATVK:: consensus LASPVQSLLWNPTRVLYLTVPIALVWLALRA--------------PGALGGGTFNAAVLD #oth 343.4324344.44413112.212243232222111111111223144365545543331 VNG0822 :RN:LTVV:ET::LLFWVSC:::A:Y:GSQW::::::::::::::WAP:ST:V:AP:AY: hla2296 A::::E:V:GA:RT:FL:S::L:V:V:LVT::::::::::::::F:IT::PP:EMV:QVE Hbo0527 :SQ:G::M:E::LYT:AV:L:LG:I:I::TLDVRSAVQTLRAAVL::LE:EW:AF:::V: HVO_1033 FER:LDT:GRK:LVA:A::::LG:::V::::TI:::::::::PAD:TI:----GV:DAV: NP3108A ::::::::VTR::LL::V:::::::VT:Y:L:::::::::::::::::IA::SIDIE::: Hut0471 :RR:A:TII:::::IF::::::::::V::::::::::::::::::::TIT:YG::LRLA: rrnAC0464 :S::I:::V:::VY:::::::V:V:L:LV:::::::::::::::::P:FQAS:V:IRL:: Hmu1137 VT::::TF::::S::::V:::::VLAV:::::::::::::::::::A:FET::V:LR::: consensus DLLVQATLFVLGTFAVVYELYKRRIRRIEAATPDFLDRLASLNEAGMTVVESLRRVRDSD #oth 35213332333243232214432.3311.422.11.1.2..2....422.4.24.23321 VNG0822 :A::H::V::V:::::A::TAR::RKA:::EV::::::F::T:::::AA:::FG:TV:G: hla2296 TPI:A::VV::ASY:::::AH:::V::::S:V:::::::::V::::TS::G:V:::A::N Hbo0527 GP::EL::LSM:GITLA:::R:::LKA::REM::::::M::V::::V:::K::H:LAQ:: HVO_1033 EHV:E:AIGS:VVVSAFH::R:::::A::RSM:::::::::V::::L:::Q:::::SA:: NP3108A :I:I::AI:LM::::::::VS:Y:L::L:Q:V::::::::::::::IS::S::D:::::: Hut0471 :::::T:::LI::::::R:I:S:::D:::::::EL:E::::::::::SF::::D:::::: rrnAC0464 ::VI:SV:LI::P::L:RFI:TQ:LS:::D::::L:E::::::::::::::::::::G:: Hmu1137 :V:I:SL::::A:::IAR:::T::::::::S::EL:E::::::::::::::::E:::GT: consensus LGALTDEVDRIWRDIDWGANVEDALRRFGRRVRTPMVSRVVTLITNAMRASGDLGPVLRI #oth 212132125.222.151..44541.31233.3422232.3.1.2211131.1531.11.. VNG0822 :::::Q:LE:T:A::Q:::RI:H::T::RD::N::A:::::A:T::::A:::N::::::: hla2296 :E::::DLQ:TR:::::::D:GT::::LE::::S::T::A:A:::::::::::V:::::: Hbo0527 ::PISE:LR:T::::Q:::SLRN:::G:D::AQV:::::A::::M::VA:::EVA::::: HVO_1033 ::P:G:::E:AV:::::::DAQT::::MD::TAS:::::S::::::::S:::::A::::: NP3108A V:::D:::N::::::E:::T::QS:N::ES::K::S:T::::::::S::::NEI:::::: Hut0471 ::V:::::::::T::SM:::SP:::::::Q::::ASIA:::::LMH::::::R::::::: rrnAC0464 I:V::E:MH:::A::RM::::D:::V::::::Q:TA:T:I:::L:H::H:::Q::::F:: Hmu1137 V:::SE::::::A:VTM::::::::T:::::I::TSM::::::LI::::S::KM::I::: consensus AANQARADRRLRRERRQEMLTYLVVIYISFLVFLGIIAALDEVLIPSLPDA--VPG---P #oth .141122232.4.3.11212..12...11.1..131131144311.22153125231113 VNG0822 :::E:T:S:::E:D::N:L:::V::::V::F::IA::V:::TIF::NI:TG::AAT:::Q hla2296 ::DES::TWS:::::::V:::::I::::::::::::::S:SVSF::AIEE::AI::AGAG Hbo0527 :::E:QDS:::L:::::::M::::::::::F:::::VV::TLAF:::VEA::SQSS:::A HVO_1033 :::E:QDS:::A:::N:::::::L::::::::::::::::TVSF::AVEQ:::SA::::G NP3108A ::E:::S:L::::Q:::::::::::::V::::::IV:L:::Y:::::::::EALA::::: Hut0471 :SS:::S:LE:::::::Q:F:::::::V::F:::V::F:VE:::V:::::N::::V:::: rrnAC0464 ::T:S:::L::K:R:::Q:::::::::VA:::::V::V:VQ:::V::::SS::::T:::: Hmu1137 ::D:::S:Y::::Q::::::::::::::::::::V:::SVQ:::V:A::SS::::T:::: consensus AGSGARLGVDSGAFA---G-LGDVDKAAYTLLFFHTALIQAVCSGLVAGQLGEGSIKDGA #oth 5332444125334232221114432231.422.1.2231.2311.211.21.2.3231.3 VNG0822 :::::SSA::::::SQSA:Q:TAAK::::STV::::S:V:::::::::::M:A::V:A:: hla2296 TSASDLP:AP::PGGITD:::::INTT::EQ::::A:A:::::::::::::::::VR::V Hbo0527 IS::EVQ::ST:V:S::::::S:::TT::E:::::A:T:::I::::I:::::::RVF::L HVO_1033 V:::EVA::S::::S::::::R:::TES:M:::::VTA::GL:::VI:::::::Q:A::V NP3108A E:AP:M::-------:::::FEGG:EE::Q:I:::::V::STL::V:G:VM:G::::::M Hut0471 --ESN:::::VS::::::R:::Q:N:P::::I:L:A::::::L::::::L::::T::::: rrnAC0464 ::ESN::::GVDQ:::::R:F:R::::::::V::::::::::LT:FIG::::::TL:::: Hmu1137 ENT:-::::NVDQ:::::R:::Q::::::::V:::::::::L:T:F:G:::::::LR::: consensus KHAAILLGVAYVTFLLL------------------------------------------- #oth ..2221.32212323224221112123122332232123121212112212313222132 VNG0822 :::TVM:V:::T:::::G:::::::::::::::::::::::::::::::::::::::::: hla2296 ::VVA::LLTLA:::VIDLV:::::::::::::::::::::::::::::::::::::::: Hbo0527 :::VV::T:S:AL:VF:::::::::::::::::::::::::::::::::::::::::::: HVO_1033 :::::::VIT:::::FI::::::::::::::::::::::::::::::::::::::::::: NP3108A ::STAM:TIT::LLT::::::::::::::::::::::::::::::::::::::::::::: Hut0471 ::::::::I:::AI:VATSPVASLTMQSQETLGDGVTIGSVSTSEGGFVVIHERTADGDI rrnAC0464 ::::::::::::A:I::SSPVASMTVTSPAVSGDQITVESASLSEGGFIVVREFEEDGRV Hmu1137 :::::M::::::V::::SSPVASLTVDSPAAGQERITVDSASLSGGGYVVVYEGEAGGEV consensus ------------------------------------------------------------ #oth 213231132131321323113233233211312221222233232211221111212113 VNG0822 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2296 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0527 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1033 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP3108A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0471 VGHTGYLPSGEHTNVRVQLDETLQRQTTLVAVPYLDSDGDGRFTVG::::::::TDQPYA rrnAC0464 LGTSEYLSSGSHGDVQITLDRPPSTGQSLVLVAHQDTNGNQQLDYP:FDSNSGTPDQPYS Hmu1137 VGQSAYLVAGTHEDVTIELDSPVERRDSLVVVAHLDTDDDRVLNYGGFER:::::DRPYP consensus ----------------- #oth 33232231323311111 VNG0822 ::::::::::::::::: hla2296 ::::::::::::::::: Hbo0527 ::::::::::::::::: HVO_1033 ::::::::::::::::: NP3108A ::::::::::::::::: Hut0471 TGGDPVAVDADITPVET rrnAC0464 SSTAGENVTVEYT:VE: Hmu1137 APGQGEFVAVSVT:VE: